Wall clock time and date at job start Mon Mar 30 2020 06:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.28659 * 124.93222 * 89.69649 * 10 9 7 12 12 C 1.32522 * 117.88185 * 179.82674 * 11 10 9 13 13 C 1.34616 * 113.15325 * 0.45047 * 12 11 10 14 14 S 1.70915 * 124.92486 * 269.99655 * 10 9 7 15 15 C 1.50995 * 125.22101 * 179.74686 * 13 12 11 16 16 C 1.53264 * 108.59418 * 343.98375 * 15 13 12 17 17 F 1.39905 * 109.53433 * 289.37214 * 16 15 13 18 18 F 1.39903 * 109.63433 * 169.13921 * 16 15 13 19 19 C 1.53142 * 109.01305 * 49.22603 * 16 15 13 20 20 C 1.52128 * 124.20202 * 180.24202 * 12 11 10 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08999 * 109.61702 * 103.68283 * 15 13 12 25 25 H 1.09007 * 109.62064 * 224.21910 * 15 13 12 26 26 H 1.09001 * 109.47583 * 169.64036 * 19 16 15 27 27 H 1.09004 * 109.47623 * 49.62534 * 19 16 15 28 28 H 1.08999 * 109.59362 * 282.43098 * 20 12 11 29 29 H 1.09005 * 109.59543 * 42.89007 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7131 -4.2057 1.0420 12 6 3.5644 -5.2075 0.8749 13 6 3.8069 -5.4857 -0.4196 14 16 2.8661 -4.3822 -1.4149 15 6 4.7348 -6.5673 -0.9189 16 6 5.6373 -7.0095 0.2383 17 9 6.5508 -5.9920 0.5342 18 9 6.3300 -8.1700 -0.1229 19 6 4.7693 -7.2925 1.4678 20 6 4.2163 -5.9748 2.0153 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 4.1501 -7.4169 -1.2716 25 1 5.3467 -6.1778 -1.7326 26 1 5.3724 -7.7798 2.2340 27 1 3.9425 -7.9447 1.1867 28 1 5.0298 -5.3836 2.4358 29 1 3.4751 -6.1821 2.7873 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261359090.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:32 Heat of formation + Delta-G solvation = -78.537889 kcal Electronic energy + Delta-G solvation = -16872.189065 eV Core-core repulsion = 13749.848982 eV Total energy + Delta-G solvation = -3122.340083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.054 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.03879 -47.03098 -39.52848 -35.67460 -33.25553 -31.19696 -30.25390 -27.42955 -24.37601 -23.97402 -22.33934 -20.73964 -18.46689 -18.04421 -17.05969 -16.53499 -16.53153 -15.80882 -14.88563 -14.69653 -14.30810 -13.86731 -13.39836 -13.33480 -13.15363 -13.00279 -12.78140 -12.37853 -12.20401 -12.00746 -11.63011 -11.33694 -11.22653 -10.82407 -10.75362 -10.32714 -10.10123 -9.58431 -8.86196 -8.68932 -8.53123 -8.00587 -6.17433 -4.22125 1.26243 1.84530 2.36734 3.25101 3.30352 3.34167 3.40573 3.62191 3.98648 4.18853 4.26515 4.36003 4.56148 4.86747 5.13112 5.17687 5.19856 5.32886 5.49072 5.53960 5.68742 5.84846 5.89076 6.20778 6.70659 7.20694 7.32158 7.76774 8.06654 8.44767 8.79809 9.42129 10.92712 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.037549 B = 0.005160 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.508591 B = 5425.479845 C = 5523.996585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.901 3.099 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.083 3.917 10 C 0.135 3.865 11 N -0.495 5.495 12 C 0.083 3.917 13 C -0.283 4.283 14 S 0.103 5.897 15 C -0.065 4.065 16 C 0.293 3.707 17 F -0.193 7.193 18 F -0.201 7.201 19 C -0.154 4.154 20 C -0.038 4.038 21 H 0.265 0.735 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.901 -14.473 -0.531 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.043 3.957 10 C -0.143 4.143 11 N -0.208 5.208 12 C -0.050 4.050 13 C -0.404 4.404 14 S 0.362 5.638 15 C -0.105 4.105 16 C 0.256 3.744 17 F -0.174 7.174 18 F -0.182 7.182 19 C -0.192 4.192 20 C -0.077 4.077 21 H 0.074 0.926 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.122 0.878 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.451 -13.974 -1.141 15.877 hybrid contribution 0.991 0.539 0.614 1.284 sum 8.442 -13.435 -0.527 15.876 Atomic orbital electron populations 1.69948 1.06024 1.27171 1.49717 1.24962 0.94959 0.99367 0.94687 0.86373 0.80105 0.82892 0.77761 1.19579 1.20744 1.20718 1.20935 0.93144 0.89099 1.52225 0.92194 1.18205 0.91016 0.86633 0.99857 1.28067 0.99166 0.98779 0.88298 1.65951 1.12805 1.09700 1.32334 1.20768 0.96583 0.95044 0.92636 1.25214 1.11007 1.07279 0.96880 1.83786 1.39019 1.26624 1.14341 1.20825 0.95697 0.97356 0.96605 1.21007 0.83374 0.73663 0.96385 1.93026 1.69541 1.60392 1.94422 1.93002 1.81778 1.50200 1.93193 1.22540 1.00357 0.99942 0.96372 1.20222 1.00089 0.92609 0.94811 0.92558 0.92611 0.93721 0.87833 0.88576 0.88631 0.88383 0.89135 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 15 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.51 -14.20 9.09 -34.44 -0.31 -14.51 15 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 15 9 C 0.08 2.11 5.56 -29.03 -0.16 1.95 15 10 C 0.13 2.99 6.57 -13.61 -0.09 2.90 15 11 N -0.49 -10.68 10.51 -7.33 -0.08 -10.76 15 12 C 0.08 1.47 6.75 -82.87 -0.56 0.91 15 13 C -0.28 -4.62 6.32 -35.45 -0.22 -4.84 15 14 S 0.10 1.88 23.17 -107.50 -2.49 -0.61 15 15 C -0.06 -0.81 5.77 -27.60 -0.16 -0.97 15 16 C 0.29 3.62 2.12 -26.52 -0.06 3.56 15 17 F -0.19 -2.84 16.24 2.25 0.04 -2.80 15 18 F -0.20 -2.43 17.08 2.25 0.04 -2.39 15 19 C -0.15 -1.62 5.47 -26.64 -0.15 -1.77 15 20 C -0.04 -0.50 5.93 -27.16 -0.16 -0.66 15 21 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 22 H 0.06 1.50 8.14 -51.93 -0.42 1.08 15 23 H 0.04 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.10 1.15 8.14 -51.93 -0.42 0.72 15 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.10 0.90 8.10 -51.93 -0.42 0.48 15 28 H 0.09 1.22 7.89 -51.93 -0.41 0.81 15 29 H 0.10 1.17 8.14 -51.93 -0.42 0.74 15 LS Contribution 271.07 15.07 4.09 4.09 Total: -1.00 -29.81 271.07 -7.57 -37.38 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -2.91 Total: -4.63 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.97 Total: -11.78 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.66 Total: -35.48 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.08 Total: -5.19 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.81 -7.57 -37.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359090.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.160 kcal (2) G-P(sol) polarization free energy of solvation -29.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds