Wall clock time and date at job start Mon Mar 30 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31129 * 1 3 3 Br 1.89107 * 119.99870 * 2 1 4 4 C 1.50702 * 120.00462 * 180.02562 * 2 1 3 5 5 N 1.46896 * 109.47056 * 114.99717 * 4 2 1 6 6 C 1.47904 * 111.00054 * 69.88104 * 5 4 2 7 7 C 1.53995 * 107.05974 * 145.84166 * 6 5 4 8 8 C 1.54603 * 105.14000 * 358.77299 * 7 6 5 9 9 H 1.09000 * 110.72105 * 96.57841 * 8 7 6 10 10 C 1.50695 * 110.72429 * 219.68782 * 8 7 6 11 11 H 1.07995 * 120.00496 * 118.54590 * 10 8 7 12 12 C 1.37880 * 119.99572 * 298.54523 * 10 8 7 13 13 N 1.31511 * 120.00327 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99951 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47297 * 59.99744 * 14 12 10 16 16 H 1.48503 * 109.47261 * 299.99924 * 14 12 10 17 17 H 1.48500 * 109.47454 * 179.97438 * 14 12 10 18 18 C 1.48539 * 110.99804 * 187.27402 * 5 4 2 19 19 H 1.07997 * 119.99505 * 179.97438 * 1 2 3 20 20 H 1.07998 * 120.00074 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.46546 * 354.99757 * 4 2 1 22 22 H 1.08990 * 109.47254 * 235.00247 * 4 2 1 23 23 H 1.08993 * 109.91739 * 26.48681 * 6 5 4 24 24 H 1.09002 * 109.91011 * 265.19066 * 6 5 4 25 25 H 1.08996 * 110.30427 * 239.85691 * 7 6 5 26 26 H 1.09000 * 110.30899 * 117.68338 * 7 6 5 27 27 H 0.97006 * 119.99995 * 359.97438 * 13 12 10 28 28 H 1.09002 * 110.66679 * 81.84200 * 18 5 4 29 29 H 1.08997 * 110.66367 * 318.71520 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2568 1.6377 0.0000 4 6 2.0649 -1.3051 -0.0006 5 7 2.8166 -1.4359 -1.2559 6 6 3.9394 -0.4744 -1.3040 7 6 5.0895 -1.1605 -2.0642 8 6 4.5594 -2.5708 -2.4112 9 1 4.1609 -2.5941 -3.4255 10 6 5.6429 -3.6043 -2.2420 11 1 5.5206 -4.4026 -1.5250 12 6 6.7905 -3.5308 -3.0028 13 7 6.9397 -2.5585 -3.8756 14 14 8.1334 -4.8123 -2.7937 15 1 7.5854 -6.1582 -3.1001 16 1 8.6286 -4.7865 -1.3939 17 1 9.2535 -4.5116 -3.7211 18 6 3.4319 -2.7830 -1.3699 19 1 -0.5399 -0.9353 -0.0004 20 1 -0.5400 0.9353 0.0004 21 1 1.3599 -2.1317 0.0887 22 1 2.7570 -1.3254 0.8412 23 1 4.2592 -0.2261 -0.2920 24 1 3.6324 0.4288 -1.8314 25 1 5.9721 -1.2339 -1.4288 26 1 5.3228 -0.6094 -2.9751 27 1 6.2422 -1.8932 -3.9845 28 1 2.7043 -3.5088 -1.7332 29 1 3.8467 -3.0987 -0.4127 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306961475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:35 Heat of formation + Delta-G solvation = 1.904593 kcal Electronic energy + Delta-G solvation = -12494.142058 eV Core-core repulsion = 10269.906346 eV Total energy + Delta-G solvation = -2224.235712 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.03377 -36.51573 -34.73910 -31.81432 -30.72433 -29.97074 -26.92429 -25.58279 -22.11886 -21.78277 -20.12029 -18.88063 -17.19583 -16.59837 -16.03377 -15.68304 -15.24127 -14.73840 -14.33403 -13.69688 -13.60299 -13.29959 -12.81800 -12.46654 -12.23513 -12.18535 -12.09466 -11.93721 -11.72910 -11.36318 -10.86895 -10.56881 -10.44056 -10.00480 -9.42386 -8.57636 -6.31537 0.78754 0.91309 1.53994 1.61742 1.80771 2.58564 3.14141 3.22652 3.64640 3.94377 4.09018 4.30423 4.32946 4.46467 4.56332 4.69576 4.75171 4.85091 5.05280 5.11364 5.15622 5.29828 5.34774 5.60131 5.75902 6.07702 6.15379 6.23882 6.66387 7.49940 8.81040 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.052302 B = 0.005658 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.221190 B = 4947.784078 C = 5273.766508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 Br -0.083 7.083 4 C 0.085 3.915 5 N -0.520 5.520 6 C 0.049 3.951 7 C -0.114 4.114 8 C 0.025 3.975 9 H -0.002 1.002 10 C -0.610 4.610 11 H 0.048 0.952 12 C -0.030 4.030 13 N -0.938 5.938 14 Si 1.114 2.886 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.286 1.286 18 C 0.062 3.938 19 H 0.143 0.857 20 H 0.126 0.874 21 H 0.109 0.891 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.036 0.964 27 H 0.262 0.738 28 H 0.076 0.924 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.076 6.960 10.392 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.216 4.216 3 Br 0.000 7.000 4 C -0.043 4.043 5 N -0.244 5.244 6 C -0.079 4.079 7 C -0.153 4.153 8 C 0.006 3.994 9 H 0.016 0.984 10 C -0.648 4.648 11 H 0.067 0.933 12 C -0.228 4.228 13 N -0.575 5.575 14 Si 0.936 3.064 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.212 1.212 18 C -0.066 4.066 19 H 0.160 0.840 20 H 0.144 0.856 21 H 0.127 0.873 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.629 7.191 9.441 16.615 hybrid contribution -0.928 0.169 0.917 1.316 sum -12.556 7.360 10.358 17.864 Atomic orbital electron populations 1.24394 0.92854 1.05170 0.92671 1.23984 0.96814 0.91157 1.09627 1.96663 1.78119 1.27495 1.97682 1.21409 0.97616 0.94524 0.90797 1.64827 1.22222 1.03996 1.33394 1.23007 0.90143 0.95837 0.98893 1.22457 0.96886 0.97873 0.98107 1.19673 0.93367 0.92854 0.93521 0.98383 1.22292 1.04655 1.12930 1.24903 0.93327 1.27205 1.02022 1.01090 0.92520 1.70890 1.36946 1.14624 1.35045 0.82975 0.73312 0.73433 0.76720 1.19548 1.19746 1.21173 1.23033 0.95505 0.90056 0.97973 0.83977 0.85640 0.87310 0.93879 0.93720 0.90348 0.94481 0.94534 0.92695 0.90567 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 14.00 67.65 0.95 -1.03 15 2 C -0.14 -3.34 5.91 25.52 0.15 -3.19 15 3 Br -0.08 -2.17 30.21 -20.37 -0.62 -2.78 15 4 C 0.09 2.40 5.14 85.56 0.44 2.84 15 5 N -0.52 -19.06 5.26 -887.56 -4.66 -23.73 15 6 C 0.05 1.93 4.90 86.45 0.42 2.35 15 7 C -0.11 -5.55 5.34 31.48 0.17 -5.38 15 8 C 0.02 1.29 2.62 -10.33 -0.03 1.26 15 9 H 0.00 -0.11 8.08 -2.39 -0.02 -0.13 15 10 C -0.61 -34.41 8.42 25.60 0.22 -34.19 15 11 H 0.05 2.68 7.78 -2.91 -0.02 2.65 15 12 C -0.03 -1.71 5.33 84.66 0.45 -1.26 15 13 N -0.94 -57.67 13.42 21.45 0.29 -57.38 15 14 Si 1.11 50.31 29.90 68.60 2.05 52.36 15 15 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 17 H -0.29 -13.01 7.11 99.48 0.71 -12.31 15 18 C 0.06 2.56 5.95 86.65 0.52 3.08 15 19 H 0.14 1.91 7.84 -2.91 -0.02 1.89 15 20 H 0.13 1.86 8.05 -2.91 -0.02 1.83 15 21 H 0.11 2.57 7.77 -2.38 -0.02 2.55 15 22 H 0.04 1.25 7.81 -2.39 -0.02 1.24 15 23 H 0.04 1.67 6.97 -2.39 -0.02 1.66 15 24 H 0.08 2.97 6.90 -2.39 -0.02 2.95 15 25 H 0.04 1.92 7.84 -2.39 -0.02 1.90 15 26 H 0.04 1.85 6.97 -2.39 -0.02 1.83 15 27 H 0.26 16.26 5.53 -92.70 -0.51 15.74 15 28 H 0.08 2.99 8.14 -2.39 -0.02 2.97 15 29 H 0.04 1.53 7.92 -2.39 -0.02 1.51 15 Total: -1.00 -63.87 255.34 1.72 -62.15 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.38 Total: 4.90 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.29 Total: -35.52 kcal Atomic # 7 Polarization: -76.73 SS G_CDS: -4.38 Total: -81.11 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.36 kcal Atomic # 35 Polarization: -2.17 SS G_CDS: -0.62 Total: -2.78 kcal Total: -63.87 1.72 -62.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.056 kcal (2) G-P(sol) polarization free energy of solvation -63.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds