Wall clock time and date at job start Mon Mar 30 2020 07:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00127 * 2 1 4 4 H 1.48506 * 109.47121 * 239.99434 * 3 2 1 5 5 H 1.48500 * 109.47447 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47027 * 119.99814 * 3 2 1 7 7 C 1.37882 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00188 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47231 * 179.97438 * 9 7 2 11 11 C 1.38790 * 119.96747 * 89.99804 * 10 9 7 12 12 C 1.36185 * 120.77857 * 179.97438 * 11 10 9 13 13 C 1.40959 * 120.42591 * 0.02646 * 12 11 10 14 14 N 1.34667 * 129.69311 * 179.97438 * 13 12 11 15 15 C 1.27932 * 117.84951 * 180.02562 * 14 13 12 16 16 C 1.50699 * 124.23639 * 179.97438 * 15 14 13 17 17 C 1.52993 * 117.50171 * 8.64722 * 16 15 14 18 18 C 1.52992 * 117.49865 * 300.02146 * 16 15 14 19 19 S 1.70649 * 111.52193 * 359.97438 * 15 14 13 20 20 C 1.39917 * 118.50673 * 359.97385 * 13 12 11 21 21 C 1.37658 * 119.96762 * 269.98345 * 10 9 7 22 22 H 0.96997 * 119.99700 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47097 * 59.99801 * 9 7 2 24 24 H 1.09001 * 109.47027 * 299.99851 * 9 7 2 25 25 H 1.08000 * 119.60979 * 0.27736 * 11 10 9 26 26 H 1.07999 * 119.78480 * 180.02562 * 12 11 10 27 27 H 1.09005 * 115.54401 * 154.35624 * 16 15 14 28 28 H 1.09007 * 117.49866 * 359.97438 * 17 16 15 29 29 H 1.09002 * 117.50108 * 145.02004 * 17 16 15 30 30 H 1.08998 * 117.50019 * 214.98043 * 18 16 15 31 31 H 1.09000 * 117.50323 * 359.97438 * 18 16 15 32 32 H 1.08001 * 120.01862 * 0.02562 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6807 -4.1716 1.2029 12 6 3.5651 -5.2070 1.2222 13 6 4.0400 -5.7627 0.0169 14 7 4.9056 -6.7752 -0.1811 15 6 5.1820 -7.0978 -1.3878 16 6 6.1290 -8.2046 -1.7739 17 6 6.6411 -9.1175 -0.6581 18 6 7.5787 -8.0919 -1.2982 19 16 4.3439 -6.1177 -2.5055 20 6 3.5819 -5.2268 -1.1917 21 6 2.6767 -4.1676 -1.1920 22 1 -0.4849 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 2.3219 -3.7588 2.1342 26 1 3.9047 -5.6049 2.1670 27 1 5.9534 -8.6538 -2.7515 28 1 6.2933 -8.9173 0.3555 29 1 6.8025 -10.1678 -0.9013 30 1 8.3570 -8.4674 -1.9625 31 1 7.8477 -7.2170 -0.7064 32 1 2.3258 -3.7568 -2.1272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942108.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:06 Heat of formation + Delta-G solvation = 51.110915 kcal Electronic energy + Delta-G solvation = -15760.888175 eV Core-core repulsion = 13198.399616 eV Total energy + Delta-G solvation = -2562.488559 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.43388 -39.08322 -37.19610 -35.13297 -32.50205 -31.86189 -28.93457 -26.67439 -24.75941 -24.36772 -23.25424 -22.38872 -20.76447 -19.45253 -18.52928 -17.16082 -17.13875 -16.52432 -16.33854 -15.80184 -15.35212 -15.09029 -14.75622 -14.47080 -13.66483 -13.57169 -13.23533 -13.12753 -12.92886 -12.56527 -12.51400 -12.36457 -11.81875 -11.71148 -11.68863 -11.43361 -11.22873 -11.13014 -10.63301 -10.61479 -9.40278 -9.00512 -8.22047 -6.35815 -0.53983 0.18456 0.21837 0.71365 1.32030 1.41073 1.41917 1.50667 2.38143 2.70331 2.79811 3.01000 3.09077 3.59090 3.82995 3.89364 4.06213 4.08378 4.27990 4.32749 4.37680 4.64740 4.80165 4.88409 4.94429 5.07135 5.15992 5.22322 5.29501 5.30496 5.31883 5.70813 5.76788 5.85025 6.13022 6.60501 6.75623 7.32897 8.86616 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.004326 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.464686 B = 6470.241956 C = 6562.966193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.058 3.942 10 C -0.036 4.036 11 C -0.104 4.104 12 C -0.067 4.067 13 C 0.047 3.953 14 N -0.485 5.485 15 C 0.112 3.888 16 C -0.115 4.115 17 C -0.144 4.144 18 C -0.145 4.145 19 S 0.116 5.884 20 C -0.194 4.194 21 C -0.092 4.092 22 H 0.267 0.733 23 H 0.009 0.991 24 H 0.017 0.983 25 H 0.142 0.858 26 H 0.152 0.848 27 H 0.155 0.845 28 H 0.087 0.913 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.736 -16.553 -3.633 21.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.570 4.570 8 H 0.072 0.928 9 C 0.021 3.979 10 C -0.040 4.040 11 C -0.124 4.124 12 C -0.087 4.087 13 C -0.071 4.071 14 N -0.199 5.199 15 C -0.172 4.172 16 C -0.136 4.136 17 C -0.183 4.183 18 C -0.184 4.184 19 S 0.373 5.627 20 C -0.312 4.312 21 C -0.115 4.115 22 H 0.076 0.924 23 H 0.028 0.972 24 H 0.035 0.965 25 H 0.160 0.840 26 H 0.170 0.830 27 H 0.172 0.828 28 H 0.106 0.894 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.799 -16.712 -4.304 21.486 hybrid contribution -0.533 1.634 0.859 1.921 sum 12.266 -15.078 -3.446 19.740 Atomic orbital electron populations 1.70054 1.07552 1.28138 1.50862 1.25857 0.95730 1.02894 0.94429 0.85533 0.78351 0.78281 0.79116 1.19520 1.20451 1.19229 1.21299 0.93062 0.91081 1.51599 0.92801 1.18131 0.92624 0.90302 0.96825 1.20438 0.96162 0.94608 0.92781 1.20829 0.97279 0.95774 0.98539 1.20492 0.96543 0.95610 0.96089 1.19287 0.98194 0.95320 0.94296 1.66051 1.15914 1.15252 1.22654 1.26259 1.00212 1.00361 0.90402 1.20896 0.94069 0.96675 1.01998 1.23077 1.01235 0.97259 0.96682 1.23126 0.90657 1.01445 1.03137 1.83472 1.41572 1.29064 1.08553 1.23962 1.05796 1.04113 0.97323 1.20196 0.97449 0.95061 0.98795 0.92429 0.97250 0.96483 0.83992 0.83024 0.82783 0.89449 0.85182 0.84793 0.90098 0.85841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.75 13.29 21.45 0.28 -54.46 16 2 C 0.01 0.55 5.46 84.66 0.46 1.01 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -29.89 9.09 25.60 0.23 -29.66 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.06 3.04 5.10 29.10 0.15 3.19 16 10 C -0.04 -1.61 5.07 -19.87 -0.10 -1.71 16 11 C -0.10 -4.00 9.60 21.92 0.21 -3.79 16 12 C -0.07 -2.32 10.05 22.46 0.23 -2.10 16 13 C 0.05 1.73 7.00 39.78 0.28 2.01 16 14 N -0.48 -15.89 9.98 -182.52 -1.82 -17.72 16 15 C 0.11 3.06 6.89 88.68 0.61 3.67 16 16 C -0.11 -2.08 6.26 -11.55 -0.07 -2.16 16 17 C -0.14 -2.23 10.10 30.59 0.31 -1.93 16 18 C -0.14 -2.18 10.23 30.59 0.31 -1.86 16 19 S 0.12 3.33 23.11 -56.49 -1.31 2.02 16 20 C -0.19 -7.19 6.56 22.94 0.15 -7.04 16 21 C -0.09 -3.80 9.72 22.40 0.22 -3.58 16 22 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 23 H 0.01 0.51 8.08 -2.39 -0.02 0.49 16 24 H 0.02 0.92 8.09 -2.39 -0.02 0.90 16 25 H 0.14 5.06 8.06 -2.91 -0.02 5.04 16 26 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 27 H 0.15 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.09 1.77 7.81 -2.38 -0.02 1.75 16 29 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -65.10 295.13 3.29 -61.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.12 Total: 6.54 kcal Atomic # 6 Polarization: -46.93 SS G_CDS: 2.99 Total: -43.94 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.54 Total: -72.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.31 Total: 2.02 kcal Total: -65.10 3.29 -61.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942108.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.913 kcal (2) G-P(sol) polarization free energy of solvation -65.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds