Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47092 * 240.00421 * 3 2 1 5 5 H 1.48496 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46892 * 120.00614 * 3 2 1 7 7 C 1.37873 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47470 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47021 * 185.59791 * 10 9 7 12 12 C 1.47244 * 110.99768 * 183.59544 * 11 10 9 13 13 C 1.53085 * 108.47520 * 54.54530 * 12 11 10 14 14 C 1.50311 * 109.71121 * 49.00534 * 13 12 11 15 15 C 1.29957 * 122.87485 * 343.45256 * 14 13 12 16 16 Br 1.89099 * 118.36556 * 180.39342 * 15 14 13 17 17 C 1.46847 * 111.00185 * 306.52690 * 11 10 9 18 18 H 0.97006 * 120.00027 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47032 * 59.99655 * 9 7 2 20 20 H 1.08999 * 109.47170 * 300.00508 * 9 7 2 21 21 H 1.08996 * 109.46537 * 65.60046 * 10 9 7 22 22 H 1.08991 * 109.47171 * 305.60080 * 10 9 7 23 23 H 1.09004 * 109.63618 * 174.24368 * 12 11 10 24 24 H 1.09001 * 109.63208 * 294.84960 * 12 11 10 25 25 H 1.09010 * 109.42742 * 169.05641 * 13 12 11 26 26 H 1.08996 * 109.43330 * 288.90675 * 13 12 11 27 27 H 1.08004 * 118.55827 * 163.48181 * 14 13 12 28 28 H 1.09002 * 109.33144 * 47.80447 * 17 11 10 29 29 H 1.09003 * 109.33524 * 167.47314 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5158 -4.9298 -0.1369 12 6 2.4339 -6.0781 -0.0563 13 6 3.2353 -5.9682 1.2434 14 6 2.3028 -5.7101 2.3937 15 6 1.0808 -5.2982 2.2324 16 35 0.0217 -5.0033 3.7710 17 6 0.4679 -5.0455 0.8853 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8048 -3.6627 0.9336 22 1 2.9355 -3.5491 -0.8378 23 1 1.8613 -7.0057 -0.0562 24 1 3.1138 -6.0640 -0.9081 25 1 3.7751 -6.8993 1.4165 26 1 3.9473 -5.1469 1.1621 27 1 2.6643 -5.8736 3.3982 28 1 -0.1076 -4.1204 0.9184 29 1 -0.1940 -5.8735 0.6315 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281774281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = 15.784819 kcal Electronic energy + Delta-G solvation = -12553.971127 eV Core-core repulsion = 10330.337307 eV Total energy + Delta-G solvation = -2223.633820 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.34241 -33.86566 -32.65083 -31.52398 -29.38435 -28.93686 -25.41728 -23.71117 -22.19341 -20.52185 -17.09987 -16.62173 -15.88789 -14.90875 -14.54655 -14.31757 -13.91709 -13.47204 -12.55671 -12.22600 -12.09896 -11.78623 -11.34831 -11.28485 -10.88429 -10.59200 -10.54268 -10.43387 -9.99811 -9.86070 -9.36385 -9.12015 -8.61543 -8.31842 -7.82793 -5.98362 -4.00725 1.92446 2.04083 3.34513 3.38957 3.41060 4.36569 4.53491 4.97532 5.08952 5.25754 5.34656 5.37721 5.56038 5.77589 5.92661 6.00074 6.11150 6.26111 6.40956 6.45906 6.66389 6.92581 7.39652 7.46669 7.74112 7.86496 8.04942 8.43198 9.05130 9.62767 11.12995 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.007479 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.756694 B = 3743.097584 C = 4478.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.052 3.948 11 N -0.521 5.521 12 C 0.047 3.953 13 C -0.123 4.123 14 C -0.124 4.124 15 C -0.130 4.130 16 Br -0.082 7.082 17 C 0.086 3.914 18 H 0.261 0.739 19 H 0.025 0.975 20 H 0.019 0.981 21 H 0.028 0.972 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -13.632 5.817 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.074 4.074 11 N -0.243 5.243 12 C -0.082 4.082 13 C -0.163 4.163 14 C -0.145 4.145 15 C -0.211 4.211 16 Br 0.002 6.998 17 C -0.043 4.043 18 H 0.071 0.929 19 H 0.043 0.957 20 H 0.037 0.963 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.476 -13.392 5.876 14.698 hybrid contribution 1.163 0.920 0.681 1.632 sum 2.639 -12.472 6.557 14.335 Atomic orbital electron populations 1.69954 1.05993 1.26706 1.50471 1.24974 0.94824 0.99121 0.95261 0.86670 0.79603 0.83223 0.78570 1.20227 1.21257 1.20318 1.21096 0.92876 0.90954 1.51082 0.92892 1.19173 0.94041 0.90418 0.97672 1.22467 0.97621 0.88228 0.99091 1.62945 1.13461 1.03176 1.44724 1.22306 0.95216 0.94838 0.95819 1.21175 0.98174 1.02609 0.94333 1.22344 0.93743 0.98188 1.00215 1.24295 0.96858 1.05318 0.94612 1.96664 1.70944 1.95888 1.36324 1.21388 0.95156 1.04136 0.83600 0.92924 0.95665 0.96282 0.95346 0.91697 0.90971 0.90172 0.90358 0.89556 0.86903 0.87118 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 15 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 15 8 H 0.05 1.45 7.74 -52.49 -0.41 1.05 15 9 C 0.02 0.62 4.36 -27.89 -0.12 0.50 15 10 C 0.05 1.09 4.45 -3.83 -0.02 1.08 15 11 N -0.52 -9.29 5.13 -236.11 -1.21 -10.50 15 12 C 0.05 0.65 6.06 -3.59 -0.02 0.63 15 13 C -0.12 -1.59 5.52 -28.03 -0.15 -1.74 15 14 C -0.12 -1.79 8.97 -35.92 -0.32 -2.11 15 15 C -0.13 -2.10 5.84 -36.00 -0.21 -2.31 15 16 Br -0.08 -1.28 33.52 -68.01 -2.28 -3.56 15 17 C 0.09 1.49 5.45 -5.28 -0.03 1.47 15 18 H 0.26 7.45 8.31 -40.82 -0.34 7.11 15 19 H 0.02 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.02 0.52 6.41 -51.93 -0.33 0.19 15 21 H 0.03 0.59 5.56 -51.93 -0.29 0.30 15 22 H 0.06 1.34 8.14 -51.93 -0.42 0.92 15 23 H 0.07 0.90 8.08 -51.93 -0.42 0.48 15 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.08 0.80 8.14 -51.92 -0.42 0.38 15 26 H 0.09 1.19 6.86 -51.93 -0.36 0.83 15 27 H 0.11 1.49 7.95 -52.48 -0.42 1.08 15 28 H 0.11 2.23 5.65 -51.93 -0.29 1.94 15 29 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 LS Contribution 255.26 15.07 3.85 3.85 Total: -1.00 -29.56 255.26 -8.98 -38.54 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.76 Total: -2.98 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.29 Total: -15.95 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.47 Total: -36.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 35 Polarization: -1.28 SS G_CDS: -2.28 Total: -3.56 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.56 -8.98 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281774281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.322 kcal (2) G-P(sol) polarization free energy of solvation -29.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds