Wall clock time and date at job start Mon Mar 30 2020 06:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30533 * 1 3 3 Si 1.86799 * 120.00286 * 2 1 4 4 H 1.48497 * 109.47311 * 270.00111 * 3 2 1 5 5 H 1.48504 * 109.46751 * 30.00372 * 3 2 1 6 6 H 1.48494 * 109.47178 * 149.99919 * 3 2 1 7 7 C 1.40335 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99401 * 179.97438 * 7 2 1 9 9 C 1.41785 * 120.00182 * 0.02562 * 7 2 1 10 10 O 1.21845 * 120.00042 * 359.97438 * 9 7 2 11 11 C 1.47420 * 120.00157 * 179.97438 * 9 7 2 12 12 C 1.39859 * 120.22159 * 354.21540 * 11 9 7 13 13 C 1.37654 * 119.92240 * 179.76401 * 12 11 9 14 14 C 1.50699 * 119.81031 * 180.26118 * 13 12 11 15 15 F 1.39903 * 109.47037 * 180.23779 * 14 13 12 16 16 F 1.39901 * 109.46859 * 300.23627 * 14 13 12 17 17 F 1.39905 * 109.47191 * 60.23555 * 14 13 12 18 18 C 1.38793 * 120.38026 * 0.49635 * 13 12 11 19 19 C 1.37945 * 120.46191 * 359.76206 * 18 13 12 20 20 C 1.38976 * 120.06191 * 359.97438 * 19 18 13 21 21 N 1.38722 * 120.18793 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00159 * 359.97438 * 1 2 3 23 23 H 1.08000 * 120.04513 * 359.97438 * 12 11 9 24 24 H 1.08004 * 119.77163 * 179.74407 * 18 13 12 25 25 H 1.08001 * 119.96867 * 179.97438 * 19 18 13 26 26 H 0.96996 * 119.99647 * 185.48773 * 21 20 19 27 27 H 0.96994 * 120.00066 * 5.48693 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4000 5 1 1.4369 2.6526 0.7002 6 1 3.5369 1.4401 0.7000 7 6 2.0070 -1.2154 0.0005 8 1 3.0869 -1.2153 0.0001 9 6 1.2980 -2.4433 0.0005 10 8 0.0796 -2.4433 0.0005 11 6 2.0351 -3.7200 0.0005 12 6 3.4283 -3.7285 -0.1213 13 6 4.1108 -4.9240 -0.1156 14 6 5.6125 -4.9299 -0.2411 15 9 6.0773 -6.2492 -0.2163 16 9 5.9819 -4.3280 -1.4488 17 9 6.1724 -4.2180 0.8252 18 6 3.4233 -6.1241 0.0000 19 6 2.0488 -6.1344 0.1157 20 6 1.3414 -4.9382 0.1176 21 7 -0.0410 -4.9455 0.2333 22 1 -0.4850 0.8400 0.0004 23 1 3.9685 -2.7982 -0.2162 24 1 3.9683 -7.0566 -0.0008 25 1 1.5219 -7.0729 0.2048 26 1 -0.5386 -4.1166 0.1545 27 1 -0.5099 -5.7794 0.3928 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261340045.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:25 Heat of formation + Delta-G solvation = -190.696495 kcal Electronic energy + Delta-G solvation = -19027.933395 eV Core-core repulsion = 15334.516574 eV Total energy + Delta-G solvation = -3693.416821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.02814 -48.54821 -48.49113 -40.66174 -38.24571 -35.76050 -34.65334 -32.29397 -30.84617 -28.67842 -26.10478 -24.72338 -23.00534 -21.56069 -19.42698 -19.35390 -19.05618 -18.43315 -17.86582 -17.41919 -17.00704 -15.64337 -15.42870 -15.39008 -15.22324 -14.95448 -14.87151 -14.75975 -14.67349 -14.64972 -14.24474 -14.09497 -13.50481 -13.30375 -12.78955 -12.73722 -12.46968 -12.12608 -11.98015 -11.72932 -11.00800 -9.84468 -9.60235 -8.56317 -8.36798 -7.07619 0.19358 0.39942 1.36271 1.38358 1.53357 1.83692 2.14450 2.20048 2.74668 2.91418 3.19177 3.21679 3.55614 3.72532 3.97020 4.02299 4.33302 4.56358 4.76790 5.04347 5.17925 5.26074 5.29600 5.42126 5.84787 5.92701 6.56391 6.67766 6.73979 7.17611 8.20447 8.44793 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.007668 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.592280 B = 3650.704339 C = 4874.724005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.544 4.544 8 H 0.087 0.913 9 C 0.379 3.621 10 O -0.584 6.584 11 C -0.238 4.238 12 C 0.003 3.997 13 C -0.276 4.276 14 C 0.523 3.477 15 F -0.175 7.175 16 F -0.186 7.186 17 F -0.186 7.186 18 C -0.013 4.013 19 C -0.214 4.214 20 C 0.266 3.734 21 N -0.849 5.849 22 H 0.283 0.717 23 H 0.126 0.874 24 H 0.164 0.836 25 H 0.163 0.837 26 H 0.409 0.591 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 -9.312 0.177 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.189 4.189 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.575 4.575 8 H 0.105 0.895 9 C 0.281 3.719 10 O -0.478 6.478 11 C -0.244 4.244 12 C -0.016 4.016 13 C -0.280 4.280 14 C 0.469 3.531 15 F -0.156 7.156 16 F -0.168 7.168 17 F -0.168 7.168 18 C -0.032 4.032 19 C -0.236 4.236 20 C 0.152 3.848 21 N -0.396 5.396 22 H 0.093 0.907 23 H 0.144 0.856 24 H 0.181 0.819 25 H 0.180 0.820 26 H 0.252 0.748 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.842 -9.197 0.173 11.464 hybrid contribution 0.100 0.867 -0.007 0.873 sum 6.942 -8.330 0.165 10.844 Atomic orbital electron populations 1.70038 1.09507 1.29858 1.31351 1.27084 0.95505 1.05053 0.91253 0.85168 0.79161 0.75354 0.79784 1.18348 1.19094 1.17459 1.21361 0.95918 0.92513 1.47706 0.89542 1.18430 0.87983 0.87781 0.77694 1.90064 1.16469 1.87916 1.53371 1.20876 0.94487 0.95536 1.13510 1.20866 0.92964 0.97055 0.90747 1.19624 0.90578 0.96378 1.21417 1.18091 0.88573 0.73180 0.73274 1.93122 1.90414 1.35829 1.96237 1.93181 1.93144 1.83899 1.46545 1.93183 1.87442 1.78974 1.57156 1.21019 0.93812 0.96840 0.91556 1.20855 0.94081 0.96406 1.12306 1.18547 0.85430 0.93200 0.87618 1.43600 1.03995 1.15017 1.76953 0.90683 0.85594 0.81871 0.81954 0.74759 0.76856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -44.01 11.73 21.89 0.26 -43.76 15 2 C 0.03 1.63 5.50 85.40 0.47 2.10 15 3 Si 0.99 38.84 29.56 68.60 2.03 40.87 15 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 15 6 H -0.25 -9.45 7.11 99.48 0.71 -8.75 15 7 C -0.54 -29.80 8.85 23.66 0.21 -29.59 15 8 H 0.09 4.35 6.06 -2.91 -0.02 4.33 15 9 C 0.38 21.12 6.89 25.57 0.18 21.30 15 10 O -0.58 -35.06 12.20 -4.81 -0.06 -35.12 15 11 C -0.24 -10.96 5.90 -19.87 -0.12 -11.08 15 12 C 0.00 0.12 8.95 22.52 0.20 0.32 15 13 C -0.28 -9.23 5.37 -19.87 -0.11 -9.34 15 14 C 0.52 15.87 3.31 71.24 0.24 16.11 15 15 F -0.17 -4.61 15.95 44.97 0.72 -3.90 15 16 F -0.19 -5.90 17.23 44.97 0.77 -5.12 15 17 F -0.19 -5.89 17.23 44.97 0.78 -5.12 15 18 C -0.01 -0.38 9.42 22.33 0.21 -0.17 15 19 C -0.21 -6.28 9.88 22.38 0.22 -6.06 15 20 C 0.27 10.29 6.77 38.82 0.26 10.56 15 21 N -0.85 -31.17 8.93 -50.82 -0.45 -31.63 15 22 H 0.28 14.30 8.29 -92.71 -0.77 13.54 15 23 H 0.13 5.17 6.24 -2.91 -0.02 5.16 15 24 H 0.16 3.39 7.13 -2.91 -0.02 3.37 15 25 H 0.16 3.44 8.06 -2.91 -0.02 3.41 15 26 H 0.41 18.14 5.34 -94.29 -0.50 17.64 15 27 H 0.40 10.92 8.84 -92.71 -0.82 10.10 15 Total: -1.00 -64.90 254.97 5.75 -59.15 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.05 Total: 30.46 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 1.76 Total: -5.84 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -0.20 Total: -75.39 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -0.06 Total: -35.12 kcal Atomic # 9 Polarization: -16.40 SS G_CDS: 2.27 Total: -14.14 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -64.90 5.75 -59.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261340045.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.543 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds