Wall clock time and date at job start Mon Mar 30 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33334 * 122.70284 * 2 1 4 4 S 1.76169 * 108.09980 * 179.74593 * 3 2 1 5 5 C 1.70960 * 90.35978 * 0.30499 * 4 3 2 6 6 S 1.76205 * 124.95570 * 179.97438 * 5 4 3 7 7 C 1.81000 * 99.99610 * 359.69076 * 6 5 4 8 8 C 1.53002 * 109.46989 * 179.97438 * 7 6 5 9 9 O 1.42905 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.42899 * 113.99778 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47163 * 180.02562 * 10 9 8 12 12 H 1.08003 * 120.00089 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00281 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99721 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00202 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46771 * 60.00258 * 15 13 11 17 17 H 1.48496 * 109.47257 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47291 * 300.00382 * 15 13 11 19 19 N 1.29760 * 110.09267 * 359.69052 * 5 4 3 20 20 H 1.09000 * 109.46727 * 269.99922 * 1 2 3 21 21 H 1.09001 * 109.47119 * 29.99453 * 1 2 3 22 22 H 1.08994 * 109.47234 * 149.99696 * 1 2 3 23 23 H 1.07993 * 125.95454 * 359.97438 * 3 2 1 24 24 H 1.09004 * 109.47116 * 60.00281 * 7 6 5 25 25 H 1.09004 * 109.47713 * 300.00165 * 7 6 5 26 26 H 1.09004 * 109.46930 * 60.00206 * 8 7 6 27 27 H 1.09000 * 109.47312 * 300.00150 * 8 7 6 28 28 H 1.08997 * 109.47442 * 300.00036 * 10 9 8 29 29 H 1.08997 * 109.47171 * 60.00232 * 10 9 8 30 30 H 0.97007 * 119.99648 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2274 1.1220 0.0000 4 16 3.9322 0.6778 0.0074 5 6 3.5116 -0.9792 0.0007 6 16 4.6630 -2.3130 0.0022 7 6 6.2176 -1.3861 0.0025 8 6 7.3944 -2.3639 0.0044 9 8 8.6218 -1.6321 0.0040 10 6 9.7896 -2.4558 0.0052 11 6 11.0190 -1.5843 0.0053 12 1 10.9187 -0.5089 0.0049 13 6 12.2719 -2.1597 0.0068 14 7 12.3941 -3.4691 0.0077 15 14 13.7959 -1.0794 0.0062 16 1 13.7941 -0.2203 1.2176 17 1 15.0094 -1.9353 0.0088 18 1 13.7956 -0.2236 -1.2074 19 7 2.2208 -1.1115 0.0004 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5138 22 1 -0.3633 -0.8899 -0.5138 23 1 1.8344 2.1279 -0.0004 24 1 6.2661 -0.7581 0.8922 25 1 6.2671 -0.7592 -0.8879 26 1 7.3461 -2.9922 -0.8850 27 1 7.3448 -2.9904 0.8950 28 1 9.7901 -3.0842 0.8957 29 1 9.7906 -3.0859 -0.8842 30 1 13.2757 -3.8740 0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292731041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:12 Heat of formation + Delta-G solvation = -13.419476 kcal Electronic energy + Delta-G solvation = -13910.792834 eV Core-core repulsion = 11345.116884 eV Total energy + Delta-G solvation = -2565.675950 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.83670 -37.00487 -32.94409 -32.22766 -31.19457 -27.92108 -27.15371 -25.50471 -22.84196 -22.31166 -19.81507 -18.69446 -16.85334 -16.45452 -15.98516 -15.72616 -15.12467 -14.85349 -14.41660 -13.77792 -13.51621 -13.41197 -13.29662 -12.87019 -12.74651 -12.10506 -11.51944 -11.33043 -11.12388 -10.89217 -10.81463 -10.69979 -10.14749 -10.02854 -9.74578 -9.32508 -9.22024 -8.96368 -8.30156 -7.72659 -6.17168 -4.19905 0.39781 0.87766 0.93496 1.51695 2.21622 2.49997 3.28749 3.31805 3.35293 4.22642 4.28818 4.64031 4.88787 4.90133 5.00753 5.19389 5.30445 5.40545 5.45544 5.50782 5.54003 5.91750 5.95016 5.97703 6.97644 7.31908 7.40369 7.70837 8.04609 8.41096 8.91297 9.45020 10.94178 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.056683 B = 0.003314 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.853907 B = 8447.436437 C = 8910.236661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.078 3.922 3 C -0.271 4.271 4 S 0.144 5.856 5 C 0.023 3.977 6 S 0.027 5.973 7 C -0.132 4.132 8 C 0.082 3.918 9 O -0.391 6.391 10 C 0.196 3.804 11 C -0.519 4.519 12 H 0.067 0.933 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.910 3.090 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.460 5.460 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.178 0.822 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.605 7.049 -0.003 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.414 4.414 4 S 0.395 5.605 5 C -0.363 4.363 6 S 0.260 5.740 7 C -0.281 4.281 8 C 0.003 3.997 9 O -0.311 6.311 10 C 0.122 3.878 11 C -0.557 4.557 12 H 0.085 0.915 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.737 3.263 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 N -0.179 5.179 20 H 0.095 0.905 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.195 0.805 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.827 5.876 0.005 20.680 hybrid contribution 0.083 1.575 0.005 1.577 sum -19.744 7.451 0.010 21.103 Atomic orbital electron populations 1.20364 0.86868 1.03419 1.03051 1.20365 0.98278 0.86239 1.00757 1.26715 0.95197 1.03967 1.15524 1.84310 1.07316 1.00240 1.68680 1.28545 0.98897 1.01312 1.07533 1.85692 0.94157 1.03902 1.90287 1.23845 0.94223 1.02498 1.07554 1.21709 0.84809 0.92300 1.00881 1.87859 1.12923 1.34991 1.95331 1.20281 0.80831 0.90907 0.95803 1.20989 0.89295 0.93963 1.51494 0.91485 1.24952 0.99198 0.95286 0.94973 1.69950 1.24283 1.09291 1.50068 0.86364 0.81107 0.79940 0.78887 1.19958 1.21085 1.19950 1.66484 1.02483 1.30994 1.17980 0.90525 0.90618 0.90472 0.80471 0.87999 0.87980 0.93014 0.93009 0.97320 0.97315 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.31 36.01 0.37 -0.22 16 2 C 0.08 0.89 6.74 -84.19 -0.57 0.32 16 3 C -0.27 -2.73 11.10 29.02 0.32 -2.41 16 4 S 0.14 1.65 21.54 -107.50 -2.32 -0.66 16 5 C 0.02 0.32 7.59 51.89 0.39 0.71 16 6 S 0.03 0.37 22.31 -107.50 -2.40 -2.03 16 7 C -0.13 -1.89 5.00 37.16 0.19 -1.71 16 8 C 0.08 1.45 5.94 37.16 0.22 1.67 16 9 O -0.39 -9.05 10.33 -35.23 -0.36 -9.41 16 10 C 0.20 5.24 5.69 36.00 0.20 5.44 16 11 C -0.52 -14.98 9.43 -34.44 -0.32 -15.31 16 12 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.46 -6.47 10.59 -10.94 -0.12 -6.59 16 20 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 24 H 0.10 1.41 7.97 -51.91 -0.41 1.00 16 25 H 0.10 1.41 7.98 -51.91 -0.41 1.00 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -31.32 293.27 -8.10 -39.42 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -3.75 Total: -5.94 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 0.71 Total: -9.96 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.62 Total: -32.28 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.36 Total: -9.41 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -4.71 Total: -2.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.32 -8.10 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292731041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.002 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds