Wall clock time and date at job start Mon Mar 30 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28731 * 121.08485 * 2 1 4 4 S 1.69390 * 108.98051 * 180.02562 * 3 2 1 5 5 C 1.76507 * 96.12237 * 0.02562 * 4 3 2 6 6 C 1.38788 * 133.55537 * 180.02562 * 5 4 3 7 7 C 1.36714 * 119.75555 * 179.97438 * 6 5 4 8 8 C 1.38974 * 120.15561 * 0.03266 * 7 6 5 9 9 C 1.50694 * 119.42390 * 179.97438 * 8 7 6 10 10 C 1.50708 * 115.54856 * 117.59785 * 9 8 7 11 11 H 1.07995 * 120.00058 * 115.47063 * 10 9 8 12 12 C 1.37873 * 119.99713 * 295.46029 * 10 9 8 13 13 N 1.31520 * 119.99792 * 173.00992 * 12 10 9 14 14 Si 1.86797 * 120.00436 * 353.29505 * 12 10 9 15 15 H 1.48497 * 109.47405 * 84.79950 * 14 12 10 16 16 H 1.48501 * 109.46948 * 204.80124 * 14 12 10 17 17 H 1.48497 * 109.46873 * 324.79900 * 14 12 10 18 18 C 1.52995 * 117.50206 * 263.26888 * 9 8 7 19 19 C 1.52996 * 117.50067 * 331.93126 * 9 8 7 20 20 C 1.36040 * 121.15571 * 0.24198 * 8 7 6 21 21 C 1.40799 * 105.52221 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47414 * 95.13010 * 1 2 3 23 23 H 1.09003 * 109.47311 * 215.12395 * 1 2 3 24 24 H 1.09001 * 109.47563 * 335.12829 * 1 2 3 25 25 H 1.08001 * 120.12282 * 359.96259 * 6 5 4 26 26 H 1.08002 * 119.92363 * 179.97438 * 7 6 5 27 27 H 0.96995 * 120.00159 * 180.02562 * 13 12 10 28 28 H 1.09001 * 117.50022 * 215.00091 * 18 9 8 29 29 H 1.09005 * 117.49713 * 0.02562 * 18 9 8 30 30 H 1.09006 * 117.49499 * 359.97182 * 19 9 8 31 31 H 1.08996 * 117.50260 * 144.99307 * 19 9 8 32 32 H 1.07999 * 119.89660 * 179.72633 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7473 -0.0007 5 6 3.6439 -1.0082 -0.0018 6 6 4.5446 -2.0641 -0.0024 7 6 4.0819 -3.3506 -0.0027 8 6 2.7149 -3.6009 -0.0032 9 6 2.2230 -5.0253 -0.0042 10 6 1.4151 -5.4347 1.2004 11 1 0.3760 -5.7061 1.0868 12 6 2.0028 -5.4630 2.4473 13 7 1.2684 -5.6857 3.5154 14 14 3.8406 -5.1773 2.6206 15 1 4.1115 -3.7183 2.6782 16 1 4.3261 -5.8206 3.8678 17 1 4.5452 -5.7658 1.4534 18 6 1.8424 -5.6404 -1.3523 19 6 3.1245 -6.0835 -0.6431 20 6 1.8129 -2.5824 -0.0083 21 6 2.2554 -1.2416 -0.0022 22 1 -0.3634 -0.0919 -1.0235 23 1 -0.3634 -0.8405 0.5913 24 1 -0.3634 0.9323 0.4322 25 1 5.6071 -1.8703 -0.0027 26 1 4.7804 -4.1744 -0.0035 27 1 1.6817 -5.7053 4.3927 28 1 1.0078 -6.3412 -1.3681 29 1 1.9482 -5.0148 -2.2387 30 1 4.0732 -5.7493 -1.0632 31 1 3.1333 -7.0758 -0.1923 32 1 0.7551 -2.8002 -0.0131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260954354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:22 Heat of formation + Delta-G solvation = 71.488938 kcal Electronic energy + Delta-G solvation = -16793.891808 eV Core-core repulsion = 14232.286906 eV Total energy + Delta-G solvation = -2561.604902 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82226 -37.59139 -35.51931 -32.25251 -30.82432 -29.94499 -29.15390 -25.95369 -23.36969 -22.76516 -21.43832 -20.30210 -19.06374 -17.88822 -16.71324 -15.81454 -15.07828 -14.92552 -14.63974 -14.47551 -13.63170 -13.51499 -13.05821 -12.88789 -12.69300 -12.31615 -11.89722 -11.68168 -11.39082 -11.11838 -10.89899 -10.68236 -10.54458 -10.38455 -10.15450 -9.84665 -9.51525 -9.09130 -8.93253 -8.55644 -8.37741 -7.44056 -6.23374 -4.26211 0.80274 1.62317 1.69558 2.05935 2.39268 3.25761 3.32966 3.34460 4.00793 4.34535 4.51328 4.71521 4.88187 5.15916 5.27688 5.37845 5.47672 5.57786 5.62095 5.75680 5.80149 5.99081 6.04081 6.10102 6.25785 6.33628 6.38385 6.44070 6.63199 6.75689 6.90310 7.01587 7.16892 7.28539 7.58418 8.35019 8.78378 9.39459 10.87161 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.007754 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.043166 B = 3609.993561 C = 3705.746848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.165 3.835 3 N -0.453 5.453 4 S 0.142 5.858 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.087 4.087 8 C -0.024 4.024 9 C 0.026 3.974 10 C -0.486 4.486 11 H 0.081 0.919 12 C 0.086 3.914 13 N -0.889 5.889 14 Si 0.860 3.140 15 H -0.269 1.269 16 H -0.293 1.293 17 H -0.251 1.251 18 C -0.171 4.171 19 C -0.193 4.193 20 C -0.029 4.029 21 C -0.136 4.136 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.267 0.733 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 7.052 -7.911 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 N -0.266 5.266 4 S 0.295 5.705 5 C -0.260 4.260 6 C -0.113 4.113 7 C -0.109 4.109 8 C -0.026 4.026 9 C 0.025 3.975 10 C -0.523 4.523 11 H 0.099 0.901 12 C -0.118 4.118 13 N -0.525 5.525 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.219 1.219 17 H -0.175 1.175 18 C -0.208 4.208 19 C -0.230 4.230 20 C -0.051 4.051 21 C -0.146 4.146 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.098 0.902 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.150 9.264 -7.691 12.736 hybrid contribution 0.405 -1.470 0.413 1.580 sum 4.555 7.794 -7.278 11.596 Atomic orbital electron populations 1.20685 0.86321 1.04381 1.03853 1.22600 0.98406 0.87228 0.94210 1.75730 1.01180 1.26317 1.23333 1.84498 1.08664 0.97610 1.79709 1.23209 0.96820 0.98518 1.07450 1.19829 0.98201 0.90669 1.02647 1.21152 0.96289 0.96076 0.97339 1.19409 0.91866 0.96395 0.94924 1.18216 0.99320 0.85873 0.94101 1.20226 0.97874 1.45860 0.88317 0.90061 1.24910 0.97912 0.93521 0.95492 1.69884 1.35886 1.48281 0.98470 0.87114 0.86694 0.79439 0.78023 1.19404 1.21925 1.17505 1.22823 0.99067 1.03847 0.95031 1.23138 0.93027 1.01261 1.05621 1.20457 1.00822 0.88032 0.95806 1.20194 0.91337 0.94778 1.08323 0.89544 0.89146 0.90223 0.85589 0.85064 0.92337 0.89266 0.90750 0.91016 0.89177 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.11 36.00 0.36 -0.76 16 2 C 0.17 2.71 6.88 -81.23 -0.56 2.15 16 3 N -0.45 -7.78 11.84 34.00 0.40 -7.37 16 4 S 0.14 2.33 23.86 -107.50 -2.56 -0.23 16 5 C -0.14 -2.52 6.71 -38.41 -0.26 -2.78 16 6 C -0.09 -1.56 10.02 -39.93 -0.40 -1.96 16 7 C -0.09 -1.61 6.73 -39.86 -0.27 -1.88 16 8 C -0.02 -0.47 4.04 -105.14 -0.43 -0.90 16 9 C 0.03 0.55 1.02 -156.82 -0.16 0.39 16 10 C -0.49 -12.57 9.24 -34.44 -0.32 -12.88 16 11 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 12 C 0.09 2.33 5.46 -17.82 -0.10 2.24 16 13 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 14 Si 0.86 20.49 24.07 -169.99 -4.09 16.39 16 15 H -0.27 -6.46 6.83 56.52 0.39 -6.07 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.25 -5.46 5.46 56.52 0.31 -5.15 16 18 C -0.17 -3.14 9.94 -26.70 -0.27 -3.41 16 19 C -0.19 -3.72 7.66 -26.70 -0.20 -3.93 16 20 C -0.03 -0.55 9.24 -39.25 -0.36 -0.91 16 21 C -0.14 -2.46 6.05 -105.14 -0.64 -3.10 16 22 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.09 1.09 7.81 -51.93 -0.41 0.68 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 26 H 0.13 2.30 5.71 -52.49 -0.30 2.00 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.07 1.25 6.92 -51.93 -0.36 0.89 16 31 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 32 H 0.14 2.46 7.83 -52.49 -0.41 2.05 16 LS Contribution 279.64 15.07 4.21 4.21 Total: -1.00 -29.04 279.64 -8.54 -37.57 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -3.68 Total: 2.27 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -3.59 Total: -27.73 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 1.18 Total: -32.49 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.09 Total: 16.39 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.56 Total: -0.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.04 -8.54 -37.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260954354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.062 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds