Wall clock time and date at job start Mon Mar 30 2020 07:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28732 * 121.09045 * 2 1 4 4 S 1.69385 * 108.98670 * 179.97438 * 3 2 1 5 5 C 1.76506 * 96.12140 * 359.97438 * 4 3 2 6 6 C 1.38787 * 133.54961 * 180.02562 * 5 4 3 7 7 C 1.36714 * 119.75422 * 179.97438 * 6 5 4 8 8 C 1.38978 * 120.15046 * 0.25641 * 7 6 5 9 9 C 1.36041 * 121.15948 * 359.47615 * 8 7 6 10 10 C 1.50702 * 119.89494 * 180.26610 * 9 8 7 11 11 C 1.50699 * 115.54626 * 268.13129 * 10 9 8 12 12 H 1.08007 * 119.99736 * 155.40573 * 11 10 9 13 13 C 1.37870 * 120.00317 * 335.40607 * 11 10 9 14 14 N 1.31515 * 120.00087 * 8.99250 * 13 11 10 15 15 Si 1.86804 * 120.00128 * 188.99886 * 13 11 10 16 16 H 1.48490 * 109.47404 * 89.99820 * 15 13 11 17 17 H 1.48501 * 109.46820 * 209.99814 * 15 13 11 18 18 H 1.48498 * 109.47079 * 329.99419 * 15 13 11 19 19 C 1.52999 * 117.50043 * 122.42128 * 10 9 8 20 20 C 1.53002 * 117.50042 * 53.79728 * 10 9 8 21 21 C 1.40810 * 105.52088 * 0.02562 * 5 4 3 22 22 H 1.08996 * 109.47261 * 264.25879 * 1 2 3 23 23 H 1.09006 * 109.46905 * 24.25709 * 1 2 3 24 24 H 1.09000 * 109.47716 * 144.25375 * 1 2 3 25 25 H 1.07993 * 120.12358 * 359.97438 * 6 5 4 26 26 H 1.08000 * 119.92626 * 179.97438 * 7 6 5 27 27 H 1.08002 * 119.42156 * 179.72418 * 8 7 6 28 28 H 0.96999 * 120.00141 * 174.97336 * 14 13 11 29 29 H 1.08999 * 117.49840 * 0.02562 * 19 10 9 30 30 H 1.08994 * 117.49824 * 145.01674 * 19 10 9 31 31 H 1.08994 * 117.49963 * 214.98443 * 20 10 9 32 32 H 1.09000 * 117.49707 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1717 1.1024 0.0000 4 16 3.8279 0.7472 0.0007 5 6 3.6440 -1.0082 0.0018 6 6 4.5447 -2.0641 0.0033 7 6 4.0821 -3.3506 0.0044 8 6 2.7151 -3.6008 -0.0013 9 6 1.8130 -2.5825 0.0026 10 6 0.3370 -2.8865 0.0024 11 6 -0.3092 -2.9695 -1.3565 12 1 -1.2112 -3.5481 -1.4911 13 6 0.2511 -2.3070 -2.4280 14 7 1.4371 -1.7511 -2.3102 15 14 -0.6745 -2.1988 -4.0470 16 1 -1.5203 -0.9783 -4.0530 17 1 0.2963 -2.1338 -5.1688 18 1 -1.5353 -3.3984 -4.2062 19 6 -0.5012 -2.3203 1.1503 20 6 -0.1927 -3.8178 1.0946 21 6 2.2553 -1.2416 0.0010 22 1 -0.3633 -0.1028 1.0225 23 1 -0.3633 0.9370 -0.4222 24 1 -0.3634 -0.8340 -0.6003 25 1 5.6071 -1.8701 0.0035 26 1 4.7806 -4.1743 0.0050 27 1 2.3626 -4.6217 -0.0049 28 1 1.8630 -1.3487 -3.0832 29 1 0.0149 -1.7275 1.9055 30 1 -1.5202 -2.0075 0.9228 31 1 -1.0087 -4.4903 0.8304 32 1 0.5264 -4.2103 1.8136 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260955561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:25 Heat of formation + Delta-G solvation = 82.931711 kcal Electronic energy + Delta-G solvation = -17658.015850 eV Core-core repulsion = 15096.907144 eV Total energy + Delta-G solvation = -2561.108706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.45898 -36.37708 -35.79571 -32.44720 -29.76689 -29.42796 -28.54803 -25.87008 -22.68656 -22.18876 -21.45493 -19.64209 -19.00524 -17.55540 -16.29460 -15.00574 -14.87311 -14.46326 -14.26518 -14.03703 -13.65871 -13.33484 -12.51412 -12.18232 -11.90272 -11.60439 -11.28569 -11.23754 -10.98466 -10.91151 -10.77665 -10.50470 -10.43002 -10.23196 -9.65920 -9.42002 -9.21462 -9.00412 -8.58404 -8.49504 -7.96042 -6.89376 -6.00324 -4.33514 1.54356 2.27219 2.37593 2.75415 3.15361 3.16467 3.26442 3.26905 4.20134 4.62126 4.75225 5.30816 5.43125 5.47038 5.69850 5.90995 6.03550 6.12351 6.21006 6.25503 6.34511 6.48558 6.51799 6.59345 6.63015 6.72778 6.97071 7.05670 7.09530 7.18945 7.21121 7.49319 7.61245 7.76031 7.84933 8.06748 8.63602 9.24260 10.71034 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.010921 C = 0.009853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.153559 B = 2563.169530 C = 2841.005478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.209 3.791 3 N -0.477 5.477 4 S 0.092 5.908 5 C -0.132 4.132 6 C -0.117 4.117 7 C -0.086 4.086 8 C -0.147 4.147 9 C 0.124 3.876 10 C 0.063 3.937 11 C -0.490 4.490 12 H 0.070 0.930 13 C 0.073 3.927 14 N -0.858 5.858 15 Si 0.894 3.106 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.206 4.206 20 C -0.206 4.206 21 C -0.044 4.044 22 H 0.077 0.923 23 H 0.054 0.946 24 H 0.135 0.865 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.267 0.733 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -1.432 4.338 4.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.021 3.979 3 N -0.289 5.289 4 S 0.244 5.756 5 C -0.252 4.252 6 C -0.140 4.140 7 C -0.108 4.108 8 C -0.167 4.167 9 C 0.119 3.881 10 C 0.063 3.937 11 C -0.526 4.526 12 H 0.089 0.911 13 C -0.132 4.132 14 N -0.493 5.493 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.197 1.197 19 C -0.244 4.244 20 C -0.243 4.243 21 C -0.055 4.055 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.153 0.847 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.872 0.969 4.205 5.183 hybrid contribution -1.003 -1.469 -1.167 2.128 sum 1.869 -0.500 3.037 3.601 Atomic orbital electron populations 1.21440 0.86990 1.05230 1.03593 1.22511 0.98234 0.87193 0.89962 1.75809 0.99996 1.26520 1.26603 1.84165 1.10690 0.98968 1.81806 1.23020 0.97052 0.97566 1.07522 1.19505 0.97220 0.90991 1.06296 1.20674 0.95565 0.95432 0.99097 1.20246 0.92272 0.98814 1.05399 1.18520 0.94142 0.89272 0.86179 1.18011 0.87795 0.97639 0.90278 1.20496 1.10845 1.30822 0.90483 0.91143 1.25091 0.94869 0.94275 0.99004 1.70014 1.13026 1.36240 1.29978 0.86537 0.79775 0.78792 0.82785 1.20219 1.21081 1.19694 1.23358 1.01740 0.94993 1.04295 1.23070 1.03666 0.93109 1.04480 1.19439 0.89807 0.94009 1.02281 0.90514 0.92713 0.84699 0.87029 0.86715 0.86699 0.92173 0.91170 0.89574 0.90063 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 8.02 36.00 0.29 -2.01 16 2 C 0.21 4.71 6.17 -81.23 -0.50 4.21 16 3 N -0.48 -10.81 11.84 34.00 0.40 -10.40 16 4 S 0.09 1.91 23.86 -107.50 -2.56 -0.65 16 5 C -0.13 -2.83 6.71 -38.41 -0.26 -3.09 16 6 C -0.12 -2.22 10.02 -39.93 -0.40 -2.62 16 7 C -0.09 -1.56 10.01 -39.86 -0.40 -1.96 16 8 C -0.15 -2.98 9.36 -40.10 -0.38 -3.36 16 9 C 0.12 2.73 3.32 -104.29 -0.35 2.38 16 10 C 0.06 1.37 1.10 -156.81 -0.17 1.20 16 11 C -0.49 -11.59 8.00 -34.44 -0.28 -11.87 16 12 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 13 C 0.07 1.75 4.39 -17.82 -0.08 1.68 16 14 N -0.86 -21.58 8.41 55.43 0.47 -21.11 16 15 Si 0.89 19.49 29.55 -169.99 -5.02 14.47 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 19 C -0.21 -3.96 6.12 -26.73 -0.16 -4.12 16 20 C -0.21 -3.91 9.73 -26.73 -0.26 -4.17 16 21 C -0.04 -1.00 3.86 -105.14 -0.41 -1.41 16 22 H 0.08 1.41 6.00 -51.93 -0.31 1.10 16 23 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.14 3.00 3.27 -51.93 -0.17 2.83 16 25 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 26 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.11 2.19 8.06 -52.49 -0.42 1.76 16 28 H 0.27 6.84 8.32 -40.82 -0.34 6.50 16 29 H 0.07 1.32 7.24 -51.93 -0.38 0.94 16 30 H 0.09 1.59 8.03 -51.93 -0.42 1.17 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 271.07 15.07 4.08 4.08 Total: -1.00 -25.75 271.07 -9.34 -35.09 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -3.36 Total: 3.68 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -3.35 Total: -25.14 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.87 Total: -31.52 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.56 Total: -0.65 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.75 -9.34 -35.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.017 kcal (2) G-P(sol) polarization free energy of solvation -25.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds