Wall clock time and date at job start Mon Mar 30 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47303 * 300.00452 * 3 2 1 6 6 H 1.48502 * 109.46962 * 60.00212 * 3 2 1 7 7 C 1.37877 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99795 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.37300 * 57.80595 * 9 7 2 11 11 C 1.54147 * 110.34573 * 295.60910 * 9 7 2 12 12 C 1.54201 * 101.68690 * 267.71421 * 11 9 7 13 13 C 1.52181 * 104.84548 * 333.50603 * 12 11 9 14 14 S 1.76532 * 139.17428 * 197.44376 * 13 12 11 15 15 C 1.75534 * 91.26586 * 179.74628 * 14 13 12 16 16 C 1.33657 * 109.62372 * 0.35269 * 15 14 13 17 17 C 1.48586 * 122.39378 * 179.87338 * 16 15 14 18 18 C 1.41738 * 126.43424 * 309.70790 * 17 16 15 19 19 C 1.34664 * 107.38596 * 179.97438 * 18 17 16 20 20 N 1.36374 * 108.50590 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.53971 * 180.02562 * 20 19 18 22 22 C 1.35903 * 126.43526 * 129.39747 * 17 16 15 23 23 C 1.33601 * 110.66243 * 17.41847 * 13 12 11 24 24 H 0.97002 * 120.00388 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.99405 * 149.61162 * 11 9 7 26 26 H 1.09000 * 111.00698 * 25.82604 * 11 9 7 27 27 H 1.09001 * 110.36965 * 214.66229 * 12 11 9 28 28 H 1.09006 * 110.46118 * 92.39458 * 12 11 9 29 29 H 1.07996 * 125.19341 * 180.23279 * 15 14 13 30 30 H 1.08004 * 126.30663 * 0.02562 * 18 17 16 31 31 H 1.08001 * 125.74640 * 179.97438 * 19 18 17 32 32 H 1.07993 * 125.97827 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5895 -2.5554 -0.8650 11 6 0.4425 -2.6512 1.3031 12 6 1.4369 -3.4159 2.1999 13 6 2.3265 -4.1815 1.2312 14 16 3.4535 -5.5402 1.2414 15 6 3.7447 -5.3620 -0.4804 16 6 3.0257 -4.3397 -0.9538 17 6 3.0612 -3.9360 -2.3834 18 6 4.2211 -3.6952 -3.1615 19 6 3.8122 -3.3547 -4.3986 20 7 2.4488 -3.3724 -4.4240 21 1 1.8965 -3.1662 -5.1943 22 6 1.9877 -3.7341 -3.1919 23 6 2.2266 -3.6753 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 -0.4618 -3.2363 1.1357 26 1 0.2016 -1.6774 1.7293 27 1 0.9045 -4.1072 2.8532 28 1 2.0313 -2.7187 2.7905 29 1 4.4056 -5.9825 -1.0674 30 1 5.2444 -3.7717 -2.8247 31 1 4.4556 -3.1081 -5.2302 32 1 0.9510 -3.8394 -2.9082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:17 Heat of formation + Delta-G solvation = 79.077623 kcal Electronic energy + Delta-G solvation = -16762.919882 eV Core-core repulsion = 14201.644051 eV Total energy + Delta-G solvation = -2561.275832 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.52231 -38.33241 -34.30980 -32.22477 -30.14945 -28.49386 -27.53432 -26.63360 -23.95847 -22.20037 -20.35213 -19.86404 -18.94216 -17.92161 -17.01137 -16.14770 -15.90187 -14.54540 -13.95557 -13.73066 -13.47703 -13.24363 -12.89161 -12.54764 -12.20857 -12.06991 -11.66840 -11.50826 -11.02653 -10.78019 -10.71793 -10.62914 -10.27597 -10.14070 -9.83958 -9.39954 -9.05199 -8.47970 -8.33060 -7.88069 -7.43035 -7.15001 -5.98183 -4.00929 1.80190 2.31677 2.72151 2.80028 3.26786 3.30942 3.39213 3.46076 3.77381 3.93214 4.48990 5.31831 5.45222 5.56641 5.74919 5.78505 5.90058 6.01331 6.13011 6.21394 6.37976 6.57745 6.62340 6.69739 6.99657 7.10453 7.18830 7.33755 7.42246 7.46897 7.59510 7.65761 7.91591 7.98072 8.00109 8.45679 9.01100 9.61936 11.09094 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.010132 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.116607 B = 2762.938894 C = 4075.015138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.490 4.490 8 H 0.055 0.945 9 C 0.111 3.889 10 H 0.034 0.966 11 C -0.100 4.100 12 C -0.032 4.032 13 C -0.211 4.211 14 S 0.048 5.952 15 C -0.227 4.227 16 C 0.006 3.994 17 C -0.099 4.099 18 C -0.184 4.184 19 C -0.028 4.028 20 N -0.562 5.562 21 H 0.411 0.589 22 C 0.016 3.984 23 C -0.076 4.076 24 H 0.259 0.741 25 H 0.038 0.962 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.156 0.844 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -8.281 -4.657 10.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.528 4.528 8 H 0.074 0.926 9 C 0.091 3.909 10 H 0.052 0.948 11 C -0.139 4.139 12 C -0.072 4.072 13 C -0.327 4.327 14 S 0.313 5.687 15 C -0.361 4.361 16 C -0.007 4.007 17 C -0.108 4.108 18 C -0.209 4.209 19 C -0.158 4.158 20 N -0.156 5.156 21 H 0.247 0.753 22 C -0.115 4.115 23 C -0.087 4.087 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.148 0.852 31 H 0.175 0.825 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.227 -9.165 -3.639 10.729 hybrid contribution -0.061 2.026 -1.417 2.473 sum 4.166 -7.139 -5.056 9.690 Atomic orbital electron populations 1.69962 1.05718 1.26314 1.51166 1.24901 0.94813 0.98762 0.95445 0.86590 0.80399 0.83970 0.77452 1.19755 1.21193 1.21068 1.20995 0.92949 0.89371 1.49499 0.92642 1.18266 0.90141 0.88368 0.94171 0.94802 1.22264 0.94873 0.99456 0.97348 1.20807 0.95039 0.95740 0.95624 1.25657 1.05198 1.00860 1.00994 1.83426 1.44735 1.33667 1.06845 1.25021 1.09236 1.05141 0.96726 1.16937 0.97077 0.94623 0.92101 1.17816 0.92716 1.08650 0.91635 1.20834 0.98026 1.08909 0.93126 1.21580 0.83459 1.11021 0.99696 1.41871 1.06841 1.55244 1.11668 0.75298 1.21879 0.99004 1.06242 0.84421 1.21246 0.98832 0.97574 0.91037 0.93143 0.94320 0.89205 0.93177 0.91120 0.82691 0.85213 0.82501 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 12.08 55.43 0.67 -24.32 16 2 C 0.06 1.69 5.12 -17.82 -0.09 1.60 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.49 -13.50 8.53 -34.44 -0.29 -13.79 16 8 H 0.06 1.60 7.76 -52.49 -0.41 1.19 16 9 C 0.11 2.79 2.78 -91.27 -0.25 2.53 16 10 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.10 -2.32 6.25 -25.50 -0.16 -2.48 16 12 C -0.03 -0.67 6.78 -26.52 -0.18 -0.85 16 13 C -0.21 -4.48 7.33 -35.20 -0.26 -4.73 16 14 S 0.05 0.85 23.33 -107.50 -2.51 -1.66 16 15 C -0.23 -4.14 10.94 29.13 0.32 -3.82 16 16 C 0.01 0.13 5.68 -106.20 -0.60 -0.48 16 17 C -0.10 -1.93 5.73 -105.13 -0.60 -2.53 16 18 C -0.18 -3.15 10.81 -39.51 -0.43 -3.58 16 19 C -0.03 -0.40 11.91 -16.80 -0.20 -0.60 16 20 N -0.56 -8.01 6.07 -12.62 -0.08 -8.08 16 21 H 0.41 4.33 8.96 -40.82 -0.37 3.96 16 22 C 0.02 0.29 11.88 -16.34 -0.19 0.10 16 23 C -0.08 -1.74 5.63 -104.15 -0.59 -2.32 16 24 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.09 2.27 6.69 -51.93 -0.35 1.92 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 30 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 31 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.16 2.77 8.06 -52.49 -0.42 2.35 16 LS Contribution 288.24 15.07 4.34 4.34 Total: -1.00 -30.22 288.24 -9.76 -39.98 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -3.64 Total: 4.19 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: -3.53 Total: -30.95 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.59 Total: -32.40 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.22 -9.76 -39.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.059 kcal (2) G-P(sol) polarization free energy of solvation -30.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds