Wall clock time and date at job start Mon Mar 30 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30537 * 1 3 3 Si 1.86801 * 119.99995 * 2 1 4 4 H 1.48501 * 109.47183 * 269.99788 * 3 2 1 5 5 H 1.48493 * 109.47019 * 30.00011 * 3 2 1 6 6 H 1.48498 * 109.46965 * 150.00339 * 3 2 1 7 7 C 1.40332 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99846 * 179.97438 * 7 2 1 9 9 C 1.41782 * 119.99759 * 0.27971 * 7 2 1 10 10 O 1.21840 * 120.00144 * 359.71822 * 9 7 2 11 11 C 1.47425 * 119.99990 * 179.72739 * 9 7 2 12 12 C 1.39870 * 120.22294 * 5.79356 * 11 9 7 13 13 C 1.37641 * 119.92187 * 179.97438 * 12 11 9 14 14 C 1.38795 * 120.38548 * 359.97438 * 13 12 11 15 15 C 1.50698 * 119.77100 * 179.97438 * 14 13 12 16 16 F 1.39895 * 109.47414 * 0.02562 * 15 14 13 17 17 F 1.39901 * 109.47364 * 119.99886 * 15 14 13 18 18 F 1.39900 * 109.46975 * 239.99506 * 15 14 13 19 19 C 1.37947 * 120.45749 * 0.02562 * 14 13 12 20 20 C 1.38969 * 120.06569 * 359.75276 * 19 14 13 21 21 N 1.38718 * 120.19020 * 180.25012 * 20 19 14 22 22 H 0.96997 * 120.00109 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.03901 * 0.02562 * 12 11 9 24 24 H 1.07996 * 119.80933 * 179.97438 * 13 12 11 25 25 H 1.07995 * 119.96362 * 179.97438 * 19 14 13 26 26 H 0.97008 * 120.00129 * 204.23073 * 21 20 19 27 27 H 0.97003 * 120.00184 * 24.24259 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3054 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4869 2.0464 -1.4001 5 1 1.4368 2.6526 0.7000 6 1 3.5369 1.4401 0.7000 7 6 2.0070 -1.2153 0.0005 8 1 3.0871 -1.2153 0.0001 9 6 1.2981 -2.4431 -0.0049 10 8 0.0797 -2.4431 -0.0049 11 6 2.0351 -3.7199 -0.0104 12 6 3.4285 -3.7290 0.1117 13 6 4.1103 -4.9246 0.1064 14 6 3.4233 -6.1241 -0.0191 15 6 4.1839 -7.4251 -0.0239 16 9 5.5521 -7.1660 0.1102 17 9 3.7537 -8.2207 1.0434 18 9 3.9517 -8.0965 -1.2291 19 6 2.0492 -6.1335 -0.1406 20 6 1.3414 -4.9376 -0.1328 21 7 -0.0408 -4.9443 -0.2495 22 1 -0.4850 0.8400 -0.0004 23 1 3.9686 -2.7991 0.2109 24 1 5.1862 -4.9295 0.2003 25 1 1.5228 -7.0714 -0.2381 26 1 -0.5026 -4.1625 -0.5909 27 1 -0.5457 -5.7308 0.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261350684.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:31 Heat of formation + Delta-G solvation = -187.899460 kcal Electronic energy + Delta-G solvation = -18821.426080 eV Core-core repulsion = 15128.130547 eV Total energy + Delta-G solvation = -3693.295532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.13007 -48.63576 -48.59342 -40.64095 -38.22818 -35.58458 -34.60080 -32.90754 -29.78784 -28.99753 -27.02354 -23.74269 -23.27452 -21.53489 -19.45348 -19.39145 -19.34784 -18.54706 -17.81819 -17.27181 -16.52355 -16.13045 -15.54351 -15.46794 -15.24985 -15.03582 -14.89080 -14.75667 -14.73076 -14.63378 -14.36135 -13.98635 -13.45304 -13.27544 -12.84835 -12.70648 -12.47140 -12.09885 -11.95431 -11.46086 -10.98350 -9.94933 -9.55341 -8.51281 -8.32286 -7.04163 -0.13113 0.60911 1.38444 1.41177 1.56418 1.68409 2.12107 2.21972 2.72584 2.74877 3.04681 3.32382 3.47337 3.73033 3.93945 4.20283 4.24109 4.53378 4.75744 4.91257 5.18406 5.19775 5.32026 5.57933 5.84305 5.97559 6.64534 6.72636 6.77021 7.17464 8.24116 8.47980 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.034501 B = 0.005487 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.371857 B = 5101.704413 C = 5735.159165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.246 1.246 7 C -0.540 4.540 8 H 0.095 0.905 9 C 0.370 3.630 10 O -0.582 6.582 11 C -0.191 4.191 12 C -0.052 4.052 13 C -0.141 4.141 14 C -0.144 4.144 15 C 0.520 3.480 16 F -0.174 7.174 17 F -0.179 7.179 18 F -0.179 7.179 19 C -0.161 4.161 20 C 0.227 3.773 21 N -0.859 5.859 22 H 0.281 0.719 23 H 0.144 0.856 24 H 0.156 0.844 25 H 0.146 0.854 26 H 0.406 0.594 27 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.104 -9.191 -0.192 12.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.192 4.192 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.169 1.169 7 C -0.571 4.571 8 H 0.113 0.887 9 C 0.271 3.729 10 O -0.476 6.476 11 C -0.197 4.197 12 C -0.071 4.071 13 C -0.161 4.161 14 C -0.146 4.146 15 C 0.465 3.535 16 F -0.155 7.155 17 F -0.160 7.160 18 F -0.160 7.160 19 C -0.184 4.184 20 C 0.118 3.882 21 N -0.405 5.405 22 H 0.092 0.908 23 H 0.162 0.838 24 H 0.173 0.827 25 H 0.164 0.836 26 H 0.244 0.756 27 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.376 -9.160 -0.199 11.763 hybrid contribution -0.227 0.430 -0.012 0.486 sum 7.150 -8.731 -0.211 11.287 Atomic orbital electron populations 1.70064 1.09688 1.29797 1.31464 1.27153 0.95487 1.05265 0.91325 0.85109 0.79213 0.75107 0.79644 1.18523 1.19624 1.16941 1.21436 0.96245 0.92207 1.47179 0.88737 1.18550 0.88231 0.87762 0.78334 1.90245 1.16491 1.88694 1.52144 1.21536 0.95969 0.95627 1.06539 1.21373 0.92235 0.98692 0.94788 1.20875 1.01102 0.90160 1.03999 1.19837 0.94216 0.92316 1.08244 1.18107 0.77267 0.84558 0.73533 1.93151 1.32782 1.93992 1.95585 1.93199 1.89670 1.76232 1.56939 1.93199 1.94347 1.82323 1.46162 1.20429 0.92652 0.97403 1.07894 1.18015 0.85671 0.92283 0.92220 1.42787 1.03272 1.21663 1.72819 0.90816 0.83827 0.82667 0.83628 0.75619 0.77123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.73 11.73 21.89 0.26 -43.48 15 2 C 0.03 1.40 5.50 85.39 0.47 1.87 15 3 Si 0.99 37.51 29.56 68.60 2.03 39.54 15 4 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 5 H -0.27 -9.96 7.11 99.48 0.71 -9.26 15 6 H -0.25 -8.69 7.11 99.48 0.71 -7.98 15 7 C -0.54 -28.46 8.85 23.66 0.21 -28.25 15 8 H 0.09 4.42 6.06 -2.91 -0.02 4.40 15 9 C 0.37 20.23 6.89 25.57 0.18 20.41 15 10 O -0.58 -34.89 12.36 -4.80 -0.06 -34.95 15 11 C -0.19 -8.59 5.90 -19.87 -0.12 -8.71 15 12 C -0.05 -1.95 9.42 22.52 0.21 -1.74 15 13 C -0.14 -4.41 9.41 22.26 0.21 -4.20 15 14 C -0.14 -4.43 5.38 -19.80 -0.11 -4.54 15 15 C 0.52 13.88 3.31 71.24 0.24 14.11 15 16 F -0.17 -4.40 15.95 44.97 0.72 -3.68 15 17 F -0.18 -4.76 17.23 44.97 0.77 -3.98 15 18 F -0.18 -4.77 17.23 44.97 0.77 -4.00 15 19 C -0.16 -5.27 9.45 22.38 0.21 -5.06 15 20 C 0.23 9.05 6.77 38.82 0.26 9.31 15 21 N -0.86 -32.83 8.50 -50.82 -0.43 -33.26 15 22 H 0.28 14.16 8.29 -92.71 -0.77 13.39 15 23 H 0.14 5.07 6.24 -2.91 -0.02 5.05 15 24 H 0.16 3.89 7.13 -2.91 -0.02 3.87 15 25 H 0.15 3.98 8.06 -2.91 -0.02 3.95 15 26 H 0.41 18.05 6.09 -92.70 -0.56 17.48 15 27 H 0.40 12.03 8.90 -92.71 -0.83 11.20 15 Total: -1.00 -62.97 255.54 5.71 -57.27 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.12 Total: 33.33 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 1.76 Total: -6.79 kcal Atomic # 7 Polarization: -76.56 SS G_CDS: -0.18 Total: -76.74 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -0.06 Total: -34.95 kcal Atomic # 9 Polarization: -13.92 SS G_CDS: 2.27 Total: -11.66 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -62.97 5.71 -57.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261350684.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.634 kcal (2) G-P(sol) polarization free energy of solvation -62.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds