Wall clock time and date at job start Mon Mar 30 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47183 * 269.99788 * 3 2 1 5 5 H 1.48493 * 109.47019 * 30.00011 * 3 2 1 6 6 H 1.48498 * 109.46965 * 150.00339 * 3 2 1 7 7 C 1.40332 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.41782 * 119.99759 * 0.27971 * 7 2 1 10 10 O 1.21840 * 120.00144 * 359.71822 * 9 7 2 11 11 C 1.47425 * 119.99990 * 179.72739 * 9 7 2 12 12 C 1.39870 * 120.22294 * 5.79356 * 11 9 7 13 13 C 1.37641 * 119.92187 * 179.97438 * 12 11 9 14 14 C 1.38795 * 120.38548 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.77100 * 179.97438 * 14 13 12 16 16 F 1.39895 * 109.47414 * 0.02562 * 15 14 13 17 17 F 1.39901 * 109.47364 * 119.99886 * 15 14 13 18 18 F 1.39900 * 109.46975 * 239.99506 * 15 14 13 19 19 C 1.37947 * 120.45749 * 0.02562 * 14 13 12 20 20 C 1.38969 * 120.06569 * 359.75276 * 19 14 13 21 21 N 1.38718 * 120.19020 * 180.25012 * 20 19 14 22 22 H 0.96997 * 120.00109 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.03901 * 0.02562 * 12 11 9 24 24 H 1.07996 * 119.80933 * 179.97438 * 13 12 11 25 25 H 1.07995 * 119.96362 * 179.97438 * 19 14 13 26 26 H 0.97008 * 120.00129 * 204.23073 * 21 20 19 27 27 H 0.97003 * 120.00184 * 24.24259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4401 0.7000 7 6 2.0070 -1.2153 0.0005 8 1 3.0871 -1.2153 0.0001 9 6 1.2981 -2.4431 -0.0049 10 8 0.0797 -2.4431 -0.0049 11 6 2.0351 -3.7199 -0.0104 12 6 3.4285 -3.7290 0.1117 13 6 4.1103 -4.9246 0.1064 14 6 3.4233 -6.1241 -0.0191 15 6 4.1839 -7.4251 -0.0239 16 9 5.5521 -7.1660 0.1102 17 9 3.7537 -8.2207 1.0434 18 9 3.9517 -8.0965 -1.2291 19 6 2.0492 -6.1335 -0.1406 20 6 1.3414 -4.9376 -0.1328 21 7 -0.0408 -4.9443 -0.2495 22 1 -0.4850 0.8400 -0.0004 23 1 3.9686 -2.7991 0.2109 24 1 5.1862 -4.9295 0.2003 25 1 1.5228 -7.0714 -0.2381 26 1 -0.5026 -4.1625 -0.5909 27 1 -0.5457 -5.7308 0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261350684.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:31 Heat of formation + Delta-G solvation = -170.342904 kcal Electronic energy + Delta-G solvation = -18820.664770 eV Core-core repulsion = 15128.130547 eV Total energy + Delta-G solvation = -3692.534223 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.93194 -47.45353 -47.39508 -39.09039 -36.38987 -34.04820 -32.70035 -31.36477 -28.29041 -27.22191 -25.52880 -22.27008 -21.73405 -19.85242 -18.25963 -18.14635 -18.03166 -16.75516 -16.18877 -15.60641 -15.08415 -14.55135 -14.32410 -14.10832 -13.85531 -13.75347 -13.63931 -13.57447 -13.25634 -13.00135 -12.74099 -12.42889 -11.72893 -11.53658 -11.41615 -11.06770 -10.90669 -10.46265 -10.26809 -9.99950 -9.11212 -8.41508 -7.61584 -6.99330 -6.44209 -5.04463 1.37451 2.06000 2.93989 2.97299 3.06521 3.09481 3.78245 3.90975 4.02283 4.30708 4.43752 4.72743 4.75284 5.32502 5.56801 5.63855 5.76716 5.99249 6.27740 6.33738 6.65315 6.77808 7.03709 7.12770 7.33702 7.88489 8.20734 8.49356 8.65125 8.80447 10.14949 10.36459 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.005487 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.371857 B = 5101.704413 C = 5735.159165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.731 5.731 2 C 0.079 3.921 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.510 4.510 8 H 0.076 0.924 9 C 0.391 3.609 10 O -0.544 6.544 11 C -0.148 4.148 12 C -0.055 4.055 13 C -0.148 4.148 14 C -0.150 4.150 15 C 0.509 3.491 16 F -0.181 7.181 17 F -0.183 7.183 18 F -0.182 7.182 19 C -0.168 4.168 20 C 0.239 3.761 21 N -0.860 5.860 22 H 0.275 0.725 23 H 0.138 0.862 24 H 0.126 0.874 25 H 0.121 0.879 26 H 0.418 0.582 27 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -8.528 -0.253 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.541 4.541 8 H 0.095 0.905 9 C 0.289 3.711 10 O -0.435 6.435 11 C -0.154 4.154 12 C -0.074 4.074 13 C -0.168 4.168 14 C -0.152 4.152 15 C 0.455 3.545 16 F -0.162 7.162 17 F -0.164 7.164 18 F -0.164 7.164 19 C -0.192 4.192 20 C 0.131 3.869 21 N -0.407 5.407 22 H 0.086 0.914 23 H 0.156 0.844 24 H 0.144 0.856 25 H 0.139 0.861 26 H 0.258 0.742 27 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.220 -8.450 -0.268 9.936 hybrid contribution 0.423 0.364 0.012 0.558 sum 5.642 -8.086 -0.256 9.863 Atomic orbital electron populations 1.69937 1.07562 1.28334 1.30095 1.26015 0.94695 1.01135 0.92648 0.86337 0.80506 0.80690 0.79289 1.19322 1.20126 1.18377 1.20941 0.95104 0.91490 1.46556 0.90539 1.17949 0.88267 0.85636 0.79238 1.90286 1.15014 1.87556 1.50640 1.21792 0.94628 0.96490 1.02452 1.21303 0.93372 0.97323 0.95368 1.20628 0.99733 0.91137 1.05311 1.19561 0.94207 0.91239 1.10168 1.18479 0.77251 0.85435 0.73374 1.93130 1.33426 1.94059 1.95617 1.93182 1.89658 1.76491 1.57077 1.93183 1.94337 1.82534 1.46315 1.20226 0.92236 0.97505 1.09184 1.17845 0.85256 0.91934 0.91893 1.42873 1.03275 1.21516 1.72992 0.91360 0.84403 0.85649 0.86145 0.74170 0.78996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.80 11.73 55.57 0.65 -19.14 15 2 C 0.08 2.01 5.50 -17.31 -0.10 1.91 15 3 Si 0.91 18.32 29.56 -169.99 -5.03 13.30 15 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.51 -13.18 8.85 -37.44 -0.33 -13.51 15 8 H 0.08 1.79 6.06 -52.48 -0.32 1.47 15 9 C 0.39 10.30 6.89 -34.49 -0.24 10.07 15 10 O -0.54 -15.55 12.36 5.06 0.06 -15.49 15 11 C -0.15 -3.29 5.90 -104.63 -0.62 -3.91 15 12 C -0.05 -1.05 9.42 -39.19 -0.37 -1.42 15 13 C -0.15 -2.50 9.41 -39.59 -0.37 -2.88 15 14 C -0.15 -2.52 5.38 -104.52 -0.56 -3.08 15 15 C 0.51 7.68 3.31 36.00 0.12 7.80 15 16 F -0.18 -2.63 15.95 2.25 0.04 -2.60 15 17 F -0.18 -2.74 17.23 2.25 0.04 -2.70 15 18 F -0.18 -2.74 17.23 2.25 0.04 -2.70 15 19 C -0.17 -2.93 9.45 -39.42 -0.37 -3.30 15 20 C 0.24 4.80 6.77 -83.56 -0.57 4.24 15 21 N -0.86 -16.18 8.50 32.58 0.28 -15.90 15 22 H 0.28 6.71 8.29 -40.82 -0.34 6.37 15 23 H 0.14 2.50 6.24 -52.49 -0.33 2.17 15 24 H 0.13 1.82 7.13 -52.49 -0.37 1.44 15 25 H 0.12 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.42 8.89 6.09 -40.82 -0.25 8.64 15 27 H 0.38 5.80 8.90 -40.82 -0.36 5.44 15 LS Contribution 255.54 15.07 3.85 3.85 Total: -1.00 -28.55 255.54 -4.66 -33.21 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -1.19 Total: 12.25 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -3.40 Total: -4.09 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 0.93 Total: -35.04 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.06 Total: -15.49 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -7.99 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.55 -4.66 -33.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350684.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.134 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds