Wall clock time and date at job start Mon Mar 30 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31122 * 1 3 3 Br 1.89105 * 119.99931 * 2 1 4 4 C 1.50705 * 120.00363 * 179.97438 * 2 1 3 5 5 N 1.46901 * 109.46826 * 115.00343 * 4 2 1 6 6 C 1.48561 * 110.99850 * 290.12674 * 5 4 2 7 7 C 1.54388 * 104.59127 * 200.96193 * 6 5 4 8 8 C 1.54258 * 105.06039 * 23.85568 * 7 6 5 9 9 H 1.08999 * 110.32591 * 241.00109 * 8 7 6 10 10 C 1.50700 * 110.32481 * 118.89567 * 8 7 6 11 11 H 1.08007 * 119.99995 * 275.28033 * 10 8 7 12 12 C 1.37873 * 120.00119 * 95.55645 * 10 8 7 13 13 N 1.31512 * 120.00114 * 185.51619 * 12 10 8 14 14 Si 1.86807 * 119.99788 * 5.50938 * 12 10 8 15 15 H 1.48503 * 109.46796 * 85.78383 * 14 12 10 16 16 H 1.48498 * 109.47008 * 205.77995 * 14 12 10 17 17 H 1.48497 * 109.47106 * 325.78224 * 14 12 10 18 18 C 1.48562 * 110.99639 * 174.71009 * 5 4 2 19 19 H 1.08004 * 119.99990 * 179.97438 * 1 2 3 20 20 H 1.08000 * 120.00453 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46753 * 355.00352 * 4 2 1 22 22 H 1.08997 * 109.47044 * 235.00978 * 4 2 1 23 23 H 1.08996 * 110.41034 * 82.18742 * 6 5 4 24 24 H 1.09001 * 110.41193 * 319.73878 * 6 5 4 25 25 H 1.09003 * 110.32163 * 264.95896 * 7 6 5 26 26 H 1.08997 * 110.31995 * 142.75125 * 7 6 5 27 27 H 0.97001 * 120.00044 * 180.02562 * 13 12 10 28 28 H 1.09003 * 110.41084 * 40.26373 * 18 5 4 29 29 H 1.09003 * 110.41303 * 277.81929 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 0.0006 5 7 2.8166 -1.4369 -1.2546 6 6 1.9002 -1.6519 -2.4039 7 6 2.7865 -2.2932 -3.4934 8 6 3.9520 -2.9508 -2.7261 9 1 4.9017 -2.5105 -3.0302 10 6 3.9645 -4.4382 -2.9675 11 1 3.3445 -5.0879 -2.3675 12 6 4.7718 -4.9704 -3.9504 13 7 4.7033 -6.2525 -4.2349 14 14 5.9627 -3.8700 -4.8781 15 1 7.2326 -3.7616 -4.1160 16 1 6.2366 -4.4539 -6.2158 17 1 5.3657 -2.5200 -5.0401 18 6 3.6720 -2.6514 -1.2377 19 1 -0.5400 -0.9353 -0.0004 20 1 -0.5401 0.9353 -0.0004 21 1 1.3599 -2.1316 0.0905 22 1 2.7568 -1.3247 0.8425 23 1 1.4980 -0.7007 -2.7525 24 1 1.0921 -2.3280 -2.1246 25 1 3.1638 -1.5289 -4.1728 26 1 2.2234 -3.0463 -4.0445 27 1 5.2715 -6.6269 -4.9262 28 1 3.1412 -3.4839 -0.7758 29 1 4.6038 -2.4528 -0.7080 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306961476.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:37 Heat of formation + Delta-G solvation = 21.491650 kcal Electronic energy + Delta-G solvation = -12418.611125 eV Core-core repulsion = 10195.224772 eV Total energy + Delta-G solvation = -2223.386353 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.42538 -35.03596 -32.68628 -30.77834 -29.57481 -28.37520 -25.83241 -23.65191 -20.57489 -19.59130 -18.96928 -16.99669 -15.71279 -15.02216 -14.86039 -13.97313 -13.89666 -13.37482 -12.55629 -12.22475 -11.86821 -11.63039 -11.21213 -11.12420 -10.83995 -10.72798 -10.42737 -10.30638 -10.00158 -9.70163 -9.59264 -9.04320 -8.96213 -8.53044 -7.98445 -6.09731 -4.08692 1.77659 1.87534 3.30540 3.38712 3.42864 4.42449 4.50354 4.79021 5.20277 5.38939 5.49176 5.56353 5.70667 5.86459 6.00615 6.09471 6.16164 6.23871 6.35112 6.64004 6.78221 6.83970 7.09853 7.36319 7.37265 7.54694 7.82606 8.50975 8.93791 9.53781 11.03256 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.047318 B = 0.005657 C = 0.005357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.603205 B = 4948.132243 C = 5225.665619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.096 4.096 3 Br -0.065 7.065 4 C 0.081 3.919 5 N -0.510 5.510 6 C 0.039 3.961 7 C -0.123 4.123 8 C 0.015 3.985 9 H 0.039 0.961 10 C -0.511 4.511 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.901 5.901 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.263 1.263 18 C 0.046 3.954 19 H 0.117 0.883 20 H 0.110 0.890 21 H 0.051 0.949 22 H 0.085 0.915 23 H 0.063 0.937 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.264 0.736 28 H 0.042 0.958 29 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 14.975 8.846 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.176 4.176 3 Br 0.019 6.981 4 C -0.049 4.049 5 N -0.233 5.233 6 C -0.089 4.089 7 C -0.162 4.162 8 C -0.005 4.005 9 H 0.058 0.942 10 C -0.549 4.549 11 H 0.089 0.911 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.706 3.294 15 H -0.202 1.202 16 H -0.217 1.217 17 H -0.188 1.188 18 C -0.081 4.081 19 H 0.135 0.865 20 H 0.128 0.872 21 H 0.069 0.931 22 H 0.103 0.897 23 H 0.082 0.918 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.640 15.888 8.679 19.283 hybrid contribution -0.119 -0.655 -0.416 0.786 sum -6.759 15.232 8.262 18.601 Atomic orbital electron populations 1.24082 0.94049 1.03310 0.98253 1.24094 0.95680 0.92926 1.04853 1.96668 1.77874 1.26138 1.97467 1.21344 0.96683 0.91431 0.95402 1.65450 1.17815 1.38973 1.01097 1.23056 0.94701 0.98644 0.92465 1.22704 0.98203 0.98446 0.96840 1.19839 0.94346 0.96437 0.89868 0.94236 1.21025 1.25523 0.89739 1.18604 0.91072 1.25062 0.96803 0.94838 0.96356 1.69912 1.39641 1.12183 1.32113 0.86822 0.81902 0.81483 0.79178 1.20165 1.21675 1.18795 1.23245 0.95874 0.88663 1.00329 0.86455 0.87223 0.93089 0.89664 0.91828 0.94641 0.93503 0.91185 0.92640 0.93937 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 14.00 28.98 0.41 -1.26 15 2 C -0.10 -1.24 5.40 -36.06 -0.19 -1.44 15 3 Br -0.07 -0.85 33.73 -68.01 -2.29 -3.15 15 4 C 0.08 1.18 5.10 -4.97 -0.03 1.15 15 5 N -0.51 -9.02 5.36 -231.40 -1.24 -10.26 15 6 C 0.04 0.70 5.98 -2.18 -0.01 0.69 15 7 C -0.12 -2.60 6.64 -25.35 -0.17 -2.76 15 8 C 0.01 0.34 2.61 -90.39 -0.24 0.11 15 9 H 0.04 0.95 5.41 -51.93 -0.28 0.67 15 10 C -0.51 -14.02 8.63 -34.44 -0.30 -14.32 15 11 H 0.07 2.12 7.90 -52.48 -0.41 1.71 15 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 13 N -0.90 -27.22 13.96 55.43 0.77 -26.45 15 14 Si 0.88 21.52 27.04 -169.99 -4.60 16.93 15 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.29 -7.10 7.11 56.52 0.40 -6.69 15 17 H -0.26 -6.24 6.78 56.52 0.38 -5.86 15 18 C 0.05 0.92 6.02 -2.18 -0.01 0.91 15 19 H 0.12 1.12 7.84 -52.48 -0.41 0.71 15 20 H 0.11 1.02 8.05 -52.49 -0.42 0.60 15 21 H 0.05 0.72 7.53 -51.93 -0.39 0.32 15 22 H 0.09 1.19 8.13 -51.93 -0.42 0.77 15 23 H 0.06 1.06 8.12 -51.93 -0.42 0.64 15 24 H 0.04 0.62 7.82 -51.93 -0.41 0.21 15 25 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.07 1.55 7.70 -51.93 -0.40 1.15 15 27 H 0.26 7.50 8.31 -40.82 -0.34 7.16 15 28 H 0.04 0.87 7.60 -51.93 -0.39 0.48 15 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 261.64 15.07 3.94 3.94 Total: -1.00 -28.96 261.64 -8.02 -36.98 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -3.96 Total: -2.99 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -0.64 Total: -15.00 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.47 Total: -36.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.60 Total: 16.93 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.96 -8.02 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306961476.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.468 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds