Wall clock time and date at job start Mon Mar 30 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31514 * 120.00035 * 179.72339 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 359.72191 * 6 4 2 9 9 H 1.48500 * 109.46986 * 90.00256 * 8 6 4 10 10 H 1.48496 * 109.47029 * 210.00273 * 8 6 4 11 11 H 1.48499 * 109.47352 * 330.00102 * 8 6 4 12 12 N 1.46904 * 109.47141 * 239.99987 * 2 1 3 13 13 C 1.47239 * 111.00111 * 68.98680 * 12 2 1 14 14 C 1.53071 * 108.49012 * 167.78091 * 13 12 2 15 15 C 1.50306 * 109.72410 * 48.94739 * 14 13 12 16 16 C 1.29960 * 122.87522 * 343.54288 * 15 14 13 17 17 Br 1.89109 * 118.36418 * 180.32503 * 16 15 14 18 18 C 1.46841 * 111.00013 * 306.04765 * 12 2 1 19 19 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 20 20 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 21 21 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 22 22 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 23 23 H 1.09002 * 109.63476 * 287.45967 * 13 12 2 24 24 H 1.09000 * 109.63777 * 48.06727 * 13 12 2 25 25 H 1.09009 * 109.41184 * 288.88195 * 14 13 12 26 26 H 1.08997 * 109.40216 * 169.01093 * 14 13 12 27 27 H 1.07998 * 118.56530 * 163.51658 * 15 14 13 28 28 H 1.09002 * 109.33309 * 294.58176 * 18 12 2 29 29 H 1.08995 * 109.33597 * 54.08776 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1331 -0.8624 3.5565 8 14 0.6317 1.2840 2.6541 9 1 -0.7979 0.8843 2.6967 10 1 0.9840 1.9968 3.9082 11 1 0.8602 2.1818 1.4935 12 7 2.0197 -0.6925 -1.1995 13 6 1.7309 0.0878 -2.4142 14 6 2.5195 -0.5167 -3.5785 15 6 2.3130 -2.0052 -3.6124 16 6 1.8361 -2.6743 -2.6055 17 35 1.6376 -4.5464 -2.7841 18 6 1.4345 -2.0349 -1.3078 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 1.8990 -0.5308 4.4375 23 1 0.6639 0.0437 -2.6329 24 1 2.0345 1.1240 -2.2648 25 1 3.5800 -0.3007 -3.4487 26 1 2.1728 -0.0811 -4.5156 27 1 2.5718 -2.5420 -4.5130 28 1 1.7855 -2.6496 -0.4788 29 1 0.3481 -1.9597 -1.2634 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281691896.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:19 Heat of formation + Delta-G solvation = 10.351077 kcal Electronic energy + Delta-G solvation = -12770.445260 eV Core-core repulsion = 10546.575815 eV Total energy + Delta-G solvation = -2223.869445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.28259 -36.37372 -34.21492 -32.83262 -30.85062 -30.05778 -27.28346 -25.77876 -23.89637 -21.69567 -18.92457 -18.27466 -17.42117 -16.61250 -16.10225 -15.42566 -15.07944 -14.91358 -14.28801 -14.07851 -13.90759 -13.40345 -13.04462 -12.73921 -12.65608 -12.24941 -12.07380 -11.69049 -11.50418 -11.33351 -11.11099 -11.04395 -10.75052 -9.73885 -9.02011 -8.26864 -6.30372 0.74505 0.93856 1.30915 1.36322 1.46644 2.32605 3.06486 3.19580 3.73710 4.11478 4.26204 4.34752 4.43899 4.49896 4.53732 4.63470 4.70937 4.88541 4.96363 5.00166 5.12371 5.29547 5.39647 5.56051 5.62957 6.03782 6.30673 6.66959 6.76057 7.34292 8.90226 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.032861 B = 0.007229 C = 0.006339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.880419 B = 3872.142805 C = 4415.786208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.184 3.816 3 H 0.044 0.956 4 C -0.506 4.506 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.299 1.299 11 H -0.244 1.244 12 N -0.529 5.529 13 C 0.036 3.964 14 C -0.077 4.077 15 C -0.092 4.092 16 C -0.140 4.140 17 Br -0.077 7.077 18 C 0.109 3.891 19 H 0.039 0.961 20 H 0.063 0.937 21 H 0.051 0.949 22 H 0.265 0.735 23 H 0.040 0.960 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.138 0.862 28 H 0.060 0.940 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -1.354 -17.675 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.076 3.924 3 H 0.062 0.938 4 C -0.544 4.544 5 H 0.053 0.947 6 C -0.186 4.186 7 N -0.590 5.590 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.227 1.227 11 H -0.167 1.167 12 N -0.253 5.253 13 C -0.092 4.092 14 C -0.116 4.116 15 C -0.113 4.113 16 C -0.219 4.219 17 Br 0.007 6.993 18 C -0.020 4.020 19 H 0.057 0.943 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.103 0.897 25 H 0.110 0.890 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.078 0.922 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.600 -2.104 -17.512 17.829 hybrid contribution -1.125 0.613 0.963 1.603 sum -3.725 -1.491 -16.549 17.028 Atomic orbital electron populations 1.22718 0.99894 1.01232 1.00318 1.19622 0.90007 0.94632 0.88150 0.93837 1.21174 1.30678 1.12406 0.90153 0.94737 1.25798 0.97421 1.00070 0.95287 1.70047 1.47930 1.42487 0.98578 0.85826 0.78832 0.80023 0.77506 1.19577 1.22708 1.16739 1.62498 1.58348 1.01794 1.02708 1.22418 0.98355 0.98260 0.90130 1.20702 1.01861 0.90271 0.98733 1.22759 0.94000 0.97641 0.96850 1.23272 1.09703 0.89638 0.99328 1.96620 1.97254 1.07633 1.97759 1.20693 0.97021 0.91026 0.93262 0.94260 0.91766 0.92970 0.92585 0.94212 0.89656 0.88995 0.86621 0.84393 0.92195 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.42 7.93 71.98 0.57 -6.85 15 2 C 0.18 8.36 1.91 44.17 0.08 8.45 15 3 H 0.04 1.99 6.98 -2.39 -0.02 1.97 15 4 C -0.51 -28.76 8.62 25.60 0.22 -28.54 15 5 H 0.03 2.23 7.33 -2.92 -0.02 2.21 15 6 C 0.01 0.65 5.45 84.66 0.46 1.11 15 7 N -0.95 -59.65 13.96 21.45 0.30 -59.35 15 8 Si 0.95 44.23 24.38 68.60 1.67 45.91 15 9 H -0.27 -11.99 6.86 99.48 0.68 -11.31 15 10 H -0.30 -13.98 7.11 99.48 0.71 -13.27 15 11 H -0.24 -10.27 6.53 99.48 0.65 -9.62 15 12 N -0.53 -20.97 4.67 -880.10 -4.11 -25.08 15 13 C 0.04 1.05 5.06 86.26 0.44 1.49 15 14 C -0.08 -1.73 6.32 29.75 0.19 -1.55 15 15 C -0.09 -2.31 9.58 26.60 0.25 -2.05 15 16 C -0.14 -4.39 6.24 26.54 0.17 -4.22 15 17 Br -0.08 -2.20 33.52 -20.37 -0.68 -2.89 15 18 C 0.11 4.21 4.74 85.39 0.40 4.61 15 19 H 0.04 1.65 3.29 -2.39 -0.01 1.64 15 20 H 0.06 2.15 6.94 -2.38 -0.02 2.13 15 21 H 0.05 2.15 6.20 -2.39 -0.01 2.13 15 22 H 0.27 15.60 8.31 -92.71 -0.77 14.83 15 23 H 0.04 1.10 7.14 -2.39 -0.02 1.08 15 24 H 0.09 2.33 7.92 -2.39 -0.02 2.31 15 25 H 0.09 2.06 8.14 -2.38 -0.02 2.04 15 26 H 0.12 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.14 2.78 7.95 -2.91 -0.02 2.75 15 28 H 0.06 2.77 7.00 -2.39 -0.02 2.76 15 29 H 0.05 1.83 5.85 -2.39 -0.01 1.82 15 Total: -1.00 -64.78 244.05 1.03 -63.75 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: 1.06 Total: 5.22 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 2.79 Total: -27.55 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -3.81 Total: -84.43 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.67 Total: 45.91 kcal Atomic # 35 Polarization: -2.20 SS G_CDS: -0.68 Total: -2.89 kcal Total: -64.78 1.03 -63.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281691896.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.097 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds