Wall clock time and date at job start Mon Mar 30 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31129 * 1 3 3 Br 1.89107 * 119.99870 * 2 1 4 4 C 1.50702 * 120.00462 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47056 * 114.99717 * 4 2 1 6 6 C 1.47904 * 111.00054 * 69.88104 * 5 4 2 7 7 C 1.53995 * 107.05974 * 145.84166 * 6 5 4 8 8 C 1.54603 * 105.14000 * 358.77299 * 7 6 5 9 9 H 1.09000 * 110.72105 * 96.57841 * 8 7 6 10 10 C 1.50695 * 110.72429 * 219.68782 * 8 7 6 11 11 H 1.07995 * 120.00496 * 118.54590 * 10 8 7 12 12 C 1.37880 * 119.99572 * 298.54523 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.48539 * 110.99804 * 187.27402 * 5 4 2 19 19 H 1.07997 * 119.99505 * 179.97438 * 1 2 3 20 20 H 1.07998 * 120.00074 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46546 * 354.99757 * 4 2 1 22 22 H 1.08990 * 109.47254 * 235.00247 * 4 2 1 23 23 H 1.08993 * 109.91739 * 26.48681 * 6 5 4 24 24 H 1.09002 * 109.91011 * 265.19066 * 6 5 4 25 25 H 1.08996 * 110.30427 * 239.85691 * 7 6 5 26 26 H 1.09000 * 110.30899 * 117.68338 * 7 6 5 27 27 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 28 28 H 1.09002 * 110.66679 * 81.84200 * 18 5 4 29 29 H 1.08997 * 110.66367 * 318.71520 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0649 -1.3051 -0.0006 5 7 2.8166 -1.4359 -1.2559 6 6 3.9394 -0.4744 -1.3040 7 6 5.0895 -1.1605 -2.0642 8 6 4.5594 -2.5708 -2.4112 9 1 4.1609 -2.5941 -3.4255 10 6 5.6429 -3.6043 -2.2420 11 1 5.5206 -4.4026 -1.5250 12 6 6.7905 -3.5308 -3.0028 13 7 6.9397 -2.5585 -3.8756 14 14 8.1334 -4.8123 -2.7937 15 1 7.5854 -6.1582 -3.1001 16 1 8.6286 -4.7865 -1.3939 17 1 9.2535 -4.5116 -3.7211 18 6 3.4319 -2.7830 -1.3699 19 1 -0.5399 -0.9353 -0.0004 20 1 -0.5400 0.9353 0.0004 21 1 1.3599 -2.1317 0.0887 22 1 2.7570 -1.3254 0.8412 23 1 4.2592 -0.2261 -0.2920 24 1 3.6324 0.4288 -1.8314 25 1 5.9721 -1.2339 -1.4288 26 1 5.3228 -0.6094 -2.9751 27 1 6.2422 -1.8932 -3.9845 28 1 2.7043 -3.5088 -1.7332 29 1 3.8467 -3.0987 -0.4127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306961475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:35 Heat of formation + Delta-G solvation = 20.596353 kcal Electronic energy + Delta-G solvation = -12493.331522 eV Core-core repulsion = 10269.906346 eV Total energy + Delta-G solvation = -2223.425176 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.41663 -35.11958 -32.96504 -30.33701 -29.44311 -28.21795 -25.35235 -23.69870 -20.53735 -19.98309 -18.87951 -16.87015 -15.75738 -15.12111 -14.52259 -14.06181 -13.71123 -13.06667 -12.74187 -12.08523 -11.80550 -11.70638 -11.22144 -11.07287 -10.90543 -10.66190 -10.50047 -10.09096 -9.87812 -9.61386 -9.45062 -8.97649 -8.47002 -8.32119 -7.89862 -6.31485 -4.04336 1.75160 1.86150 3.44379 3.45765 3.64679 4.49169 4.60563 4.81329 5.33189 5.40793 5.47981 5.61878 5.73949 5.96381 6.00925 6.13400 6.23646 6.31176 6.44476 6.67484 6.94086 6.96931 7.28391 7.42902 7.54849 7.71521 8.26922 8.44484 8.90697 9.68296 11.06910 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.052302 B = 0.005658 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.221190 B = 4947.784078 C = 5273.766508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 Br -0.070 7.070 4 C 0.084 3.916 5 N -0.518 5.518 6 C 0.033 3.967 7 C -0.121 4.121 8 C 0.038 3.962 9 H 0.028 0.972 10 C -0.597 4.597 11 H 0.048 0.952 12 C 0.021 3.979 13 N -0.911 5.911 14 Si 1.067 2.933 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.283 1.283 18 C 0.049 3.951 19 H 0.120 0.880 20 H 0.109 0.891 21 H 0.087 0.913 22 H 0.047 0.953 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.273 0.727 28 H 0.065 0.935 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.656 7.411 9.145 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.180 4.180 3 Br 0.013 6.987 4 C -0.046 4.046 5 N -0.242 5.242 6 C -0.095 4.095 7 C -0.160 4.160 8 C 0.018 3.982 9 H 0.046 0.954 10 C -0.636 4.636 11 H 0.067 0.933 12 C -0.184 4.184 13 N -0.548 5.548 14 Si 0.895 3.105 15 H -0.215 1.215 16 H -0.216 1.216 17 H -0.208 1.208 18 C -0.078 4.078 19 H 0.138 0.862 20 H 0.127 0.873 21 H 0.105 0.895 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -10.175 7.636 8.174 15.121 hybrid contribution -1.247 0.016 1.299 1.801 sum -11.422 7.653 9.473 16.696 Atomic orbital electron populations 1.24021 0.93836 1.03283 0.97541 1.24122 0.96137 0.92385 1.05374 1.96672 1.77582 1.26922 1.97486 1.21339 0.97637 0.92475 0.93100 1.64854 1.23073 1.05760 1.30467 1.23180 0.91273 0.95894 0.99144 1.22651 0.96210 0.98338 0.98838 1.19685 0.92289 0.92419 0.93762 0.95398 1.21917 1.03905 1.12468 1.25285 0.93343 1.25759 0.99426 1.00015 0.93181 1.70777 1.36908 1.13664 1.33406 0.83575 0.75883 0.75006 0.75999 1.21492 1.21575 1.20806 1.23270 0.96591 0.88399 0.99545 0.86238 0.87290 0.89506 0.93478 0.94544 0.91103 0.92171 0.92806 0.91461 0.91660 0.94407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 14.00 28.98 0.41 -1.19 15 2 C -0.10 -1.38 5.91 -36.06 -0.21 -1.59 15 3 Br -0.07 -0.97 30.21 -68.01 -2.05 -3.03 15 4 C 0.08 1.29 5.14 -4.98 -0.03 1.27 15 5 N -0.52 -9.86 5.26 -231.89 -1.22 -11.08 15 6 C 0.03 0.65 4.90 -2.75 -0.01 0.64 15 7 C -0.12 -2.87 5.34 -25.37 -0.14 -3.01 15 8 C 0.04 0.95 2.62 -89.91 -0.24 0.71 15 9 H 0.03 0.77 8.08 -51.93 -0.42 0.35 15 10 C -0.60 -16.67 8.42 -34.44 -0.29 -16.96 15 11 H 0.05 1.34 7.78 -52.49 -0.41 0.93 15 12 C 0.02 0.60 5.33 -17.82 -0.10 0.50 15 13 N -0.91 -27.34 13.42 55.43 0.74 -26.60 15 14 Si 1.07 25.08 29.90 -169.99 -5.08 20.00 15 15 H -0.29 -6.49 7.11 56.52 0.40 -6.09 15 16 H -0.29 -6.52 7.11 56.52 0.40 -6.11 15 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 18 C 0.05 1.03 5.95 -1.89 -0.01 1.02 15 19 H 0.12 1.11 7.84 -52.49 -0.41 0.70 15 20 H 0.11 1.04 8.05 -52.49 -0.42 0.62 15 21 H 0.09 1.18 7.77 -51.93 -0.40 0.78 15 22 H 0.05 0.74 7.81 -51.93 -0.41 0.33 15 23 H 0.04 0.69 6.97 -51.93 -0.36 0.33 15 24 H 0.07 1.36 6.90 -51.93 -0.36 1.00 15 25 H 0.06 1.52 7.84 -51.93 -0.41 1.11 15 26 H 0.05 1.31 6.97 -51.93 -0.36 0.94 15 27 H 0.27 8.14 5.53 -40.82 -0.23 7.91 15 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 29 H 0.04 0.81 7.92 -51.93 -0.41 0.40 15 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -29.45 255.34 -8.19 -37.65 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.82 Total: -2.18 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.61 Total: -18.61 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.47 Total: -37.67 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.08 Total: 20.00 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -2.05 Total: -3.03 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.45 -8.19 -37.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.243 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds