Wall clock time and date at job start Mon Mar 30 2020 06:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99725 * 2 1 4 4 H 1.48502 * 109.47092 * 240.00421 * 3 2 1 5 5 H 1.48496 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46892 * 120.00614 * 3 2 1 7 7 C 1.37873 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00276 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47470 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47021 * 185.59791 * 10 9 7 12 12 C 1.47244 * 110.99768 * 183.59544 * 11 10 9 13 13 C 1.53085 * 108.47520 * 54.54530 * 12 11 10 14 14 C 1.50311 * 109.71121 * 49.00534 * 13 12 11 15 15 C 1.29957 * 122.87485 * 343.45256 * 14 13 12 16 16 Br 1.89099 * 118.36556 * 180.39342 * 15 14 13 17 17 C 1.46847 * 111.00185 * 306.52690 * 11 10 9 18 18 H 0.97006 * 120.00027 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47032 * 59.99655 * 9 7 2 20 20 H 1.08999 * 109.47170 * 300.00508 * 9 7 2 21 21 H 1.08996 * 109.46537 * 65.60046 * 10 9 7 22 22 H 1.08991 * 109.47171 * 305.60080 * 10 9 7 23 23 H 1.09004 * 109.63618 * 174.24368 * 12 11 10 24 24 H 1.09001 * 109.63208 * 294.84960 * 12 11 10 25 25 H 1.09010 * 109.42742 * 169.05641 * 13 12 11 26 26 H 1.08996 * 109.43330 * 288.90675 * 13 12 11 27 27 H 1.08004 * 118.55827 * 163.48181 * 14 13 12 28 28 H 1.09002 * 109.33144 * 47.80447 * 17 11 10 29 29 H 1.09003 * 109.33524 * 167.47314 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5158 -4.9298 -0.1369 12 6 2.4339 -6.0781 -0.0563 13 6 3.2353 -5.9682 1.2434 14 6 2.3028 -5.7101 2.3937 15 6 1.0808 -5.2982 2.2324 16 35 0.0217 -5.0033 3.7710 17 6 0.4679 -5.0455 0.8853 18 1 -0.4850 0.8401 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8048 -3.6627 0.9336 22 1 2.9355 -3.5491 -0.8378 23 1 1.8613 -7.0057 -0.0562 24 1 3.1138 -6.0640 -0.9081 25 1 3.7751 -6.8993 1.4165 26 1 3.9473 -5.1469 1.1621 27 1 2.6643 -5.8736 3.3982 28 1 -0.1076 -4.1204 0.9184 29 1 -0.1940 -5.8735 0.6315 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281774281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:35 Heat of formation + Delta-G solvation = -3.049797 kcal Electronic energy + Delta-G solvation = -12554.787857 eV Core-core repulsion = 10330.337307 eV Total energy + Delta-G solvation = -2224.450550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.65231 -35.67323 -34.29467 -32.85665 -31.15636 -30.16169 -27.20486 -25.22020 -23.58355 -22.19113 -18.67553 -18.36240 -17.25576 -16.62138 -16.09682 -15.87646 -15.34809 -14.75120 -14.16696 -13.91102 -13.44136 -13.24039 -13.17279 -12.74058 -12.65382 -12.38648 -11.89534 -11.79392 -11.63501 -11.27208 -11.19971 -11.19049 -10.52077 -9.80587 -9.20960 -8.18218 -6.29156 0.72097 0.86117 1.40493 1.43531 1.51255 2.41265 3.10264 3.15376 3.72882 4.00983 4.15738 4.22010 4.35744 4.51461 4.57300 4.69510 4.84748 4.94333 5.01548 5.10616 5.23759 5.43709 5.47641 5.67112 5.80122 6.05611 6.22774 6.30916 6.87302 7.39656 8.93575 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.023728 B = 0.007479 C = 0.006251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.756694 B = 3743.097584 C = 4478.468522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.072 3.928 11 N -0.534 5.534 12 C 0.045 3.955 13 C -0.121 4.121 14 C -0.109 4.109 15 C -0.157 4.157 16 Br -0.085 7.085 17 C 0.092 3.908 18 H 0.263 0.737 19 H -0.008 1.008 20 H -0.005 1.005 21 H 0.030 0.970 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.071 0.929 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.202 -14.398 6.016 16.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.055 4.055 11 N -0.256 5.256 12 C -0.082 4.082 13 C -0.160 4.160 14 C -0.130 4.130 15 C -0.238 4.238 16 Br -0.001 7.001 17 C -0.037 4.037 18 H 0.072 0.928 19 H 0.010 0.990 20 H 0.013 0.987 21 H 0.048 0.952 22 H 0.085 0.915 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.134 0.866 26 H 0.100 0.900 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.422 -14.180 6.073 15.801 hybrid contribution 0.543 1.088 0.616 1.364 sum 3.965 -13.092 6.689 15.227 Atomic orbital electron populations 1.70101 1.07786 1.27744 1.51411 1.25929 0.95705 1.03208 0.94691 0.85536 0.78309 0.78241 0.79176 1.18998 1.20922 1.19308 1.21566 0.93461 0.92244 1.50863 0.92201 1.18981 0.94285 0.92246 0.94870 1.22060 0.96109 0.88150 0.99174 1.62854 1.14250 1.03223 1.45305 1.22472 0.95094 0.93604 0.97075 1.21237 0.97610 1.04285 0.92912 1.22691 0.92974 0.95628 1.01678 1.24181 0.97831 1.07793 0.93957 1.96644 1.71357 1.96073 1.36017 1.21185 0.95052 1.02771 0.84723 0.92836 0.99002 0.98684 0.95162 0.91490 0.89082 0.88740 0.86585 0.90015 0.85385 0.91048 0.88217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.08 15 2 C 0.00 0.16 5.46 84.65 0.46 0.62 15 3 Si 0.96 44.58 29.54 68.60 2.03 46.60 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 7 C -0.54 -31.11 9.11 25.60 0.23 -30.87 15 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 15 9 C 0.03 1.79 4.36 29.85 0.13 1.92 15 10 C 0.07 3.00 4.45 86.30 0.38 3.38 15 11 N -0.53 -18.61 5.13 -900.93 -4.62 -23.24 15 12 C 0.04 1.11 6.06 86.27 0.52 1.64 15 13 C -0.12 -2.69 5.52 29.75 0.16 -2.53 15 14 C -0.11 -2.88 8.97 26.60 0.24 -2.64 15 15 C -0.16 -4.91 5.84 26.55 0.15 -4.76 15 16 Br -0.08 -2.61 33.52 -20.37 -0.68 -3.29 15 17 C 0.09 3.19 5.45 85.39 0.47 3.66 15 18 H 0.26 15.28 8.31 -92.70 -0.77 14.51 15 19 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 15 20 H -0.01 -0.29 6.41 -2.39 -0.02 -0.31 15 21 H 0.03 1.23 5.56 -2.39 -0.01 1.22 15 22 H 0.07 2.72 8.14 -2.39 -0.02 2.70 15 23 H 0.09 1.95 8.08 -2.38 -0.02 1.93 15 24 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.12 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.08 1.98 6.86 -2.39 -0.02 1.97 15 27 H 0.13 3.01 7.95 -2.91 -0.02 2.98 15 28 H 0.07 3.03 5.65 -2.39 -0.01 3.02 15 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 Total: -1.00 -64.28 255.26 0.89 -63.39 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.13 Total: 3.20 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 2.75 Total: -29.59 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -4.34 Total: -80.31 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 35 Polarization: -2.61 SS G_CDS: -0.68 Total: -3.29 kcal Total: -64.28 0.89 -63.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281774281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.343 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds