Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38329 * 119.95740 * 279.71996 * 12 9 7 14 14 C 1.38273 * 120.15773 * 179.77014 * 13 12 9 15 15 C 1.38104 * 120.08296 * 0.51154 * 14 13 12 16 16 C 1.38958 * 119.91687 * 359.74247 * 15 14 13 17 17 S 1.76196 * 120.07756 * 179.97438 * 16 15 14 18 18 C 1.81394 * 103.00400 * 0.02694 * 17 16 15 19 19 F 1.39902 * 109.47011 * 299.99906 * 18 17 16 20 20 F 1.39899 * 109.47438 * 59.99699 * 18 17 16 21 21 C 1.38059 * 119.96043 * 99.99815 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 24 24 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 25 25 H 1.07997 * 119.91735 * 0.02562 * 13 12 9 26 26 H 1.08008 * 119.96160 * 180.25467 * 14 13 12 27 27 H 1.08002 * 120.04325 * 179.72987 * 15 14 13 28 28 H 1.08996 * 109.47436 * 180.02562 * 18 17 16 29 29 H 1.07997 * 120.03766 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.8330 -4.0329 -1.1933 14 6 3.7357 -5.0803 -1.2019 15 6 4.0308 -5.7495 -0.0304 16 6 3.4232 -5.3656 1.1589 17 16 3.7960 -6.2168 2.6559 18 6 4.9926 -7.4722 2.1244 19 9 4.4021 -8.3031 1.1662 20 9 6.1127 -6.8438 1.5700 21 6 2.5203 -4.3089 1.1647 22 1 -0.4850 0.8401 -0.0004 23 1 0.9645 -2.5165 -2.0440 24 1 -0.1576 -3.4083 -1.2004 25 1 2.6010 -3.5141 -2.1117 26 1 4.2076 -5.3781 -2.1266 27 1 4.7327 -6.5702 -0.0386 28 1 5.2985 -8.0693 2.9835 29 1 2.0456 -4.0083 2.0869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -64.041833 kcal Electronic energy + Delta-G solvation = -16700.294736 eV Core-core repulsion = 13578.583249 eV Total energy + Delta-G solvation = -3121.711487 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.44989 -47.44456 -38.83481 -34.63428 -31.72394 -30.64664 -29.42643 -27.14998 -26.00334 -23.10214 -22.39061 -20.31013 -18.52955 -18.08429 -17.64655 -16.46116 -16.31503 -15.50789 -14.82044 -14.51578 -14.34297 -14.07084 -13.81730 -13.77583 -13.36460 -12.84651 -12.78160 -12.30813 -12.23541 -11.50340 -11.07955 -10.92766 -10.73739 -10.55151 -10.31537 -9.97278 -9.62627 -9.25451 -8.47355 -8.17907 -7.56971 -7.13273 -5.91230 -4.06459 0.71175 1.58189 1.85139 1.92907 3.31524 3.39943 3.44048 3.50685 4.12456 4.13052 4.22855 4.48464 5.19312 5.25843 5.34084 5.66742 5.81442 5.93317 6.14823 6.25383 6.47839 6.60095 6.85898 6.96056 7.37415 7.49465 7.87681 8.13051 8.57711 8.95358 9.10189 9.62527 11.13079 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.005162 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.578438 B = 5422.686539 C = 5601.723391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.055 0.945 9 C 0.253 3.747 10 H 0.049 0.951 11 N -0.808 5.808 12 C -0.056 4.056 13 C -0.113 4.113 14 C -0.105 4.105 15 C -0.145 4.145 16 C -0.096 4.096 17 S -0.109 6.109 18 C 0.271 3.729 19 F -0.183 7.183 20 F -0.182 7.182 21 C -0.089 4.089 22 H 0.256 0.744 23 H 0.318 0.682 24 H 0.299 0.701 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.152 0.848 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.078 -14.483 2.841 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.123 4.123 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.143 3.857 10 H 0.067 0.933 11 N -0.334 5.334 12 C -0.061 4.061 13 C -0.133 4.133 14 C -0.125 4.125 15 C -0.168 4.168 16 C -0.208 4.208 17 S 0.127 5.873 18 C 0.108 3.892 19 F -0.165 7.165 20 F -0.164 7.164 21 C -0.112 4.112 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.110 0.890 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.169 0.831 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.215 -13.601 4.233 15.967 hybrid contribution 1.627 -0.160 -1.578 2.273 sum 8.842 -13.761 2.655 16.571 Atomic orbital electron populations 1.70115 1.05679 1.25694 1.46512 1.24948 0.94660 0.98594 0.94099 0.86674 0.80295 0.84206 0.77555 1.19844 1.21003 1.21031 1.20846 0.92285 0.89270 1.54631 0.92704 1.18266 0.87471 0.88728 0.91218 0.93343 1.59205 1.27914 1.42026 1.04245 1.21811 0.96968 0.95877 0.91394 1.21124 0.96805 0.96550 0.98833 1.20939 0.98226 0.96289 0.97054 1.21085 1.01746 1.01723 0.92279 1.21332 1.03648 1.01477 0.94314 1.86173 1.51967 1.35816 1.13334 1.24276 0.83774 0.90156 0.90949 1.93104 1.83757 1.72622 1.67013 1.93111 1.53092 1.82747 1.87440 1.20699 0.97364 0.93993 0.99185 0.93428 0.86921 0.89049 0.85871 0.86318 0.86532 0.83110 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.25 12.76 55.43 0.71 -23.55 15 2 C 0.08 2.31 5.39 -17.82 -0.10 2.22 15 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 15 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 7 C -0.53 -14.35 8.71 -34.44 -0.30 -14.65 15 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.25 6.11 2.85 -70.02 -0.20 5.91 15 10 H 0.05 1.28 8.00 -51.93 -0.42 0.87 15 11 N -0.81 -18.41 8.35 -6.65 -0.06 -18.47 15 12 C -0.06 -1.16 4.88 -104.65 -0.51 -1.67 15 13 C -0.11 -2.10 9.29 -39.53 -0.37 -2.47 15 14 C -0.11 -1.74 10.04 -39.62 -0.40 -2.14 15 15 C -0.15 -2.42 8.69 -39.36 -0.34 -2.76 15 16 C -0.10 -1.66 6.11 -39.04 -0.24 -1.89 15 17 S -0.11 -1.49 22.17 -107.50 -2.38 -3.88 15 18 C 0.27 2.90 5.37 101.05 0.54 3.44 15 19 F -0.18 -2.22 15.64 2.25 0.04 -2.19 15 20 F -0.18 -2.28 15.65 2.25 0.04 -2.24 15 21 C -0.09 -1.72 9.41 -39.37 -0.37 -2.09 15 22 H 0.26 7.01 8.31 -40.82 -0.34 6.68 15 23 H 0.32 6.84 7.33 -39.29 -0.29 6.55 15 24 H 0.30 6.10 9.06 -39.29 -0.36 5.75 15 25 H 0.12 2.19 6.65 -52.49 -0.35 1.84 15 26 H 0.12 1.62 8.06 -52.48 -0.42 1.20 15 27 H 0.12 1.77 4.55 -52.49 -0.24 1.53 15 28 H 0.15 0.92 8.14 -51.93 -0.42 0.49 15 29 H 0.13 2.38 8.03 -52.49 -0.42 1.96 15 LS Contribution 272.03 15.07 4.10 4.10 Total: -1.00 -29.76 272.03 -7.32 -37.07 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -2.46 Total: 9.11 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -2.28 Total: -16.12 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.65 Total: -42.01 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.07 Total: -4.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.38 Total: -3.88 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.76 -7.32 -37.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.970 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds