Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47377 * 2 1 4 4 C 1.50705 * 109.46853 * 239.99829 * 2 1 3 5 5 H 1.08001 * 119.99920 * 240.00318 * 4 2 1 6 6 C 1.37876 * 119.99950 * 59.99981 * 4 2 1 7 7 N 1.31515 * 120.00225 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47510 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47370 * 120.00362 * 8 6 4 11 11 H 1.48501 * 109.47209 * 240.00334 * 8 6 4 12 12 N 1.46901 * 109.46976 * 120.00254 * 2 1 3 13 13 C 1.47242 * 110.99923 * 180.75546 * 12 2 1 14 14 C 1.53086 * 108.47521 * 54.54542 * 13 12 2 15 15 C 1.50310 * 109.71456 * 48.99681 * 14 13 12 16 16 C 1.29954 * 122.87378 * 343.46640 * 15 14 13 17 17 Br 1.89107 * 118.36704 * 180.38848 * 16 15 14 18 18 C 1.46841 * 110.99644 * 303.68853 * 12 2 1 19 19 H 1.08998 * 109.47535 * 186.75245 * 1 2 3 20 20 H 1.09000 * 109.46798 * 306.75435 * 1 2 3 21 21 H 1.09002 * 109.46769 * 66.74953 * 1 2 3 22 22 H 0.96999 * 120.00309 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.63484 * 174.23910 * 13 12 2 24 24 H 1.08993 * 109.63376 * 294.85114 * 13 12 2 25 25 H 1.08995 * 109.43243 * 169.05869 * 14 13 12 26 26 H 1.09002 * 109.43081 * 288.90874 * 14 13 12 27 27 H 1.07997 * 118.56048 * 163.47975 * 15 14 13 28 28 H 1.09007 * 109.33907 * 47.80323 * 18 12 2 29 29 H 1.09007 * 109.33958 * 167.31089 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 3.1473 -2.2865 -3.6038 10 1 1.1677 -1.5868 -4.8165 11 1 3.1472 -0.1860 -4.8160 12 7 2.0197 -0.6926 1.1994 13 6 3.4914 -0.6965 1.2426 14 6 3.9841 0.7482 1.1255 15 6 3.2378 1.6187 2.0974 16 6 2.1278 1.2516 2.6648 17 35 1.2894 2.4535 3.8600 18 6 1.4781 -0.0795 2.4189 19 1 -0.3634 -1.0205 0.1208 20 1 -0.3633 0.6149 0.8234 21 1 -0.3633 0.4057 -0.9442 22 1 0.7095 1.1617 -3.4844 23 1 3.8290 -1.1232 2.1870 24 1 3.8806 -1.2847 0.4115 25 1 5.0502 0.7870 1.3489 26 1 3.8137 1.1083 0.1109 27 1 3.6417 2.5919 2.3343 28 1 0.4027 0.0591 2.3063 29 1 1.6680 -0.7361 3.2680 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281691894.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 22.951838 kcal Electronic energy + Delta-G solvation = -12965.426477 eV Core-core repulsion = 10742.103442 eV Total energy + Delta-G solvation = -2223.323035 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.01445 -33.97135 -32.13786 -31.27201 -28.86876 -28.65599 -25.20934 -23.81419 -22.30258 -20.14950 -17.04315 -16.08961 -15.75383 -14.72450 -14.39808 -13.96821 -13.55114 -13.05362 -12.34658 -11.96332 -11.71612 -11.52264 -11.05423 -10.90063 -10.66420 -10.53380 -10.38363 -10.10980 -9.94434 -9.86271 -9.78223 -8.92163 -8.43420 -8.39060 -7.26657 -6.02823 -4.08304 2.08275 2.25510 3.27784 3.36368 3.40051 4.38776 4.90068 5.25017 5.32240 5.55875 5.71299 5.77679 5.89366 6.01571 6.22463 6.45333 6.58055 6.73228 6.86296 6.91021 7.04573 7.11364 7.49627 7.66098 7.80123 8.15007 8.29329 8.53146 8.98559 9.57001 11.03321 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.042408 B = 0.006931 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.089837 B = 4039.124351 C = 4263.364984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.205 3.795 3 H 0.011 0.989 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.517 5.517 13 C 0.062 3.938 14 C -0.124 4.124 15 C -0.106 4.106 16 C -0.144 4.144 17 Br -0.100 7.100 18 C 0.091 3.909 19 H 0.033 0.967 20 H 0.009 0.991 21 H 0.089 0.911 22 H 0.260 0.740 23 H 0.056 0.944 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.091 0.909 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.860 2.418 11.153 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.099 3.901 3 H 0.029 0.971 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.239 5.239 13 C -0.067 4.067 14 C -0.163 4.163 15 C -0.127 4.127 16 C -0.224 4.224 17 Br -0.017 7.017 18 C -0.039 4.039 19 H 0.052 0.948 20 H 0.028 0.972 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.074 0.926 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.109 0.891 29 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.278 2.445 11.409 11.888 hybrid contribution 0.731 0.421 -1.079 1.370 sum 3.010 2.866 10.329 11.134 Atomic orbital electron populations 1.21895 0.97917 0.98609 1.01189 1.19381 0.92246 0.92829 0.85643 0.97096 1.21149 1.30948 1.12248 0.89660 0.91931 1.24924 0.95239 0.95073 0.98988 1.69902 1.36872 1.22993 1.23320 0.86496 0.78620 0.79627 0.83000 1.19724 1.21064 1.21194 1.62996 1.06514 1.52263 1.02166 1.22098 0.89156 0.94158 1.01272 1.21205 0.98492 0.97151 0.99480 1.22461 0.94776 0.99708 0.95712 1.24352 0.99181 0.98206 1.00668 1.96590 1.81868 1.61412 1.61813 1.21301 1.00106 0.87838 0.94681 0.94835 0.97211 0.89293 0.93020 0.92582 0.89375 0.91089 0.88145 0.87399 0.89084 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.51 37.16 0.32 -3.05 15 2 C 0.20 4.97 1.39 -68.86 -0.10 4.88 15 3 H 0.01 0.30 5.65 -51.93 -0.29 0.01 15 4 C -0.50 -13.21 7.97 -34.44 -0.27 -13.48 15 5 H 0.06 1.65 6.74 -52.49 -0.35 1.29 15 6 C 0.06 1.58 5.28 -17.82 -0.09 1.49 15 7 N -0.89 -24.97 11.29 55.43 0.63 -24.34 15 8 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 15 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 12 N -0.52 -10.80 4.88 -229.51 -1.12 -11.92 15 13 C 0.06 1.13 5.66 -3.59 -0.02 1.11 15 14 C -0.12 -2.15 5.53 -28.03 -0.15 -2.30 15 15 C -0.11 -1.80 8.95 -35.92 -0.32 -2.13 15 16 C -0.14 -2.51 5.81 -36.00 -0.21 -2.72 15 17 Br -0.10 -1.55 33.52 -68.01 -2.28 -3.83 15 18 C 0.09 1.66 5.49 -5.28 -0.03 1.63 15 19 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.01 0.20 6.49 -51.93 -0.34 -0.13 15 21 H 0.09 2.39 5.92 -51.93 -0.31 2.08 15 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 23 H 0.06 0.91 8.08 -51.93 -0.42 0.49 15 24 H 0.09 1.70 6.71 -51.93 -0.35 1.35 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.60 15 26 H 0.10 2.04 6.89 -51.93 -0.36 1.68 15 27 H 0.11 1.68 7.95 -52.49 -0.42 1.26 15 28 H 0.09 1.74 5.75 -51.93 -0.30 1.44 15 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 LS Contribution 248.03 15.07 3.74 3.74 Total: -1.00 -27.06 248.03 -8.48 -35.53 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.54 Total: -0.45 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.88 Total: -14.56 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.49 Total: -36.26 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -2.28 Total: -3.83 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -27.06 -8.48 -35.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281691894.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.483 kcal (2) G-P(sol) polarization free energy of solvation -27.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds