Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47214 * 264.58582 * 3 2 1 5 5 H 1.48497 * 109.47088 * 24.58554 * 3 2 1 6 6 H 1.48502 * 109.47140 * 144.58786 * 3 2 1 7 7 C 1.37874 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.74942 * 7 2 1 9 9 C 1.50701 * 120.00166 * 184.74988 * 7 2 1 10 10 H 1.09000 * 109.46871 * 4.83507 * 9 7 2 11 11 C 1.50696 * 109.47225 * 124.83167 * 9 7 2 12 12 C 1.38791 * 119.96604 * 59.72794 * 11 9 7 13 13 C 1.36183 * 120.77820 * 179.73980 * 12 11 9 14 14 C 1.40973 * 120.42414 * 0.55551 * 13 12 11 15 15 N 1.34664 * 129.68769 * 179.72751 * 14 13 12 16 16 C 1.27935 * 117.84059 * 179.97438 * 15 14 13 17 17 S 1.70641 * 111.52655 * 0.02562 * 16 15 14 18 18 C 1.39918 * 118.50458 * 359.70315 * 14 13 12 19 19 C 1.37659 * 119.96720 * 239.99950 * 11 9 7 20 20 C 1.52998 * 109.47424 * 244.83393 * 9 7 2 21 21 C 1.53002 * 117.49688 * 55.22218 * 20 9 7 22 22 C 1.53002 * 60.03092 * 107.50339 * 21 20 9 23 23 H 0.97000 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.61262 * 0.02562 * 12 11 9 25 25 H 1.08000 * 119.79173 * 180.23829 * 13 12 11 26 26 H 1.08008 * 124.23005 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.02227 * 0.02562 * 19 11 9 28 28 H 1.08998 * 115.55784 * 269.53954 * 20 9 7 29 29 H 1.08995 * 117.50279 * 0.02562 * 21 20 9 30 30 H 1.09006 * 117.49578 * 215.00494 * 21 20 9 31 31 H 1.08999 * 117.49685 * 107.47464 * 22 21 20 32 32 H 1.08992 * 117.50209 * 252.47573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6111 1.9804 -1.3939 5 1 1.3940 2.6830 0.5825 6 1 3.4848 1.4759 0.8113 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0784 9 6 3.5077 -1.1963 0.1075 10 1 3.8623 -0.1774 0.2628 11 6 3.9263 -2.0567 1.2718 12 6 3.5809 -3.4006 1.3001 13 6 3.9551 -4.1945 2.3414 14 6 4.6922 -3.6600 3.4177 15 7 5.1496 -4.2641 4.5309 16 6 5.8027 -3.5537 5.3708 17 16 5.9400 -1.9350 4.8487 18 6 5.0325 -2.3032 3.3854 19 6 4.6460 -1.5076 2.3088 20 6 4.1110 -1.7553 -1.1826 21 6 3.7110 -1.0843 -2.4981 22 6 5.1169 -0.8774 -1.9312 23 1 -0.4850 0.8401 0.0004 24 1 3.0128 -3.8229 0.4845 25 1 3.6810 -5.2391 2.3453 26 1 6.2154 -3.9314 6.2947 27 1 4.9102 -0.4606 2.2883 28 1 4.2750 -2.8328 -1.1967 29 1 3.0184 -0.2444 -2.4445 30 1 3.6115 -1.7204 -3.3777 31 1 5.9424 -1.3777 -2.4375 32 1 5.3492 0.0985 -1.5049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963278.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = 75.935803 kcal Electronic energy + Delta-G solvation = -16510.580104 eV Core-core repulsion = 13949.168033 eV Total energy + Delta-G solvation = -2561.412071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.01144 -37.71114 -35.91327 -32.79351 -30.99601 -30.50773 -27.50230 -24.65705 -23.27188 -22.32753 -21.58449 -20.88818 -19.24757 -17.97053 -17.12849 -15.95298 -15.51626 -15.03887 -14.58155 -14.37692 -13.76722 -13.62222 -13.39902 -13.06542 -12.55165 -12.13705 -11.95162 -11.52951 -11.22003 -10.96487 -10.68682 -10.55332 -10.46842 -9.85423 -9.79110 -9.72190 -9.48455 -9.35324 -8.90227 -8.62642 -8.08872 -7.61980 -6.22483 -4.21255 0.81992 1.54942 1.65310 1.99661 2.76738 3.16716 3.22916 3.26855 4.18003 4.26637 4.28256 4.62063 5.00467 5.11166 5.34101 5.40456 5.65141 5.70996 5.78080 5.81449 5.90626 6.09572 6.17351 6.32476 6.35646 6.51673 6.59782 6.69556 6.80255 6.87624 7.09441 7.23736 7.28701 7.54533 7.85681 8.34744 8.82520 9.37841 10.89915 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.006697 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.155336 B = 4179.759041 C = 4441.929085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.867 3.133 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.495 4.495 8 H 0.080 0.920 9 C 0.062 3.938 10 H 0.055 0.945 11 C 0.006 3.994 12 C -0.089 4.089 13 C -0.066 4.066 14 C 0.044 3.956 15 N -0.457 5.457 16 C 0.044 3.956 17 S 0.059 5.941 18 C -0.157 4.157 19 C -0.101 4.101 20 C -0.122 4.122 21 C -0.164 4.164 22 C -0.206 4.206 23 H 0.266 0.734 24 H 0.136 0.864 25 H 0.127 0.873 26 H 0.196 0.804 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -3.285 4.646 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.533 4.533 8 H 0.098 0.902 9 C 0.043 3.957 10 H 0.073 0.927 11 C 0.002 3.998 12 C -0.109 4.109 13 C -0.088 4.088 14 C -0.074 4.074 15 N -0.170 5.170 16 C -0.262 4.262 17 S 0.311 5.689 18 C -0.275 4.275 19 C -0.124 4.124 20 C -0.141 4.141 21 C -0.201 4.201 22 C -0.243 4.243 23 H 0.076 0.924 24 H 0.154 0.846 25 H 0.145 0.855 26 H 0.213 0.787 27 H 0.140 0.860 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.454 -2.913 5.263 12.937 hybrid contribution -0.137 0.536 -0.470 0.726 sum 11.317 -2.376 4.793 12.518 Atomic orbital electron populations 1.69874 1.06180 1.27192 1.49415 1.25046 0.94687 0.98674 0.94251 0.87041 0.80230 0.84156 0.79114 1.19581 1.21359 1.18914 1.20768 0.87538 0.94970 1.49988 0.90169 1.18184 0.96921 0.94091 0.86549 0.92736 1.20556 0.89328 0.94002 0.95886 1.20686 0.98562 0.93593 0.98106 1.20325 0.97009 1.00017 0.91404 1.19078 1.04150 0.89428 0.94731 1.66124 1.10822 1.37619 1.02399 1.27791 1.01732 0.93643 1.02992 1.83753 1.56043 1.13677 1.15466 1.23689 1.05730 0.98106 0.99957 1.20223 1.00761 0.98952 0.92457 1.22579 1.00176 0.97021 0.94310 1.22755 0.96509 1.03878 0.96961 1.23063 0.93170 1.01600 1.06485 0.92360 0.84623 0.85522 0.78737 0.85955 0.89130 0.88616 0.90060 0.90131 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 20.21 26.76 -169.99 -4.55 15.67 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -5.85 6.21 56.52 0.35 -5.50 16 7 C -0.50 -12.63 7.93 -34.44 -0.27 -12.90 16 8 H 0.08 2.22 7.86 -52.49 -0.41 1.81 16 9 C 0.06 1.32 2.08 -92.93 -0.19 1.13 16 10 H 0.05 1.21 3.94 -51.93 -0.20 1.00 16 11 C 0.01 0.13 4.77 -104.63 -0.50 -0.37 16 12 C -0.09 -1.65 8.43 -40.12 -0.34 -1.99 16 13 C -0.07 -1.16 10.05 -39.29 -0.39 -1.56 16 14 C 0.04 0.81 7.00 -84.96 -0.59 0.21 16 15 N -0.46 -7.69 10.57 -12.95 -0.14 -7.82 16 16 C 0.04 0.59 12.10 51.14 0.62 1.21 16 17 S 0.06 0.83 23.17 -107.50 -2.49 -1.66 16 18 C -0.16 -2.82 6.56 -38.54 -0.25 -3.07 16 19 C -0.10 -1.93 9.69 -39.38 -0.38 -2.31 16 20 C -0.12 -2.32 5.10 -90.58 -0.46 -2.78 16 21 C -0.16 -3.05 9.78 -26.73 -0.26 -3.31 16 22 C -0.21 -3.50 10.18 -26.69 -0.27 -3.77 16 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.14 2.38 7.78 -52.49 -0.41 1.98 16 25 H 0.13 1.92 8.06 -52.49 -0.42 1.49 16 26 H 0.20 1.75 8.06 -52.48 -0.42 1.33 16 27 H 0.12 2.23 7.94 -52.49 -0.42 1.82 16 28 H 0.09 1.60 7.41 -51.93 -0.38 1.22 16 29 H 0.10 1.99 7.38 -51.93 -0.38 1.61 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -28.76 285.06 -9.01 -37.77 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.50 Total: 4.25 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -3.40 Total: -27.56 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.64 Total: -32.76 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.55 Total: 15.67 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.76 -9.01 -37.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963278.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.708 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds