Wall clock time and date at job start Mon Mar 30 2020 06:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30537 * 1
3 3 Si 1.86801 * 119.99995 * 2 1
4 4 H 1.48501 * 109.47183 * 269.99788 * 3 2 1
5 5 H 1.48493 * 109.47019 * 30.00011 * 3 2 1
6 6 H 1.48498 * 109.46965 * 150.00339 * 3 2 1
7 7 C 1.40332 * 119.99963 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99846 * 179.97438 * 7 2 1
9 9 C 1.41782 * 119.99759 * 0.27971 * 7 2 1
10 10 O 1.21840 * 120.00144 * 359.71822 * 9 7 2
11 11 C 1.47425 * 119.99990 * 179.72739 * 9 7 2
12 12 C 1.39870 * 120.22294 * 5.79356 * 11 9 7
13 13 C 1.37641 * 119.92187 * 179.97438 * 12 11 9
14 14 C 1.38795 * 120.38548 * 359.97438 * 13 12 11
15 15 C 1.50698 * 119.77100 * 179.97438 * 14 13 12
16 16 F 1.39895 * 109.47414 * 0.02562 * 15 14 13
17 17 F 1.39901 * 109.47364 * 119.99886 * 15 14 13
18 18 F 1.39900 * 109.46975 * 239.99506 * 15 14 13
19 19 C 1.37947 * 120.45749 * 0.02562 * 14 13 12
20 20 C 1.38969 * 120.06569 * 359.75276 * 19 14 13
21 21 N 1.38718 * 120.19020 * 180.25012 * 20 19 14
22 22 H 0.96997 * 120.00109 * 0.02562 * 1 2 3
23 23 H 1.07998 * 120.03901 * 0.02562 * 12 11 9
24 24 H 1.07996 * 119.80933 * 179.97438 * 13 12 11
25 25 H 1.07995 * 119.96362 * 179.97438 * 19 14 13
26 26 H 0.97008 * 120.00129 * 204.23073 * 21 20 19
27 27 H 0.97003 * 120.00184 * 24.24259 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3054 0.0000 0.0000
3 14 2.2394 1.6177 0.0000
4 1 2.4869 2.0464 -1.4001
5 1 1.4368 2.6526 0.7000
6 1 3.5369 1.4401 0.7000
7 6 2.0070 -1.2153 0.0005
8 1 3.0871 -1.2153 0.0001
9 6 1.2981 -2.4431 -0.0049
10 8 0.0797 -2.4431 -0.0049
11 6 2.0351 -3.7199 -0.0104
12 6 3.4285 -3.7290 0.1117
13 6 4.1103 -4.9246 0.1064
14 6 3.4233 -6.1241 -0.0191
15 6 4.1839 -7.4251 -0.0239
16 9 5.5521 -7.1660 0.1102
17 9 3.7537 -8.2207 1.0434
18 9 3.9517 -8.0965 -1.2291
19 6 2.0492 -6.1335 -0.1406
20 6 1.3414 -4.9376 -0.1328
21 7 -0.0408 -4.9443 -0.2495
22 1 -0.4850 0.8400 -0.0004
23 1 3.9686 -2.7991 0.2109
24 1 5.1862 -4.9295 0.2003
25 1 1.5228 -7.0714 -0.2381
26 1 -0.5026 -4.1625 -0.5909
27 1 -0.5457 -5.7308 0.0104
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261350684.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:30:31
Heat of formation + Delta-G solvation = -170.342904 kcal
Electronic energy + Delta-G solvation = -18820.664770 eV
Core-core repulsion = 15128.130547 eV
Total energy + Delta-G solvation = -3692.534223 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 259.056 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-49.93194 -47.45353 -47.39508 -39.09039 -36.38987 -34.04820 -32.70035 -31.36477
-28.29041 -27.22191 -25.52880 -22.27008 -21.73405 -19.85242 -18.25963 -18.14635
-18.03166 -16.75516 -16.18877 -15.60641 -15.08415 -14.55135 -14.32410 -14.10832
-13.85531 -13.75347 -13.63931 -13.57447 -13.25634 -13.00135 -12.74099 -12.42889
-11.72893 -11.53658 -11.41615 -11.06770 -10.90669 -10.46265 -10.26809 -9.99950
-9.11212 -8.41508 -7.61584 -6.99330 -6.44209 -5.04463 1.37451 2.06000
2.93989 2.97299 3.06521 3.09481 3.78245 3.90975 4.02283 4.30708
4.43752 4.72743 4.75284 5.32502 5.56801 5.63855 5.76716 5.99249
6.27740 6.33738 6.65315 6.77808 7.03709 7.12770 7.33702 7.88489
8.20734 8.49356 8.65125 8.80447 10.14949 10.36459
Molecular weight = 259.06amu
Principal moments of inertia in cm(-1)
A = 0.034501 B = 0.005487 C = 0.004881
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 811.371857 B = 5101.704413 C = 5735.159165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.731 5.731
2 C 0.079 3.921
3 Si 0.908 3.092
4 H -0.268 1.268
5 H -0.276 1.276
6 H -0.260 1.260
7 C -0.510 4.510
8 H 0.076 0.924
9 C 0.391 3.609
10 O -0.544 6.544
11 C -0.148 4.148
12 C -0.055 4.055
13 C -0.148 4.148
14 C -0.150 4.150
15 C 0.509 3.491
16 F -0.181 7.181
17 F -0.183 7.183
18 F -0.182 7.182
19 C -0.168 4.168
20 C 0.239 3.761
21 N -0.860 5.860
22 H 0.275 0.725
23 H 0.138 0.862
24 H 0.126 0.874
25 H 0.121 0.879
26 H 0.418 0.582
27 H 0.383 0.617
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.964 -8.528 -0.253 10.410
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.359 5.359
2 C -0.145 4.145
3 Si 0.732 3.268
4 H -0.193 1.193
5 H -0.201 1.201
6 H -0.184 1.184
7 C -0.541 4.541
8 H 0.095 0.905
9 C 0.289 3.711
10 O -0.435 6.435
11 C -0.154 4.154
12 C -0.074 4.074
13 C -0.168 4.168
14 C -0.152 4.152
15 C 0.455 3.545
16 F -0.162 7.162
17 F -0.164 7.164
18 F -0.164 7.164
19 C -0.192 4.192
20 C 0.131 3.869
21 N -0.407 5.407
22 H 0.086 0.914
23 H 0.156 0.844
24 H 0.144 0.856
25 H 0.139 0.861
26 H 0.258 0.742
27 H 0.210 0.790
Dipole moment (debyes) X Y Z Total
from point charges 5.220 -8.450 -0.268 9.936
hybrid contribution 0.423 0.364 0.012 0.558
sum 5.642 -8.086 -0.256 9.863
Atomic orbital electron populations
1.69937 1.07562 1.28334 1.30095 1.26015 0.94695 1.01135 0.92648
0.86337 0.80506 0.80690 0.79289 1.19322 1.20126 1.18377 1.20941
0.95104 0.91490 1.46556 0.90539 1.17949 0.88267 0.85636 0.79238
1.90286 1.15014 1.87556 1.50640 1.21792 0.94628 0.96490 1.02452
1.21303 0.93372 0.97323 0.95368 1.20628 0.99733 0.91137 1.05311
1.19561 0.94207 0.91239 1.10168 1.18479 0.77251 0.85435 0.73374
1.93130 1.33426 1.94059 1.95617 1.93182 1.89658 1.76491 1.57077
1.93183 1.94337 1.82534 1.46315 1.20226 0.92236 0.97505 1.09184
1.17845 0.85256 0.91934 0.91893 1.42873 1.03275 1.21516 1.72992
0.91360 0.84403 0.85649 0.86145 0.74170 0.78996
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.73 -19.80 11.73 55.57 0.65 -19.14 15
2 C 0.08 2.01 5.50 -17.31 -0.10 1.91 15
3 Si 0.91 18.32 29.56 -169.99 -5.03 13.30 15
4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15
5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15
6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15
7 C -0.51 -13.18 8.85 -37.44 -0.33 -13.51 15
8 H 0.08 1.79 6.06 -52.48 -0.32 1.47 15
9 C 0.39 10.30 6.89 -34.49 -0.24 10.07 15
10 O -0.54 -15.55 12.36 5.06 0.06 -15.49 15
11 C -0.15 -3.29 5.90 -104.63 -0.62 -3.91 15
12 C -0.05 -1.05 9.42 -39.19 -0.37 -1.42 15
13 C -0.15 -2.50 9.41 -39.59 -0.37 -2.88 15
14 C -0.15 -2.52 5.38 -104.52 -0.56 -3.08 15
15 C 0.51 7.68 3.31 36.00 0.12 7.80 15
16 F -0.18 -2.63 15.95 2.25 0.04 -2.60 15
17 F -0.18 -2.74 17.23 2.25 0.04 -2.70 15
18 F -0.18 -2.74 17.23 2.25 0.04 -2.70 15
19 C -0.17 -2.93 9.45 -39.42 -0.37 -3.30 15
20 C 0.24 4.80 6.77 -83.56 -0.57 4.24 15
21 N -0.86 -16.18 8.50 32.58 0.28 -15.90 15
22 H 0.28 6.71 8.29 -40.82 -0.34 6.37 15
23 H 0.14 2.50 6.24 -52.49 -0.33 2.17 15
24 H 0.13 1.82 7.13 -52.49 -0.37 1.44 15
25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15
26 H 0.42 8.89 6.09 -40.82 -0.25 8.64 15
27 H 0.38 5.80 8.90 -40.82 -0.36 5.44 15
LS Contribution 255.54 15.07 3.85 3.85
Total: -1.00 -28.55 255.54 -4.66 -33.21
By element:
Atomic # 1 Polarization: 13.44 SS G_CDS: -1.19 Total: 12.25 kcal
Atomic # 6 Polarization: -0.68 SS G_CDS: -3.40 Total: -4.09 kcal
Atomic # 7 Polarization: -35.97 SS G_CDS: 0.93 Total: -35.04 kcal
Atomic # 8 Polarization: -15.55 SS G_CDS: 0.06 Total: -15.49 kcal
Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -7.99 kcal
Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal
Total LS contribution 3.85 Total: 3.85 kcal
Total: -28.55 -4.66 -33.21 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261350684.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -137.134 kcal
(2) G-P(sol) polarization free energy of solvation -28.547 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -170.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds