Wall clock time and date at job start Mon Mar 30 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76196 * 102.99925 * 2 1 4 4 C 1.38937 * 120.07438 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.99157 * 179.76779 * 4 3 2 6 6 C 1.38277 * 120.13176 * 0.50862 * 5 4 3 7 7 C 1.50703 * 119.92834 * 179.76469 * 6 5 4 8 8 H 1.08994 * 109.47275 * 144.72706 * 7 6 5 9 9 N 1.46898 * 109.46797 * 24.72221 * 7 6 5 10 10 C 1.50700 * 109.47148 * 264.72482 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 179.97438 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 C 1.38509 * 120.14550 * 359.49189 * 6 5 4 19 19 F 1.35104 * 119.99495 * 180.27800 * 18 6 5 20 20 C 1.38458 * 120.00779 * 0.25246 * 18 6 5 21 21 F 1.35104 * 120.06655 * 180.02562 * 20 18 6 22 22 H 1.08996 * 109.46783 * 60.00236 * 1 2 3 23 23 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46910 * 300.00014 * 1 2 3 25 25 H 1.07996 * 120.00697 * 0.02562 * 4 3 2 26 26 H 1.07997 * 119.93623 * 180.27621 * 5 4 3 27 27 H 1.00892 * 111.00332 * 300.00256 * 9 7 6 28 28 H 1.00905 * 110.99665 * 63.96030 * 9 7 6 29 29 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1955 2.6657 -0.0005 5 6 1.5081 4.0110 0.0043 6 6 2.8301 4.4165 -0.0009 7 6 3.1660 5.8856 -0.0009 8 1 4.0673 6.0523 0.5888 9 7 2.0511 6.6427 0.5837 10 6 3.3993 6.3476 -1.4163 11 1 3.3126 5.6474 -2.2340 12 6 3.7224 7.6642 -1.6674 13 7 3.8275 8.5169 -0.6717 14 14 4.0109 8.2370 -3.4219 15 1 4.3407 9.6848 -3.4220 16 1 5.1379 7.4719 -4.0133 17 1 2.7827 8.0096 -4.2251 18 6 3.8464 3.4754 -0.0004 19 9 5.1370 3.8749 0.0002 20 6 3.5397 2.1252 0.0001 21 9 4.5300 1.2062 0.0011 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.1623 2.3514 -0.0005 26 1 0.7185 4.7478 0.0084 27 1 1.2033 6.5047 0.0545 28 1 1.9164 6.3972 1.5531 29 1 3.6773 8.2195 0.2394 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260947691.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:17 Heat of formation + Delta-G solvation = -84.990353 kcal Electronic energy + Delta-G solvation = -17092.798512 eV Core-core repulsion = 13970.178629 eV Total energy + Delta-G solvation = -3122.619883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.59397 -49.66683 -40.29217 -36.85616 -33.67495 -31.95235 -30.97953 -29.72257 -27.84507 -25.21257 -23.84787 -22.49409 -19.55733 -19.09114 -18.59763 -18.03629 -17.49431 -17.08115 -16.50823 -16.10948 -16.07587 -15.65283 -15.51169 -15.33899 -14.60028 -14.47732 -14.14513 -13.96305 -13.55408 -13.31014 -13.15912 -12.79609 -12.56064 -12.24054 -11.90671 -11.32780 -11.21891 -10.55107 -10.38502 -9.91715 -9.47148 -8.55372 -8.38235 -6.30449 -0.24961 -0.19796 0.29340 1.35199 1.55219 1.62444 1.81673 2.17715 2.62173 2.66866 3.25988 3.31864 3.56702 3.65609 3.93453 4.08100 4.28944 4.29543 4.37241 4.54183 4.68368 4.85767 4.88438 4.94498 5.26845 5.55254 5.84713 6.13801 6.57710 6.73448 6.99470 7.60104 8.93840 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.029164 B = 0.006068 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.866295 B = 4613.301026 C = 4876.012024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.119 6.119 3 C -0.115 4.115 4 C -0.095 4.095 5 C -0.085 4.085 6 C -0.100 4.100 7 C 0.247 3.753 8 H 0.007 0.993 9 N -0.831 5.831 10 C -0.618 4.618 11 H 0.035 0.965 12 C -0.006 4.006 13 N -0.914 5.914 14 Si 1.108 2.892 15 H -0.284 1.284 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.057 3.943 19 F -0.142 7.142 20 C 0.062 3.938 21 F -0.132 7.132 22 H 0.099 0.901 23 H 0.134 0.866 24 H 0.102 0.898 25 H 0.181 0.819 26 H 0.158 0.842 27 H 0.338 0.662 28 H 0.324 0.676 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.732 -15.650 1.995 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.122 5.878 3 C -0.229 4.229 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.106 4.106 7 C 0.137 3.863 8 H 0.025 0.975 9 N -0.361 5.361 10 C -0.656 4.656 11 H 0.054 0.946 12 C -0.211 4.211 13 N -0.549 5.549 14 Si 0.931 3.069 15 H -0.209 1.209 16 H -0.208 1.208 17 H -0.194 1.194 18 C 0.035 3.965 19 F -0.121 7.121 20 C 0.036 3.964 21 F -0.111 7.111 22 H 0.118 0.882 23 H 0.153 0.847 24 H 0.121 0.879 25 H 0.198 0.802 26 H 0.175 0.825 27 H 0.154 0.846 28 H 0.136 0.864 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.199 -14.754 0.960 17.413 hybrid contribution -0.463 -1.062 1.194 1.664 sum -9.662 -15.816 2.154 18.658 Atomic orbital electron populations 1.23933 0.90140 1.09293 1.07338 1.85734 1.11170 0.98700 1.92207 1.21745 0.92890 1.00697 1.07519 1.21442 0.99556 0.91082 0.99715 1.21076 0.94540 0.96710 0.98209 1.21418 0.93370 0.98406 0.97428 1.17902 0.90512 0.82558 0.95371 0.97527 1.59079 1.08894 1.63011 1.05127 1.21864 1.55030 0.97515 0.91228 0.94625 1.26943 0.92482 0.93448 1.08206 1.70673 1.44158 1.38018 1.02055 0.83055 0.77346 0.75694 0.70776 1.20900 1.20821 1.19374 1.17725 0.79522 0.91275 1.08006 1.91452 1.35114 1.91408 1.94129 1.17178 0.85416 0.84139 1.09647 1.91467 1.60453 1.64938 1.94229 0.88191 0.84741 0.87905 0.80156 0.82485 0.84642 0.86356 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.15 113.37 1.04 -0.48 15 2 S -0.12 -2.71 22.17 -56.49 -1.25 -3.96 15 3 C -0.12 -3.39 6.11 22.64 0.14 -3.25 15 4 C -0.09 -2.36 9.36 22.41 0.21 -2.15 15 5 C -0.09 -2.65 9.26 22.25 0.21 -2.44 15 6 C -0.10 -4.14 4.99 -19.79 -0.10 -4.24 15 7 C 0.25 12.13 2.24 43.42 0.10 12.23 15 8 H 0.01 0.39 7.65 -2.39 -0.02 0.38 15 9 N -0.83 -35.48 7.38 -174.96 -1.29 -36.77 15 10 C -0.62 -34.46 8.71 25.60 0.22 -34.24 15 11 H 0.04 2.02 7.74 -2.91 -0.02 2.00 15 12 C -0.01 -0.37 5.39 84.65 0.46 0.09 15 13 N -0.91 -55.38 13.51 21.45 0.29 -55.09 15 14 Si 1.11 50.66 29.90 68.60 2.05 52.71 15 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 18 C 0.06 2.43 7.24 22.39 0.16 2.59 15 19 F -0.14 -6.87 16.47 44.97 0.74 -6.13 15 20 C 0.06 2.33 7.28 22.52 0.16 2.49 15 21 F -0.13 -5.04 16.67 44.97 0.75 -4.29 15 22 H 0.10 0.92 7.75 -2.39 -0.02 0.90 15 23 H 0.13 0.89 8.14 -2.39 -0.02 0.87 15 24 H 0.10 0.86 7.75 -2.39 -0.02 0.85 15 25 H 0.18 2.77 5.88 -2.91 -0.02 2.75 15 26 H 0.16 4.17 6.27 -2.91 -0.02 4.15 15 27 H 0.34 13.09 7.20 -89.70 -0.65 12.44 15 28 H 0.32 11.82 9.06 -89.69 -0.81 11.00 15 29 H 0.28 17.02 6.39 -92.70 -0.59 16.42 15 Total: -1.00 -69.57 270.99 3.82 -65.75 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -0.06 Total: 17.17 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 2.60 Total: -29.41 kcal Atomic # 7 Polarization: -90.85 SS G_CDS: -1.00 Total: -91.85 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 1.49 Total: -10.41 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.05 Total: 52.71 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -1.25 Total: -3.96 kcal Total: -69.57 3.82 -65.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260947691.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.238 kcal (2) G-P(sol) polarization free energy of solvation -69.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds