Wall clock time and date at job start Mon Mar 30 2020 07:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47214 * 264.58582 * 3 2 1 5 5 H 1.48497 * 109.47088 * 24.58554 * 3 2 1 6 6 H 1.48502 * 109.47140 * 144.58786 * 3 2 1 7 7 C 1.37874 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.74942 * 7 2 1 9 9 C 1.50701 * 120.00166 * 184.74988 * 7 2 1 10 10 H 1.09000 * 109.46871 * 4.83507 * 9 7 2 11 11 C 1.50696 * 109.47225 * 124.83167 * 9 7 2 12 12 C 1.38791 * 119.96604 * 59.72794 * 11 9 7 13 13 C 1.36183 * 120.77820 * 179.73980 * 12 11 9 14 14 C 1.40973 * 120.42414 * 0.55551 * 13 12 11 15 15 N 1.34664 * 129.68769 * 179.72751 * 14 13 12 16 16 C 1.27935 * 117.84059 * 179.97438 * 15 14 13 17 17 S 1.70641 * 111.52655 * 0.02562 * 16 15 14 18 18 C 1.39918 * 118.50458 * 359.70315 * 14 13 12 19 19 C 1.37659 * 119.96720 * 239.99950 * 11 9 7 20 20 C 1.52998 * 109.47424 * 244.83393 * 9 7 2 21 21 C 1.53002 * 117.49688 * 55.22218 * 20 9 7 22 22 C 1.53002 * 60.03092 * 107.50339 * 21 20 9 23 23 H 0.97000 * 119.99822 * 359.97438 * 1 2 3 24 24 H 1.07996 * 119.61262 * 0.02562 * 12 11 9 25 25 H 1.08000 * 119.79173 * 180.23829 * 13 12 11 26 26 H 1.08008 * 124.23005 * 180.02562 * 16 15 14 27 27 H 1.08001 * 120.02227 * 0.02562 * 19 11 9 28 28 H 1.08998 * 115.55784 * 269.53954 * 20 9 7 29 29 H 1.08995 * 117.50279 * 0.02562 * 21 20 9 30 30 H 1.09006 * 117.49578 * 215.00494 * 21 20 9 31 31 H 1.08999 * 117.49685 * 107.47464 * 22 21 20 32 32 H 1.08992 * 117.50209 * 252.47573 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6111 1.9804 -1.3939 5 1 1.3940 2.6830 0.5825 6 1 3.4848 1.4759 0.8113 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0784 9 6 3.5077 -1.1963 0.1075 10 1 3.8623 -0.1774 0.2628 11 6 3.9263 -2.0567 1.2718 12 6 3.5809 -3.4006 1.3001 13 6 3.9551 -4.1945 2.3414 14 6 4.6922 -3.6600 3.4177 15 7 5.1496 -4.2641 4.5309 16 6 5.8027 -3.5537 5.3708 17 16 5.9400 -1.9350 4.8487 18 6 5.0325 -2.3032 3.3854 19 6 4.6460 -1.5076 2.3088 20 6 4.1110 -1.7553 -1.1826 21 6 3.7110 -1.0843 -2.4981 22 6 5.1169 -0.8774 -1.9312 23 1 -0.4850 0.8401 0.0004 24 1 3.0128 -3.8229 0.4845 25 1 3.6810 -5.2391 2.3453 26 1 6.2154 -3.9314 6.2947 27 1 4.9102 -0.4606 2.2883 28 1 4.2750 -2.8328 -1.1967 29 1 3.0184 -0.2444 -2.4445 30 1 3.6115 -1.7204 -3.3777 31 1 5.9424 -1.3777 -2.4375 32 1 5.3492 0.0985 -1.5049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260963278.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:20 Heat of formation + Delta-G solvation = 60.126540 kcal Electronic energy + Delta-G solvation = -16511.265646 eV Core-core repulsion = 13949.168033 eV Total energy + Delta-G solvation = -2562.097612 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.33922 -39.16759 -37.29179 -34.70936 -32.54827 -31.92647 -29.07294 -26.13413 -24.84600 -23.71692 -22.99236 -22.26176 -20.78932 -19.32035 -18.99917 -17.30418 -16.90319 -16.43460 -16.34448 -15.68952 -15.24504 -15.05366 -14.81830 -14.46902 -14.34579 -13.72324 -13.40764 -12.98577 -12.90924 -12.53456 -12.19527 -12.10109 -11.88190 -11.76975 -11.34835 -11.07803 -10.94772 -10.74873 -10.62218 -10.37889 -9.43777 -8.94577 -8.28021 -6.29203 -0.44167 0.24675 0.34720 0.79828 1.30984 1.32270 1.39864 1.47211 2.31759 2.76445 3.04954 3.14698 3.23948 3.67535 3.92626 4.16720 4.26656 4.30356 4.38798 4.40631 4.49657 4.66543 4.78107 4.89008 4.95314 5.06607 5.17335 5.24128 5.35150 5.42221 5.50911 5.64433 5.75898 5.84146 6.33033 6.63514 6.75769 7.33373 8.88267 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022924 B = 0.006697 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.155336 B = 4179.759041 C = 4441.929085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.259 1.259 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.484 4.484 8 H 0.043 0.957 9 C 0.067 3.933 10 H 0.049 0.951 11 C -0.021 4.021 12 C -0.096 4.096 13 C -0.071 4.071 14 C 0.038 3.962 15 N -0.490 5.490 16 C 0.066 3.934 17 S 0.112 5.888 18 C -0.189 4.189 19 C -0.105 4.105 20 C -0.138 4.138 21 C -0.176 4.176 22 C -0.180 4.180 23 H 0.264 0.736 24 H 0.134 0.866 25 H 0.146 0.854 26 H 0.245 0.755 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -3.427 6.078 15.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.177 4.177 3 Si 0.744 3.256 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.522 4.522 8 H 0.061 0.939 9 C 0.048 3.952 10 H 0.067 0.933 11 C -0.025 4.025 12 C -0.116 4.116 13 C -0.092 4.092 14 C -0.080 4.080 15 N -0.203 5.203 16 C -0.239 4.239 17 S 0.364 5.636 18 C -0.308 4.308 19 C -0.128 4.128 20 C -0.157 4.157 21 C -0.213 4.213 22 C -0.217 4.217 23 H 0.073 0.927 24 H 0.152 0.848 25 H 0.163 0.837 26 H 0.261 0.739 27 H 0.144 0.856 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.575 -3.055 6.689 16.325 hybrid contribution -0.981 0.449 -0.733 1.304 sum 13.594 -2.606 5.956 15.069 Atomic orbital electron populations 1.70024 1.07995 1.27778 1.52696 1.25774 0.95238 1.02142 0.94569 0.86184 0.79581 0.79943 0.79883 1.18421 1.22009 1.16841 1.20946 0.89951 0.93251 1.48051 0.93859 1.18025 0.94086 0.94438 0.88684 0.93345 1.20402 0.91620 0.94595 0.95910 1.20677 0.98844 0.93384 0.98692 1.20510 0.96770 1.00829 0.91093 1.19372 1.03628 0.89771 0.95232 1.66217 1.13012 1.38274 1.02778 1.28731 0.98679 0.93240 1.03229 1.83610 1.54039 1.13422 1.12508 1.23973 1.06900 0.98292 1.01592 1.20271 1.00664 0.99230 0.92613 1.22465 1.02090 0.97962 0.93163 1.22764 0.97545 1.03438 0.97562 1.23138 0.92937 1.01137 1.04457 0.92672 0.84841 0.83666 0.73941 0.85567 0.88051 0.91338 0.88095 0.87017 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.96 21.45 0.30 -56.94 16 2 C 0.02 1.12 5.47 84.65 0.46 1.58 16 3 Si 0.92 42.24 26.76 68.60 1.84 44.08 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.24 -10.32 6.21 99.48 0.62 -9.70 16 7 C -0.48 -25.66 7.93 25.60 0.20 -25.46 16 8 H 0.04 2.55 7.86 -2.91 -0.02 2.53 16 9 C 0.07 2.88 2.08 -12.29 -0.03 2.86 16 10 H 0.05 2.12 3.94 -2.39 -0.01 2.11 16 11 C -0.02 -0.86 4.77 -19.87 -0.09 -0.96 16 12 C -0.10 -3.58 8.43 21.92 0.18 -3.40 16 13 C -0.07 -2.46 10.05 22.46 0.23 -2.23 16 14 C 0.04 1.34 7.00 39.79 0.28 1.62 16 15 N -0.49 -15.06 10.57 -194.76 -2.06 -17.12 16 16 C 0.07 1.49 12.10 130.81 1.58 3.07 16 17 S 0.11 2.75 23.17 -56.49 -1.31 1.44 16 18 C -0.19 -6.49 6.56 22.94 0.15 -6.34 16 19 C -0.10 -3.93 9.69 22.40 0.22 -3.72 16 20 C -0.14 -5.16 5.10 -10.77 -0.05 -5.22 16 21 C -0.18 -6.40 9.78 30.60 0.30 -6.10 16 22 C -0.18 -5.68 10.18 30.62 0.31 -5.37 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 24 H 0.13 4.89 7.78 -2.91 -0.02 4.87 16 25 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 26 H 0.24 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.13 4.47 7.94 -2.91 -0.02 4.45 16 28 H 0.10 3.53 7.41 -2.39 -0.02 3.51 16 29 H 0.07 2.87 7.38 -2.39 -0.02 2.85 16 30 H 0.10 3.20 8.14 -2.38 -0.02 3.19 16 31 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 32 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 Total: -1.00 -64.56 285.06 3.55 -61.01 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.04 Total: 17.19 kcal Atomic # 6 Polarization: -53.39 SS G_CDS: 3.74 Total: -49.65 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.76 Total: -74.07 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.84 Total: 44.08 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -64.56 3.55 -61.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963278.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.135 kcal (2) G-P(sol) polarization free energy of solvation -64.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds