Wall clock time and date at job start Mon Mar 30 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 119.99756 * 2 1 4 4 H 1.48508 * 109.47278 * 269.99947 * 3 2 1 5 5 H 1.48500 * 109.47410 * 30.00173 * 3 2 1 6 6 H 1.48508 * 109.47203 * 150.00381 * 3 2 1 7 7 C 1.37877 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00214 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00119 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.47257 * 180.02562 * 9 7 2 11 11 N 1.28669 * 124.93078 * 90.28813 * 10 9 7 12 12 C 1.32525 * 117.87759 * 180.21243 * 11 10 9 13 13 C 1.34614 * 113.15967 * 359.53629 * 12 11 10 14 14 S 1.70921 * 124.93124 * 270.00489 * 10 9 7 15 15 C 1.50994 * 125.22582 * 180.19208 * 13 12 11 16 16 F 1.39899 * 109.61827 * 103.64595 * 15 13 12 17 17 F 1.39902 * 109.61826 * 224.00925 * 15 13 12 18 18 C 1.53281 * 108.58092 * 343.91888 * 15 13 12 19 19 C 1.53140 * 108.99355 * 49.27791 * 18 15 13 20 20 C 1.52133 * 124.19681 * 179.80993 * 12 11 10 21 21 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47010 * 60.00810 * 9 7 2 23 23 H 1.09000 * 109.47589 * 300.00223 * 9 7 2 24 24 H 1.09001 * 109.55059 * 169.13521 * 18 15 13 25 25 H 1.09005 * 109.54901 * 289.33030 * 18 15 13 26 26 H 1.09005 * 109.47730 * 49.61646 * 19 18 15 27 27 H 1.09005 * 109.47797 * 169.62160 * 19 18 15 28 28 H 1.09000 * 109.59270 * 281.93975 * 20 12 11 29 29 H 1.08999 * 109.59756 * 42.39817 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6147 -0.0023 11 7 4.2641 -3.3068 -1.0577 12 6 4.6978 -4.5486 -0.8960 13 6 4.8225 -4.9017 0.3970 14 16 4.3406 -3.5384 1.3983 15 6 5.2972 -6.2475 0.8905 16 9 6.6187 -6.1444 1.3377 17 9 4.4784 -6.6786 1.9398 18 6 5.2228 -7.2470 -0.2693 19 6 5.8974 -6.6337 -1.4998 20 6 5.0327 -5.4932 -2.0406 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8745 -0.6799 -0.8911 24 1 5.7374 -8.1669 0.0084 25 1 4.1793 -7.4667 -0.4952 26 1 6.8772 -6.2454 -1.2215 27 1 6.0143 -7.3975 -2.2687 28 1 4.1125 -5.9008 -2.4592 29 1 5.5801 -4.9525 -2.8126 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261339785.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:29 Heat of formation + Delta-G solvation = -71.936605 kcal Electronic energy + Delta-G solvation = -17005.599527 eV Core-core repulsion = 13883.545697 eV Total energy + Delta-G solvation = -3122.053830 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.93552 -46.95877 -39.70933 -36.07303 -33.31071 -30.99210 -29.93665 -28.33313 -24.58494 -23.49151 -22.34897 -20.65876 -18.84706 -18.05345 -17.09760 -16.97698 -16.32513 -16.09388 -14.90155 -14.38111 -14.30901 -14.06620 -13.71162 -13.32533 -13.20464 -13.01274 -12.71022 -12.51065 -12.13181 -11.98942 -11.54440 -11.30424 -11.09082 -10.81066 -10.70894 -10.53735 -10.18343 -9.61688 -9.06276 -8.95793 -8.71105 -8.22666 -6.20696 -4.23357 1.00383 1.68755 2.18843 3.14806 3.21853 3.29322 3.29596 3.64665 4.05494 4.26257 4.29177 4.43516 4.48065 4.89495 5.08213 5.14652 5.20794 5.41055 5.48634 5.62391 5.64808 5.74646 5.97305 6.05519 6.42619 6.71128 6.81737 7.41659 8.21187 8.29708 8.79892 9.35385 10.91616 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.036354 B = 0.005772 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.016513 B = 4849.503429 C = 5072.958166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.049 3.951 10 C 0.144 3.856 11 N -0.497 5.497 12 C 0.129 3.871 13 C -0.359 4.359 14 S 0.145 5.855 15 C 0.384 3.616 16 F -0.194 7.194 17 F -0.193 7.193 18 C -0.150 4.150 19 C -0.116 4.116 20 C -0.047 4.047 21 H 0.268 0.732 22 H 0.045 0.955 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.081 -12.383 -0.847 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.094 0.906 9 C 0.008 3.992 10 C -0.133 4.133 11 N -0.210 5.210 12 C -0.007 4.007 13 C -0.481 4.481 14 S 0.407 5.593 15 C 0.345 3.655 16 F -0.175 7.175 17 F -0.174 7.174 18 C -0.189 4.189 19 C -0.154 4.154 20 C -0.087 4.087 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.767 -11.765 -0.161 16.640 hybrid contribution 0.397 0.382 -0.442 0.707 sum 12.164 -11.383 -0.603 16.670 Atomic orbital electron populations 1.69866 1.06225 1.27356 1.49330 1.24893 0.94792 0.98947 0.93993 0.86823 0.80374 0.83510 0.78986 1.19751 1.20843 1.18803 1.20697 0.86937 0.95233 1.53065 0.90567 1.18662 0.98215 0.83213 0.99100 1.27677 0.94123 1.02294 0.89169 1.66051 1.17616 1.05276 1.32093 1.20926 0.96061 0.91233 0.92506 1.26098 1.22147 1.01370 0.98457 1.83919 1.59108 1.03331 1.12991 1.18605 0.72845 0.90440 0.83582 1.93023 1.36755 1.97012 1.90731 1.93036 1.72739 1.90809 1.60789 1.22564 1.04887 0.97619 0.93812 1.21561 0.99428 0.97875 0.96554 1.20476 1.00775 0.93215 0.94226 0.92210 0.93735 0.92935 0.88792 0.88205 0.90584 0.89397 0.89180 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 15 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.26 -5.81 6.54 56.52 0.37 -5.44 15 7 C -0.52 -14.47 9.65 -34.44 -0.33 -14.81 15 8 H 0.08 2.34 7.98 -52.49 -0.42 1.93 15 9 C 0.05 1.15 4.62 -29.04 -0.13 1.02 15 10 C 0.14 3.15 6.57 -13.60 -0.09 3.06 15 11 N -0.50 -10.47 10.51 -7.32 -0.08 -10.55 15 12 C 0.13 2.26 6.78 -82.87 -0.56 1.70 15 13 C -0.36 -6.24 5.84 -35.45 -0.21 -6.45 15 14 S 0.15 2.78 23.15 -107.50 -2.49 0.29 15 15 C 0.38 5.65 2.25 -27.59 -0.06 5.59 15 16 F -0.19 -2.93 16.80 2.25 0.04 -2.89 15 17 F -0.19 -3.06 17.06 2.25 0.04 -3.02 15 18 C -0.15 -1.58 5.45 -26.51 -0.14 -1.73 15 19 C -0.12 -1.11 5.86 -26.66 -0.16 -1.27 15 20 C -0.05 -0.59 6.29 -27.17 -0.17 -0.76 15 21 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.04 1.00 7.20 -51.93 -0.37 0.62 15 23 H 0.05 1.22 7.57 -51.93 -0.39 0.83 15 24 H 0.09 0.78 8.14 -51.93 -0.42 0.36 15 25 H 0.10 1.00 8.11 -51.93 -0.42 0.58 15 26 H 0.08 0.76 7.87 -51.93 -0.41 0.36 15 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 15 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 268.11 15.07 4.04 4.04 Total: -1.00 -30.79 268.11 -7.17 -37.96 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -2.87 Total: -4.33 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.96 Total: -11.57 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.70 Total: -36.34 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.08 Total: -5.91 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.49 Total: 0.29 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.79 -7.17 -37.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261339785.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.972 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds