Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00184 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99984 * 3 2 1 5 5 H 1.48501 * 109.46865 * 29.99517 * 3 2 1 6 6 H 1.48494 * 109.47216 * 149.99822 * 3 2 1 7 7 C 1.37881 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99928 * 185.94537 * 7 2 1 9 9 C 1.50694 * 120.00012 * 5.94039 * 7 2 1 10 10 H 1.08997 * 109.47765 * 335.51041 * 9 7 2 11 11 C 1.50701 * 109.46858 * 95.50942 * 9 7 2 12 12 C 1.38974 * 119.92763 * 60.02263 * 11 9 7 13 13 C 1.36033 * 121.16359 * 179.97438 * 12 11 9 14 14 C 1.41195 * 120.21221 * 359.97438 * 13 12 11 15 15 C 1.44959 * 130.66692 * 179.97438 * 14 13 12 16 16 N 1.28728 * 117.83975 * 180.02562 * 15 14 13 17 17 S 1.69392 * 108.97993 * 0.02562 * 16 15 14 18 18 C 1.40812 * 117.79444 * 359.73256 * 14 13 12 19 19 C 1.36718 * 119.92296 * 239.99750 * 11 9 7 20 20 C 1.53000 * 109.47405 * 215.50509 * 9 7 2 21 21 C 1.53001 * 117.50143 * 134.11378 * 20 9 7 22 22 C 1.52997 * 59.99961 * 252.51616 * 21 20 9 23 23 H 0.96995 * 120.00047 * 359.97438 * 1 2 3 24 24 H 1.08002 * 119.41522 * 0.02562 * 12 11 9 25 25 H 1.08008 * 119.89603 * 179.97438 * 13 12 11 26 26 H 1.08003 * 121.07851 * 0.05146 * 15 14 13 27 27 H 1.08001 * 120.12274 * 359.97438 * 19 11 9 28 28 H 1.08999 * 115.55141 * 279.82732 * 20 9 7 29 29 H 1.09004 * 117.49556 * 0.02562 * 21 20 9 30 30 H 1.09001 * 117.50114 * 145.01873 * 21 20 9 31 31 H 1.09005 * 117.49253 * 252.50792 * 22 21 20 32 32 H 1.09000 * 117.52261 * 107.48666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0802 -1.1966 0.0974 9 6 1.2571 -2.4957 -0.1339 10 1 0.2310 -2.3626 0.2087 11 6 1.2526 -2.9254 -1.5784 12 6 2.4544 -3.1581 -2.2363 13 6 2.4796 -3.5472 -3.5396 14 6 1.2733 -3.7232 -4.2520 15 6 1.0369 -4.1246 -5.6247 16 7 -0.1838 -4.2068 -6.0252 17 16 -1.2128 -3.7937 -4.7447 18 6 0.0658 -3.4887 -3.5666 19 6 0.0661 -3.0858 -2.2385 20 6 1.9432 -3.5679 0.7148 21 6 1.0534 -4.4514 1.5916 22 6 1.9359 -3.3787 2.2331 23 1 -0.4850 0.8400 0.0004 24 1 3.3847 -3.0286 -1.7032 25 1 3.4254 -3.7222 -4.0310 26 1 1.8581 -4.3479 -6.2896 27 1 -0.8677 -2.9055 -1.7266 28 1 2.8257 -4.0269 0.2691 29 1 -0.0209 -4.2690 1.5633 30 1 1.3503 -5.4920 1.7226 31 1 2.8134 -3.7137 2.7862 32 1 1.4426 -2.4902 2.6272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = 49.935873 kcal Electronic energy + Delta-G solvation = -16453.930096 eV Core-core repulsion = 13891.390584 eV Total energy + Delta-G solvation = -2562.539513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.79493 -38.68684 -37.04025 -34.79134 -32.37456 -31.87584 -29.00630 -25.94254 -24.63352 -23.39623 -22.99475 -22.15633 -20.78489 -19.06065 -18.33122 -16.93020 -16.64088 -16.58296 -16.28652 -15.32970 -15.22866 -14.77556 -14.65780 -14.55648 -13.84562 -13.32765 -13.02412 -12.92008 -12.82082 -12.40381 -12.32488 -12.21208 -11.76883 -11.68342 -11.45515 -11.12770 -10.96801 -10.74289 -10.55863 -10.40372 -9.45789 -8.82472 -8.13141 -6.20450 -0.31066 0.40840 0.48000 0.92939 1.32883 1.42209 1.44227 1.51975 2.41813 2.85998 3.16763 3.29898 3.53582 3.75798 4.06102 4.27778 4.37023 4.40080 4.53365 4.58403 4.71004 4.81039 4.88399 4.94688 5.12831 5.15343 5.24925 5.32122 5.48679 5.53600 5.64191 5.72869 5.77749 5.99899 6.08738 6.33060 6.93392 7.44932 8.93959 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.007103 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.301686 B = 3940.903125 C = 4581.815520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.945 3.055 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.089 3.911 10 H 0.033 0.967 11 C 0.009 3.991 12 C -0.122 4.122 13 C -0.040 4.040 14 C -0.178 4.178 15 C 0.154 3.846 16 N -0.471 5.471 17 S 0.125 5.875 18 C -0.133 4.133 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.186 4.186 22 C -0.168 4.168 23 H 0.259 0.741 24 H 0.141 0.859 25 H 0.173 0.827 26 H 0.233 0.767 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 -8.321 -5.057 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.207 1.207 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.537 4.537 8 H 0.082 0.918 9 C 0.070 3.930 10 H 0.051 0.949 11 C 0.004 3.996 12 C -0.142 4.142 13 C -0.062 4.062 14 C -0.190 4.190 15 C -0.056 4.056 16 N -0.281 5.281 17 S 0.276 5.724 18 C -0.253 4.253 19 C -0.140 4.140 20 C -0.152 4.152 21 C -0.223 4.223 22 C -0.205 4.205 23 H 0.068 0.932 24 H 0.159 0.841 25 H 0.190 0.810 26 H 0.249 0.751 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.762 -8.472 -6.193 11.149 hybrid contribution 1.213 1.542 0.970 2.189 sum 4.975 -6.931 -5.223 10.003 Atomic orbital electron populations 1.70035 1.07357 1.27228 1.51345 1.25695 0.95438 1.02365 0.94782 0.85746 0.79228 0.79934 0.77981 1.20709 1.21705 1.18386 1.21190 0.93651 0.90212 1.48607 0.91801 1.17615 0.96991 0.91839 0.86575 0.94903 1.20615 0.92134 0.88204 0.98688 1.20845 0.98339 0.99986 0.95022 1.20972 0.96649 0.95523 0.93060 1.20656 0.94345 1.09669 0.94305 1.24437 0.95242 0.92752 0.93127 1.75916 1.06393 1.23386 1.22418 1.84696 1.15205 1.72697 0.99846 1.23515 0.97972 1.04860 0.98921 1.19799 0.98886 1.03651 0.91693 1.22374 1.00724 0.99497 0.92594 1.23018 0.96917 0.96468 1.05925 1.22712 1.02078 0.99657 0.96043 0.93167 0.84104 0.80982 0.75113 0.87890 0.87718 0.90911 0.87390 0.87652 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.98 12.76 21.45 0.27 -51.71 16 2 C 0.02 0.86 5.45 84.66 0.46 1.32 16 3 Si 0.94 41.93 29.54 68.60 2.03 43.96 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.50 -24.73 7.71 25.60 0.20 -24.53 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 9 C 0.09 4.02 2.22 -12.29 -0.03 4.00 16 10 H 0.03 1.74 6.74 -2.39 -0.02 1.72 16 11 C 0.01 0.36 4.74 -20.04 -0.10 0.26 16 12 C -0.12 -4.17 8.55 21.93 0.19 -3.98 16 13 C -0.04 -1.12 10.06 22.48 0.23 -0.90 16 14 C -0.18 -5.59 6.12 -20.20 -0.12 -5.72 16 15 C 0.15 4.02 11.46 86.87 1.00 5.02 16 16 N -0.47 -14.83 11.90 -55.96 -0.67 -15.50 16 17 S 0.12 4.36 23.86 -56.49 -1.35 3.01 16 18 C -0.13 -5.04 6.71 23.03 0.15 -4.89 16 19 C -0.12 -4.98 9.64 22.05 0.21 -4.76 16 20 C -0.13 -5.00 4.93 -10.79 -0.05 -5.05 16 21 C -0.19 -6.22 10.18 30.59 0.31 -5.91 16 22 C -0.17 -5.91 10.01 30.59 0.31 -5.61 16 23 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 24 H 0.14 4.35 7.77 -2.91 -0.02 4.33 16 25 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.23 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.10 4.71 7.92 -2.91 -0.02 4.68 16 28 H 0.10 3.49 7.41 -2.39 -0.02 3.47 16 29 H 0.07 2.62 8.08 -2.38 -0.02 2.60 16 30 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -60.84 291.77 4.16 -56.68 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.12 Total: 14.29 kcal Atomic # 6 Polarization: -53.49 SS G_CDS: 2.75 Total: -50.73 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.39 Total: -67.21 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.35 Total: 3.01 kcal Total: -60.84 4.16 -56.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.614 kcal (2) G-P(sol) polarization free energy of solvation -60.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds