Wall clock time and date at job start Mon Mar 30 2020 07:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.28731 * 121.08485 * 2 1 4 4 S 1.69390 * 108.98051 * 180.02562 * 3 2 1 5 5 C 1.76507 * 96.12237 * 0.02562 * 4 3 2 6 6 C 1.38788 * 133.55537 * 180.02562 * 5 4 3 7 7 C 1.36714 * 119.75555 * 179.97438 * 6 5 4 8 8 C 1.38974 * 120.15561 * 0.03266 * 7 6 5 9 9 C 1.50694 * 119.42390 * 179.97438 * 8 7 6 10 10 C 1.50708 * 115.54856 * 117.59785 * 9 8 7 11 11 H 1.07995 * 120.00058 * 115.47063 * 10 9 8 12 12 C 1.37873 * 119.99713 * 295.46029 * 10 9 8 13 13 N 1.31520 * 119.99792 * 173.00992 * 12 10 9 14 14 Si 1.86797 * 120.00436 * 353.29505 * 12 10 9 15 15 H 1.48497 * 109.47405 * 84.79950 * 14 12 10 16 16 H 1.48501 * 109.46948 * 204.80124 * 14 12 10 17 17 H 1.48497 * 109.46873 * 324.79900 * 14 12 10 18 18 C 1.52995 * 117.50206 * 263.26888 * 9 8 7 19 19 C 1.52996 * 117.50067 * 331.93126 * 9 8 7 20 20 C 1.36040 * 121.15571 * 0.24198 * 8 7 6 21 21 C 1.40799 * 105.52221 * 0.02562 * 5 4 3 22 22 H 1.09001 * 109.47414 * 95.13010 * 1 2 3 23 23 H 1.09003 * 109.47311 * 215.12395 * 1 2 3 24 24 H 1.09001 * 109.47563 * 335.12829 * 1 2 3 25 25 H 1.08001 * 120.12282 * 359.96259 * 6 5 4 26 26 H 1.08002 * 119.92363 * 179.97438 * 7 6 5 27 27 H 0.96995 * 120.00159 * 180.02562 * 13 12 10 28 28 H 1.09001 * 117.50022 * 215.00091 * 18 9 8 29 29 H 1.09005 * 117.49713 * 0.02562 * 18 9 8 30 30 H 1.09006 * 117.49499 * 359.97182 * 19 9 8 31 31 H 1.08996 * 117.50260 * 144.99307 * 19 9 8 32 32 H 1.07999 * 119.89660 * 179.72633 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1716 1.1025 0.0000 4 16 3.8279 0.7473 -0.0007 5 6 3.6439 -1.0082 -0.0018 6 6 4.5446 -2.0641 -0.0024 7 6 4.0819 -3.3506 -0.0027 8 6 2.7149 -3.6009 -0.0032 9 6 2.2230 -5.0253 -0.0042 10 6 1.4151 -5.4347 1.2004 11 1 0.3760 -5.7061 1.0868 12 6 2.0028 -5.4630 2.4473 13 7 1.2684 -5.6857 3.5154 14 14 3.8406 -5.1773 2.6206 15 1 4.1115 -3.7183 2.6782 16 1 4.3261 -5.8206 3.8678 17 1 4.5452 -5.7658 1.4534 18 6 1.8424 -5.6404 -1.3523 19 6 3.1245 -6.0835 -0.6431 20 6 1.8129 -2.5824 -0.0083 21 6 2.2554 -1.2416 -0.0022 22 1 -0.3634 -0.0919 -1.0235 23 1 -0.3634 -0.8405 0.5913 24 1 -0.3634 0.9323 0.4322 25 1 5.6071 -1.8703 -0.0027 26 1 4.7804 -4.1744 -0.0035 27 1 1.6817 -5.7053 4.3927 28 1 1.0078 -6.3412 -1.3681 29 1 1.9482 -5.0148 -2.2387 30 1 4.0732 -5.7493 -1.0632 31 1 3.1333 -7.0758 -0.1923 32 1 0.7551 -2.8002 -0.0131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260954354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:22 Heat of formation + Delta-G solvation = 55.510375 kcal Electronic energy + Delta-G solvation = -16794.584690 eV Core-core repulsion = 14232.286906 eV Total energy + Delta-G solvation = -2562.297784 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.20185 -39.02660 -36.94832 -34.27536 -32.18198 -31.31000 -30.27872 -27.89537 -24.74735 -24.22983 -22.91558 -21.69526 -20.57178 -19.35768 -18.44885 -17.23001 -16.68785 -16.43053 -16.11029 -15.82153 -14.93800 -14.87043 -14.80511 -14.53023 -13.92827 -13.63052 -13.13030 -13.12162 -12.95100 -12.76546 -12.53642 -12.16137 -12.02438 -11.85833 -11.68420 -11.45450 -11.11918 -10.84685 -10.53890 -10.32060 -9.80228 -8.77272 -8.30322 -6.35290 -0.54887 0.22176 0.38369 0.77912 1.08038 1.38211 1.38649 1.48752 2.37663 2.60459 2.96445 3.21232 3.40521 3.60623 3.85350 4.15575 4.19770 4.34727 4.39987 4.45004 4.50798 4.61329 4.67998 4.80322 4.93236 4.96112 5.01716 5.15167 5.16099 5.34656 5.51074 5.55206 5.68169 5.75512 5.83911 6.30539 6.71528 7.33317 8.83575 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022412 B = 0.007754 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.043166 B = 3609.993561 C = 3705.746848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.163 3.837 3 N -0.470 5.470 4 S 0.163 5.837 5 C -0.155 4.155 6 C -0.086 4.086 7 C -0.095 4.095 8 C -0.039 4.039 9 C 0.001 3.999 10 C -0.478 4.478 11 H 0.041 0.959 12 C 0.031 3.969 13 N -0.943 5.943 14 Si 0.913 3.087 15 H -0.269 1.269 16 H -0.305 1.305 17 H -0.215 1.215 18 C -0.155 4.155 19 C -0.184 4.184 20 C -0.039 4.039 21 C -0.147 4.147 22 H 0.109 0.891 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.159 0.841 26 H 0.146 0.854 27 H 0.264 0.736 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.154 8.029 -9.611 13.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 N -0.282 5.282 4 S 0.316 5.684 5 C -0.275 4.275 6 C -0.108 4.108 7 C -0.117 4.117 8 C -0.042 4.042 9 C 0.000 4.000 10 C -0.515 4.515 11 H 0.059 0.941 12 C -0.168 4.168 13 N -0.582 5.582 14 Si 0.738 3.262 15 H -0.195 1.195 16 H -0.232 1.232 17 H -0.137 1.137 18 C -0.192 4.192 19 C -0.221 4.221 20 C -0.062 4.062 21 C -0.158 4.158 22 H 0.127 0.873 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.177 0.823 26 H 0.164 0.836 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.024 10.245 -9.432 15.173 hybrid contribution -0.285 -1.717 0.877 1.949 sum 5.739 8.528 -8.555 13.373 Atomic orbital electron populations 1.20826 0.83916 1.05041 1.05389 1.23000 1.00009 0.86388 0.93223 1.75725 1.01709 1.26670 1.24127 1.84379 1.08346 0.96224 1.79403 1.23569 0.97049 0.99737 1.07125 1.20196 0.99804 0.89856 1.00976 1.21309 0.95664 0.97186 0.97555 1.19302 0.92948 0.95370 0.96555 1.18032 1.00951 0.87369 0.93609 1.20397 0.96658 1.44268 0.90224 0.94110 1.25675 1.02087 0.93814 0.95227 1.70034 1.37763 1.51415 0.98989 0.86287 0.82091 0.79190 0.78622 1.19490 1.23226 1.13693 1.22881 0.98613 1.03185 0.94510 1.23171 0.94444 0.99801 1.04662 1.20503 1.00818 0.88569 0.96267 1.20399 0.92012 0.94969 1.08406 0.87307 0.89184 0.88949 0.82310 0.83647 0.92721 0.89723 0.88178 0.88152 0.90099 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.08 10.11 71.24 0.72 -1.36 16 2 C 0.16 5.08 6.88 44.74 0.31 5.38 16 3 N -0.47 -15.21 11.84 -46.34 -0.55 -15.76 16 4 S 0.16 4.97 23.86 -56.49 -1.35 3.63 16 5 C -0.16 -5.19 6.71 23.03 0.15 -5.03 16 6 C -0.09 -2.65 10.02 22.04 0.22 -2.43 16 7 C -0.10 -3.22 6.73 22.09 0.15 -3.07 16 8 C -0.04 -1.51 4.04 -20.20 -0.08 -1.59 16 9 C 0.00 0.05 1.02 -53.68 -0.05 0.00 16 10 C -0.48 -25.19 9.24 25.60 0.24 -24.95 16 11 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 12 C 0.03 1.69 5.46 84.65 0.46 2.15 16 13 N -0.94 -56.97 13.96 21.45 0.30 -56.67 16 14 Si 0.91 41.83 24.07 68.60 1.65 43.48 16 15 H -0.27 -12.30 6.83 99.48 0.68 -11.62 16 16 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 17 H -0.21 -8.43 5.46 99.48 0.54 -7.89 16 18 C -0.15 -5.38 9.94 30.62 0.30 -5.08 16 19 C -0.18 -6.54 7.66 30.62 0.23 -6.30 16 20 C -0.04 -1.46 9.24 22.49 0.21 -1.25 16 21 C -0.15 -5.10 6.05 -20.20 -0.12 -5.22 16 22 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.09 2.09 7.81 -2.39 -0.02 2.07 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 26 H 0.15 4.42 5.71 -2.91 -0.02 4.41 16 27 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 30 H 0.10 3.02 6.92 -2.38 -0.02 3.00 16 31 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.13 4.86 7.83 -2.91 -0.02 4.84 16 Total: -1.00 -63.35 279.64 3.73 -59.62 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.94 Total: 14.46 kcal Atomic # 6 Polarization: -51.50 SS G_CDS: 2.74 Total: -48.76 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -0.25 Total: -72.43 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.65 Total: 43.48 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -1.35 Total: 3.63 kcal Total: -63.35 3.73 -59.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260954354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.130 kcal (2) G-P(sol) polarization free energy of solvation -63.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds