Wall clock time and date at job start Mon Mar 30 2020 07:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99866 * 2 1 4 4 H 1.48493 * 109.47253 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47303 * 300.00452 * 3 2 1 6 6 H 1.48502 * 109.46962 * 60.00212 * 3 2 1 7 7 C 1.37877 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99795 * 359.97438 * 7 2 1 10 10 H 1.08996 * 110.37300 * 57.80595 * 9 7 2 11 11 C 1.54147 * 110.34573 * 295.60910 * 9 7 2 12 12 C 1.54201 * 101.68690 * 267.71421 * 11 9 7 13 13 C 1.52181 * 104.84548 * 333.50603 * 12 11 9 14 14 S 1.76532 * 139.17428 * 197.44376 * 13 12 11 15 15 C 1.75534 * 91.26586 * 179.74628 * 14 13 12 16 16 C 1.33657 * 109.62372 * 0.35269 * 15 14 13 17 17 C 1.48586 * 122.39378 * 179.87338 * 16 15 14 18 18 C 1.41738 * 126.43424 * 309.70790 * 17 16 15 19 19 C 1.34664 * 107.38596 * 179.97438 * 18 17 16 20 20 N 1.36374 * 108.50590 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.53971 * 180.02562 * 20 19 18 22 22 C 1.35903 * 126.43526 * 129.39747 * 17 16 15 23 23 C 1.33601 * 110.66243 * 17.41847 * 13 12 11 24 24 H 0.97002 * 120.00388 * 359.97438 * 1 2 3 25 25 H 1.08997 * 110.99405 * 149.61162 * 11 9 7 26 26 H 1.09000 * 111.00698 * 25.82604 * 11 9 7 27 27 H 1.09001 * 110.36965 * 214.66229 * 12 11 9 28 28 H 1.09006 * 110.46118 * 92.39458 * 12 11 9 29 29 H 1.07996 * 125.19341 * 180.23279 * 15 14 13 30 30 H 1.08004 * 126.30663 * 0.02562 * 18 17 16 31 31 H 1.08001 * 125.74640 * 179.97438 * 19 18 17 32 32 H 1.07993 * 125.97827 * 359.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.5895 -2.5554 -0.8650 11 6 0.4425 -2.6512 1.3031 12 6 1.4369 -3.4159 2.1999 13 6 2.3265 -4.1815 1.2312 14 16 3.4535 -5.5402 1.2414 15 6 3.7447 -5.3620 -0.4804 16 6 3.0257 -4.3397 -0.9538 17 6 3.0612 -3.9360 -2.3834 18 6 4.2211 -3.6952 -3.1615 19 6 3.8122 -3.3547 -4.3986 20 7 2.4488 -3.3724 -4.4240 21 1 1.8965 -3.1662 -5.1943 22 6 1.9877 -3.7341 -3.1919 23 6 2.2266 -3.6753 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 -0.4618 -3.2363 1.1357 26 1 0.2016 -1.6774 1.7293 27 1 0.9045 -4.1072 2.8532 28 1 2.0313 -2.7187 2.7905 29 1 4.4056 -5.9825 -1.0674 30 1 5.2444 -3.7717 -2.8247 31 1 4.4556 -3.1081 -5.2302 32 1 0.9510 -3.8394 -2.9082 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946655.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:16 Heat of formation + Delta-G solvation = 63.280581 kcal Electronic energy + Delta-G solvation = -16763.604893 eV Core-core repulsion = 14201.644051 eV Total energy + Delta-G solvation = -2561.960843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.78129 -39.98261 -35.98699 -34.19953 -31.49104 -29.97274 -29.25304 -28.24434 -25.94591 -23.65175 -21.79600 -21.48127 -20.34788 -19.27153 -18.73726 -17.91541 -17.55425 -16.53368 -15.74544 -15.09309 -14.78926 -14.56555 -14.42314 -14.04982 -13.84154 -13.66165 -13.33998 -13.09036 -12.93410 -12.63465 -12.38060 -12.27048 -12.01321 -11.89203 -11.72941 -11.22128 -11.04320 -10.42455 -9.82026 -9.18467 -9.01597 -8.56229 -8.07819 -6.18519 0.27672 0.81435 1.23698 1.36952 1.39340 1.45165 1.51491 1.84034 2.39765 2.51049 2.64421 3.19254 4.01848 4.10043 4.38115 4.45373 4.46791 4.51089 4.58839 4.80158 4.85221 4.94613 5.20520 5.29205 5.31674 5.34338 5.53108 5.61075 5.70903 5.78344 5.89620 6.03664 6.11725 6.30701 6.39828 6.86205 6.92091 7.46813 8.97268 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.014252 B = 0.010132 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.116607 B = 2762.938894 C = 4075.015138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.501 4.501 8 H 0.035 0.965 9 C 0.110 3.890 10 H 0.001 0.999 11 C -0.097 4.097 12 C -0.027 4.027 13 C -0.232 4.232 14 S 0.116 5.884 15 C -0.219 4.219 16 C -0.023 4.023 17 C -0.129 4.129 18 C -0.216 4.216 19 C -0.004 4.004 20 N -0.549 5.549 21 H 0.429 0.571 22 C -0.006 4.006 23 C -0.103 4.103 24 H 0.261 0.739 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.183 0.817 30 H 0.138 0.862 31 H 0.202 0.798 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.364 -8.972 -5.126 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.771 3.229 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.090 3.910 10 H 0.019 0.981 11 C -0.136 4.136 12 C -0.066 4.066 13 C -0.348 4.348 14 S 0.382 5.618 15 C -0.353 4.353 16 C -0.036 4.036 17 C -0.138 4.138 18 C -0.241 4.241 19 C -0.135 4.135 20 N -0.144 5.144 21 H 0.268 0.732 22 C -0.138 4.138 23 C -0.114 4.114 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.201 0.799 30 H 0.156 0.844 31 H 0.218 0.782 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.705 -9.857 -4.121 12.112 hybrid contribution -0.507 2.188 -1.314 2.602 sum 5.198 -7.670 -5.435 10.741 Atomic orbital electron populations 1.70054 1.06717 1.27079 1.51528 1.25532 0.95582 1.01511 0.95134 0.85709 0.78936 0.80482 0.77799 1.20065 1.20592 1.20165 1.21089 0.92019 0.91057 1.49821 0.94683 1.18098 0.90398 0.88925 0.93603 0.98057 1.22097 0.95719 0.98715 0.97111 1.20699 0.94555 0.96014 0.95343 1.25890 1.06120 1.02351 1.00442 1.83115 1.42259 1.30623 1.05791 1.25419 1.08225 1.04142 0.97553 1.17126 0.97898 0.95690 0.92858 1.18089 0.94210 1.09889 0.91597 1.21069 0.97934 1.10895 0.94161 1.22214 0.83522 1.07845 0.99937 1.41883 1.07305 1.54027 1.11229 0.73186 1.21840 0.98625 1.07515 0.85862 1.21152 0.99812 0.97690 0.92736 0.92945 0.93762 0.91751 0.90171 0.91480 0.79944 0.84445 0.78167 0.82719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.45 12.08 21.45 0.26 -52.19 16 2 C 0.02 1.18 5.12 84.66 0.43 1.61 16 3 Si 0.94 44.65 29.54 68.60 2.03 46.67 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 7 C -0.50 -28.57 8.53 25.60 0.22 -28.36 16 8 H 0.03 2.09 7.76 -2.91 -0.02 2.07 16 9 C 0.11 5.76 2.78 -11.21 -0.03 5.73 16 10 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 11 C -0.10 -4.64 6.25 31.39 0.20 -4.45 16 12 C -0.03 -1.09 6.78 30.73 0.21 -0.88 16 13 C -0.23 -9.70 7.33 25.11 0.18 -9.52 16 14 S 0.12 3.87 23.33 -56.49 -1.32 2.55 16 15 C -0.22 -7.61 10.94 66.78 0.73 -6.88 16 16 C -0.02 -0.94 5.68 -20.88 -0.12 -1.06 16 17 C -0.13 -5.03 5.73 -20.19 -0.12 -5.15 16 18 C -0.22 -7.17 10.81 22.32 0.24 -6.93 16 19 C 0.00 -0.11 11.91 83.17 0.99 0.88 16 20 N -0.55 -14.96 6.07 -193.84 -1.18 -16.14 16 21 H 0.43 8.32 8.96 -92.71 -0.83 7.49 16 22 C -0.01 -0.20 11.88 83.43 0.99 0.79 16 23 C -0.10 -4.77 5.63 -19.56 -0.11 -4.88 16 24 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 3.37 6.69 -2.39 -0.02 3.36 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 28 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 29 H 0.18 5.21 8.06 -2.91 -0.02 5.19 16 30 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.16 5.63 8.06 -2.91 -0.02 5.61 16 Total: -1.00 -66.32 288.24 3.92 -62.40 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.31 Total: 15.78 kcal Atomic # 6 Polarization: -62.90 SS G_CDS: 3.82 Total: -59.08 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: -0.92 Total: -68.33 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -1.32 Total: 2.55 kcal Total: -66.32 3.92 -62.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946655.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.682 kcal (2) G-P(sol) polarization free energy of solvation -66.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds