Wall clock time and date at job start Mon Mar 30 2020 07:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48506 * 109.47121 * 239.99434 * 3 2 1 5 5 H 1.48500 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47027 * 119.99814 * 3 2 1 7 7 C 1.37882 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.38790 * 119.96747 * 89.99804 * 10 9 7 12 12 C 1.36185 * 120.77857 * 179.97438 * 11 10 9 13 13 C 1.40959 * 120.42591 * 0.02646 * 12 11 10 14 14 N 1.34667 * 129.69311 * 179.97438 * 13 12 11 15 15 C 1.27932 * 117.84951 * 180.02562 * 14 13 12 16 16 C 1.50699 * 124.23639 * 179.97438 * 15 14 13 17 17 C 1.52993 * 117.50171 * 8.64722 * 16 15 14 18 18 C 1.52992 * 117.49865 * 300.02146 * 16 15 14 19 19 S 1.70649 * 111.52193 * 359.97438 * 15 14 13 20 20 C 1.39917 * 118.50673 * 359.97385 * 13 12 11 21 21 C 1.37658 * 119.96762 * 269.98345 * 10 9 7 22 22 H 0.96997 * 119.99700 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47097 * 59.99801 * 9 7 2 24 24 H 1.09001 * 109.47027 * 299.99851 * 9 7 2 25 25 H 1.08000 * 119.60979 * 0.27736 * 11 10 9 26 26 H 1.07999 * 119.78480 * 180.02562 * 12 11 10 27 27 H 1.09005 * 115.54401 * 154.35624 * 16 15 14 28 28 H 1.09007 * 117.49866 * 359.97438 * 17 16 15 29 29 H 1.09002 * 117.50108 * 145.02004 * 17 16 15 30 30 H 1.08998 * 117.50019 * 214.98043 * 18 16 15 31 31 H 1.09000 * 117.50323 * 359.97438 * 18 16 15 32 32 H 1.08001 * 120.01862 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6807 -4.1716 1.2029 12 6 3.5651 -5.2070 1.2222 13 6 4.0400 -5.7627 0.0169 14 7 4.9056 -6.7752 -0.1811 15 6 5.1820 -7.0978 -1.3878 16 6 6.1290 -8.2046 -1.7739 17 6 6.6411 -9.1175 -0.6581 18 6 7.5787 -8.0919 -1.2982 19 16 4.3439 -6.1177 -2.5055 20 6 3.5819 -5.2268 -1.1917 21 6 2.6767 -4.1676 -1.1920 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.3219 -3.7588 2.1342 26 1 3.9047 -5.6049 2.1670 27 1 5.9534 -8.6538 -2.7515 28 1 6.2933 -8.9173 0.3555 29 1 6.8025 -10.1678 -0.9013 30 1 8.3570 -8.4674 -1.9625 31 1 7.8477 -7.2170 -0.7064 32 1 2.3258 -3.7568 -2.1272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260942108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:06 Heat of formation + Delta-G solvation = 66.292924 kcal Electronic energy + Delta-G solvation = -15760.229834 eV Core-core repulsion = 13198.399616 eV Total energy + Delta-G solvation = -2561.830218 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.08482 -37.93301 -36.01084 -33.15732 -30.86244 -30.33562 -27.30821 -25.21887 -23.05960 -22.98961 -22.51838 -20.91460 -19.56631 -18.16589 -16.41133 -16.06534 -15.74669 -15.13846 -14.72222 -14.45652 -14.06032 -13.76565 -13.35570 -12.53095 -12.36482 -12.07722 -11.85028 -11.67200 -11.44034 -11.33160 -10.79233 -10.74138 -10.63355 -10.42703 -10.32945 -9.76841 -9.74378 -9.47949 -9.37425 -8.49836 -8.01225 -7.55645 -6.12066 -4.17123 0.80225 1.49686 1.65911 2.01681 2.70022 3.28136 3.32481 3.35771 3.69887 3.99505 4.19576 4.41177 4.64461 4.68357 4.82302 5.06904 5.22950 5.32412 5.46078 5.59983 5.65456 5.78806 5.85151 5.87303 6.02339 6.13044 6.36267 6.59114 6.81372 6.93528 7.24691 7.43882 7.64849 7.82762 7.90725 8.19657 8.87474 9.47415 10.97484 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.004326 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.464686 B = 6470.241956 C = 6562.966193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.007 4.007 11 C -0.102 4.102 12 C -0.068 4.068 13 C 0.051 3.949 14 N -0.461 5.461 15 C 0.099 3.901 16 C -0.095 4.095 17 C -0.151 4.151 18 C -0.157 4.157 19 S 0.074 5.926 20 C -0.163 4.163 21 C -0.089 4.089 22 H 0.264 0.736 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.134 0.866 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 -15.001 -2.982 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.011 4.011 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.067 4.067 14 N -0.174 5.174 15 C -0.185 4.185 16 C -0.117 4.117 17 C -0.190 4.190 18 C -0.196 4.196 19 S 0.330 5.670 20 C -0.281 4.281 21 C -0.112 4.112 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.152 0.848 26 H 0.144 0.856 27 H 0.144 0.856 28 H 0.126 0.874 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.301 -15.159 -3.646 18.687 hybrid contribution 0.143 1.335 0.737 1.532 sum 10.444 -13.823 -2.908 17.567 Atomic orbital electron populations 1.69938 1.06043 1.27140 1.49947 1.24997 0.94899 0.99294 0.94930 0.86570 0.79541 0.82625 0.78826 1.20113 1.21136 1.20070 1.20981 0.93057 0.89645 1.51823 0.92403 1.18417 0.92372 0.89167 0.98948 1.20763 0.95040 0.94257 0.91066 1.20797 0.96965 0.95346 0.99108 1.20282 0.97326 0.96343 0.95006 1.18932 0.98483 0.95273 0.94040 1.65932 1.15015 1.14875 1.21587 1.25366 1.01400 1.00714 0.91029 1.20520 0.93891 0.97142 1.00140 1.22995 1.02059 0.95704 0.98239 1.23029 0.91027 1.02137 1.03370 1.83642 1.42713 1.30337 1.10275 1.23758 1.05356 1.03808 0.95218 1.20273 0.97013 0.94472 0.99405 0.92630 0.94886 0.94669 0.84845 0.85642 0.85616 0.87426 0.88213 0.87982 0.88328 0.85413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.06 9.09 -34.44 -0.31 -14.37 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.05 1.18 5.10 -29.04 -0.15 1.04 16 10 C -0.01 -0.16 5.07 -104.63 -0.53 -0.69 16 11 C -0.10 -1.92 9.60 -40.12 -0.39 -2.31 16 12 C -0.07 -1.21 10.05 -39.29 -0.39 -1.60 16 13 C 0.05 0.94 7.00 -84.96 -0.59 0.35 16 14 N -0.46 -7.90 9.98 -9.09 -0.09 -7.99 16 15 C 0.10 1.47 6.89 -13.90 -0.10 1.38 16 16 C -0.10 -1.04 6.26 -91.78 -0.57 -1.61 16 17 C -0.15 -1.44 10.10 -26.74 -0.27 -1.71 16 18 C -0.16 -1.47 10.23 -26.74 -0.27 -1.74 16 19 S 0.07 1.12 23.11 -107.50 -2.48 -1.36 16 20 C -0.16 -3.05 6.56 -38.55 -0.25 -3.30 16 21 C -0.09 -1.77 9.72 -39.39 -0.38 -2.15 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 24 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 25 H 0.13 2.32 8.06 -52.49 -0.42 1.90 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 27 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.11 1.21 7.81 -51.93 -0.41 0.80 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 295.13 15.07 4.45 4.45 Total: -1.00 -29.64 295.13 -10.47 -40.11 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -3.75 Total: -1.25 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -4.31 Total: -25.15 kcal Atomic # 7 Polarization: -33.58 SS G_CDS: 0.65 Total: -32.94 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.48 Total: -1.36 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.64 -10.47 -40.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.407 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds