Wall clock time and date at job start Mon Mar 30 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 11 11 N 1.46899 * 109.47038 * 59.71978 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38329 * 119.95740 * 279.71996 * 12 9 7 14 14 C 1.38273 * 120.15773 * 179.77014 * 13 12 9 15 15 C 1.38104 * 120.08296 * 0.51154 * 14 13 12 16 16 C 1.38958 * 119.91687 * 359.74247 * 15 14 13 17 17 S 1.76196 * 120.07756 * 179.97438 * 16 15 14 18 18 C 1.81394 * 103.00400 * 0.02694 * 17 16 15 19 19 F 1.39902 * 109.47011 * 299.99906 * 18 17 16 20 20 F 1.39899 * 109.47438 * 59.99699 * 18 17 16 21 21 C 1.38059 * 119.96043 * 99.99815 * 12 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.00903 * 111.00048 * 60.00129 * 11 9 7 24 24 H 1.00904 * 110.99882 * 183.95319 * 11 9 7 25 25 H 1.07997 * 119.91735 * 0.02562 * 13 12 9 26 26 H 1.08008 * 119.96160 * 180.25467 * 14 13 12 27 27 H 1.08002 * 120.04325 * 179.72987 * 15 14 13 28 28 H 1.08996 * 109.47436 * 180.02562 * 18 17 16 29 29 H 1.07997 * 120.03766 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6242 -2.5609 0.8844 11 7 0.4065 -2.5716 -1.2052 12 6 2.2302 -3.6447 -0.0104 13 6 2.8330 -4.0329 -1.1933 14 6 3.7357 -5.0803 -1.2019 15 6 4.0308 -5.7495 -0.0304 16 6 3.4232 -5.3656 1.1589 17 16 3.7960 -6.2168 2.6559 18 6 4.9926 -7.4722 2.1244 19 9 4.4021 -8.3031 1.1662 20 9 6.1127 -6.8438 1.5700 21 6 2.5203 -4.3089 1.1647 22 1 -0.4850 0.8401 -0.0004 23 1 0.9645 -2.5165 -2.0440 24 1 -0.1576 -3.4083 -1.2004 25 1 2.6010 -3.5141 -2.1117 26 1 4.2076 -5.3781 -2.1266 27 1 4.7327 -6.5702 -0.0386 28 1 5.2985 -8.0693 2.9835 29 1 2.0456 -4.0083 2.0869 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942051.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:12 Heat of formation + Delta-G solvation = -82.661599 kcal Electronic energy + Delta-G solvation = -16701.102150 eV Core-core repulsion = 13578.583249 eV Total energy + Delta-G solvation = -3122.518900 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.36015 -48.36093 -40.29354 -36.42721 -33.71320 -32.04186 -30.99970 -28.14765 -27.87620 -24.80420 -23.78583 -21.93500 -19.60229 -19.00762 -18.54789 -18.48855 -17.62793 -16.90703 -16.55179 -16.21715 -15.68690 -15.27258 -15.20166 -14.69617 -14.60679 -14.45052 -14.28423 -13.94451 -13.46014 -13.28296 -12.82961 -12.75144 -12.37019 -11.98615 -11.73977 -11.45403 -11.35225 -10.86744 -10.57484 -9.73475 -8.97281 -8.74033 -8.00377 -6.22008 -0.24571 0.17908 0.41877 0.72877 1.41356 1.43920 1.54393 2.44263 2.74300 2.74516 3.23668 3.34020 3.40968 3.85753 3.90540 4.19569 4.36623 4.46384 4.54619 4.71890 5.02128 5.16769 5.24645 5.41989 5.72427 5.81264 5.91954 6.15163 6.62651 7.08056 7.23648 7.50528 9.03260 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033622 B = 0.005162 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.578438 B = 5422.686539 C = 5601.723391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.037 3.963 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.044 0.956 9 C 0.259 3.741 10 H 0.012 0.988 11 N -0.817 5.817 12 C -0.077 4.077 13 C -0.122 4.122 14 C -0.098 4.098 15 C -0.145 4.145 16 C -0.102 4.102 17 S -0.112 6.112 18 C 0.277 3.723 19 F -0.189 7.189 20 F -0.190 7.190 21 C -0.108 4.108 22 H 0.256 0.744 23 H 0.325 0.675 24 H 0.312 0.688 25 H 0.127 0.873 26 H 0.154 0.846 27 H 0.136 0.864 28 H 0.209 0.791 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.988 -15.911 2.695 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.167 4.167 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.581 4.581 8 H 0.063 0.937 9 C 0.149 3.851 10 H 0.030 0.970 11 N -0.345 5.345 12 C -0.081 4.081 13 C -0.142 4.142 14 C -0.117 4.117 15 C -0.168 4.168 16 C -0.214 4.214 17 S 0.125 5.875 18 C 0.115 3.885 19 F -0.171 7.171 20 F -0.172 7.172 21 C -0.132 4.132 22 H 0.065 0.935 23 H 0.139 0.861 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.171 0.829 27 H 0.154 0.846 28 H 0.225 0.775 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 9.132 -15.037 4.089 18.062 hybrid contribution 1.086 0.147 -1.491 1.850 sum 10.218 -14.891 2.598 18.245 Atomic orbital electron populations 1.70231 1.06981 1.26404 1.47759 1.25662 0.95436 1.01742 0.93900 0.85685 0.78977 0.80303 0.77603 1.19650 1.20527 1.20663 1.21106 0.91964 0.90926 1.54125 0.93742 1.17879 0.87643 0.89378 0.90220 0.96992 1.59000 1.28291 1.43080 1.04103 1.21439 0.97710 0.95882 0.93108 1.21181 0.97443 0.97513 0.98034 1.21294 0.96955 0.94887 0.98557 1.21405 1.01478 1.01874 0.91997 1.21548 1.02470 1.00837 0.96513 1.86132 1.53262 1.36599 1.11522 1.24793 0.82216 0.89189 0.92324 1.93093 1.83909 1.72502 1.67565 1.93096 1.53319 1.83045 1.87735 1.20658 0.98697 0.95385 0.98461 0.93469 0.86127 0.87657 0.85497 0.82864 0.84623 0.77492 0.86671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.43 12.76 21.45 0.27 -51.15 15 2 C 0.04 2.04 5.39 84.66 0.46 2.49 15 3 Si 0.95 44.02 29.54 68.60 2.03 46.05 15 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 7 C -0.54 -30.02 8.71 25.60 0.22 -29.80 15 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 9 C 0.26 12.97 2.85 43.42 0.12 13.10 15 10 H 0.01 0.68 8.00 -2.38 -0.02 0.66 15 11 N -0.82 -38.16 8.35 -174.95 -1.46 -39.62 15 12 C -0.08 -3.27 4.88 -19.89 -0.10 -3.36 15 13 C -0.12 -4.45 9.29 22.30 0.21 -4.24 15 14 C -0.10 -3.01 10.04 22.25 0.22 -2.78 15 15 C -0.14 -4.48 8.69 22.41 0.19 -4.28 15 16 C -0.10 -3.41 6.11 22.62 0.14 -3.27 15 17 S -0.11 -2.84 22.17 -56.49 -1.25 -4.10 15 18 C 0.28 4.88 5.37 113.37 0.61 5.49 15 19 F -0.19 -3.93 15.64 44.97 0.70 -3.22 15 20 F -0.19 -4.10 15.65 44.97 0.70 -3.39 15 21 C -0.11 -4.29 9.41 22.41 0.21 -4.08 15 22 H 0.26 14.29 8.31 -92.70 -0.77 13.52 15 23 H 0.33 14.19 7.33 -89.69 -0.66 13.53 15 24 H 0.31 13.04 9.06 -89.69 -0.81 12.23 15 25 H 0.13 4.44 6.65 -2.91 -0.02 4.42 15 26 H 0.15 3.62 8.06 -2.91 -0.02 3.60 15 27 H 0.14 3.67 4.55 -2.91 -0.01 3.66 15 28 H 0.21 1.43 8.14 -2.39 -0.02 1.41 15 29 H 0.12 4.63 8.03 -2.91 -0.02 4.61 15 Total: -1.00 -64.85 272.03 3.02 -61.83 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: -0.26 Total: 24.34 kcal Atomic # 6 Polarization: -33.03 SS G_CDS: 2.29 Total: -30.74 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -1.19 Total: -90.77 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 1.41 Total: -6.61 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -1.25 Total: -4.10 kcal Total: -64.85 3.02 -61.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942051.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.830 kcal (2) G-P(sol) polarization free energy of solvation -64.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds