Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47377 * 2 1 4 4 C 1.50705 * 109.46853 * 239.99829 * 2 1 3 5 5 H 1.08001 * 119.99920 * 240.00318 * 4 2 1 6 6 C 1.37876 * 119.99950 * 59.99981 * 4 2 1 7 7 N 1.31515 * 120.00225 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47510 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47370 * 120.00362 * 8 6 4 11 11 H 1.48501 * 109.47209 * 240.00334 * 8 6 4 12 12 N 1.46901 * 109.46976 * 120.00254 * 2 1 3 13 13 C 1.47242 * 110.99923 * 180.75546 * 12 2 1 14 14 C 1.53086 * 108.47521 * 54.54542 * 13 12 2 15 15 C 1.50310 * 109.71456 * 48.99681 * 14 13 12 16 16 C 1.29954 * 122.87378 * 343.46640 * 15 14 13 17 17 Br 1.89107 * 118.36704 * 180.38848 * 16 15 14 18 18 C 1.46841 * 110.99644 * 303.68853 * 12 2 1 19 19 H 1.08998 * 109.47535 * 186.75245 * 1 2 3 20 20 H 1.09000 * 109.46798 * 306.75435 * 1 2 3 21 21 H 1.09002 * 109.46769 * 66.74953 * 1 2 3 22 22 H 0.96999 * 120.00309 * 179.97438 * 7 6 4 23 23 H 1.08995 * 109.63484 * 174.23910 * 13 12 2 24 24 H 1.08993 * 109.63376 * 294.85114 * 13 12 2 25 25 H 1.08995 * 109.43243 * 169.05869 * 14 13 12 26 26 H 1.09002 * 109.43081 * 288.90874 * 14 13 12 27 27 H 1.07997 * 118.56048 * 163.47975 * 15 14 13 28 28 H 1.09007 * 109.33907 * 47.80323 * 18 12 2 29 29 H 1.09007 * 109.33958 * 167.31089 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1197 -4.0079 9 1 3.1473 -2.2865 -3.6038 10 1 1.1677 -1.5868 -4.8165 11 1 3.1472 -0.1860 -4.8160 12 7 2.0197 -0.6926 1.1994 13 6 3.4914 -0.6965 1.2426 14 6 3.9841 0.7482 1.1255 15 6 3.2378 1.6187 2.0974 16 6 2.1278 1.2516 2.6648 17 35 1.2894 2.4535 3.8600 18 6 1.4781 -0.0795 2.4189 19 1 -0.3634 -1.0205 0.1208 20 1 -0.3633 0.6149 0.8234 21 1 -0.3633 0.4057 -0.9442 22 1 0.7095 1.1617 -3.4844 23 1 3.8290 -1.1232 2.1870 24 1 3.8806 -1.2847 0.4115 25 1 5.0502 0.7870 1.3489 26 1 3.8137 1.1083 0.1109 27 1 3.6417 2.5919 2.3343 28 1 0.4027 0.0591 2.3063 29 1 1.6680 -0.7361 3.2680 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281691894.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 6.798500 kcal Electronic energy + Delta-G solvation = -12966.126938 eV Core-core repulsion = 10742.103442 eV Total energy + Delta-G solvation = -2224.023496 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55093 -35.75922 -33.83411 -32.75693 -30.59952 -30.10901 -27.17188 -25.42853 -23.80786 -21.90340 -18.72046 -17.87096 -17.35325 -16.49837 -15.94445 -15.60163 -15.21400 -14.58619 -14.05808 -13.52941 -13.31484 -13.06724 -12.91529 -12.59012 -12.46612 -12.24926 -12.10170 -11.88466 -11.56515 -11.43955 -11.18263 -10.83975 -10.45913 -9.74231 -8.91826 -8.07319 -6.18645 0.74379 0.91157 1.42676 1.45941 1.56391 2.44931 3.21010 3.38048 3.86572 4.16733 4.31749 4.34844 4.47036 4.63567 4.77469 4.90608 5.02874 5.05311 5.08017 5.30337 5.34776 5.51090 5.59767 5.77277 5.80764 6.31178 6.39930 6.70405 6.96197 7.50513 8.98252 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.042408 B = 0.006931 C = 0.006566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.089837 B = 4039.124351 C = 4263.364984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.215 3.785 3 H -0.014 1.014 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.529 5.529 13 C 0.060 3.940 14 C -0.118 4.118 15 C -0.107 4.107 16 C -0.156 4.156 17 Br -0.080 7.080 18 C 0.092 3.908 19 H 0.032 0.968 20 H 0.023 0.977 21 H 0.061 0.939 22 H 0.260 0.740 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 2.088 12.031 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.108 3.892 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.251 5.251 13 C -0.068 4.068 14 C -0.158 4.158 15 C -0.128 4.128 16 C -0.236 4.236 17 Br 0.004 6.996 18 C -0.038 4.038 19 H 0.051 0.949 20 H 0.042 0.958 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.099 0.901 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.118 2.108 12.306 12.869 hybrid contribution 0.463 0.540 -1.272 1.457 sum 3.581 2.649 11.035 11.900 Atomic orbital electron populations 1.21748 0.98267 0.98498 1.00219 1.19081 0.91854 0.91488 0.86750 0.99678 1.21409 1.30609 1.12036 0.90762 0.92312 1.25641 0.95490 0.95725 1.01729 1.70027 1.37994 1.24295 1.23798 0.85548 0.78019 0.78707 0.79601 1.18992 1.21095 1.20919 1.62872 1.08200 1.52219 1.01851 1.22154 0.87644 0.94856 1.02138 1.21107 1.00599 0.96337 0.97736 1.22603 0.94759 1.00256 0.95204 1.24296 0.99319 0.98435 1.01579 1.96597 1.81568 1.60524 1.60921 1.21290 0.99409 0.88923 0.94163 0.94923 0.95799 0.92029 0.93124 0.89793 0.90777 0.87856 0.91555 0.85820 0.90096 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.51 71.98 0.61 -5.72 15 2 C 0.21 10.49 1.39 44.17 0.06 10.55 15 3 H -0.01 -0.76 5.65 -2.39 -0.01 -0.78 15 4 C -0.51 -26.97 7.97 25.60 0.20 -26.77 15 5 H 0.06 3.09 6.74 -2.91 -0.02 3.07 15 6 C 0.01 0.67 5.28 84.65 0.45 1.12 15 7 N -0.92 -52.32 11.29 21.45 0.24 -52.08 15 8 Si 0.95 42.86 29.54 68.60 2.03 44.89 15 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 15 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 12 N -0.53 -21.57 4.88 -880.03 -4.30 -25.87 15 13 C 0.06 2.12 5.66 86.27 0.49 2.61 15 14 C -0.12 -3.94 5.53 29.75 0.16 -3.78 15 15 C -0.11 -3.47 8.95 26.61 0.24 -3.23 15 16 C -0.16 -5.15 5.81 26.55 0.15 -5.00 15 17 Br -0.08 -2.31 33.52 -20.37 -0.68 -2.99 15 18 C 0.09 3.21 5.49 85.39 0.47 3.68 15 19 H 0.03 1.54 8.14 -2.39 -0.02 1.52 15 20 H 0.02 1.05 6.49 -2.39 -0.02 1.04 15 21 H 0.06 3.36 5.92 -2.39 -0.01 3.35 15 22 H 0.26 14.09 8.31 -92.71 -0.77 13.32 15 23 H 0.08 2.49 8.08 -2.39 -0.02 2.47 15 24 H 0.07 2.80 6.71 -2.39 -0.02 2.78 15 25 H 0.10 2.72 8.14 -2.39 -0.02 2.70 15 26 H 0.07 2.70 6.89 -2.39 -0.02 2.69 15 27 H 0.12 3.58 7.95 -2.91 -0.02 3.55 15 28 H 0.08 2.98 5.75 -2.38 -0.01 2.97 15 29 H 0.10 2.99 8.14 -2.38 -0.02 2.97 15 Total: -1.00 -56.84 248.03 1.27 -55.57 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.14 Total: 7.03 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 2.84 Total: -26.55 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -4.06 Total: -77.95 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 35 Polarization: -2.31 SS G_CDS: -0.68 Total: -2.99 kcal Total: -56.84 1.27 -55.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281691894.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.370 kcal (2) G-P(sol) polarization free energy of solvation -56.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds