Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48507 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47593 * 119.99522 * 3 2 1 6 6 H 1.48501 * 109.47218 * 239.99758 * 3 2 1 7 7 C 1.40107 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99581 * 356.94570 * 7 2 1 9 9 C 1.40967 * 120.00145 * 176.93233 * 7 2 1 10 10 C 1.40861 * 119.67545 * 186.48498 * 9 7 2 11 11 C 1.36703 * 119.28548 * 180.02562 * 10 9 7 12 12 C 1.40214 * 118.62782 * 0.02562 * 11 10 9 13 13 C 1.47938 * 120.35866 * 180.02562 * 12 11 10 14 14 C 1.39637 * 120.14330 * 309.72527 * 13 12 11 15 15 C 1.37930 * 119.84725 * 179.73666 * 14 13 12 16 16 C 1.38398 * 120.14903 * 0.53800 * 15 14 13 17 17 C 1.38395 * 120.29472 * 359.71653 * 16 15 14 18 18 C 1.37927 * 120.14960 * 0.02562 * 17 16 15 19 19 C 1.40286 * 119.29133 * 0.02562 * 12 11 10 20 20 Cl 1.73600 * 119.67220 * 179.97438 * 19 12 11 21 21 N 1.31293 * 120.65418 * 359.71849 * 19 12 11 22 22 H 0.97000 * 119.99864 * 175.08823 * 1 2 3 23 23 H 1.07994 * 120.35351 * 359.97438 * 10 9 7 24 24 H 1.08004 * 120.68807 * 180.02562 * 11 10 9 25 25 H 1.08000 * 120.07680 * 0.02562 * 14 13 12 26 26 H 1.08005 * 119.92418 * 180.27448 * 15 14 13 27 27 H 1.07998 * 119.85240 * 179.74023 * 16 15 14 28 28 H 1.08001 * 119.92768 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.07845 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 1.2760 2.7465 -0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0949 1.6963 -1.2125 7 6 2.0076 -1.2134 0.0005 8 1 1.4687 -2.1479 0.0508 9 6 3.4158 -1.2143 -0.0648 10 6 4.1067 -2.4341 -0.2021 11 6 5.4723 -2.4257 -0.2641 12 6 6.1408 -1.1956 -0.1878 13 6 7.6178 -1.1420 -0.2516 14 6 8.3857 -1.9655 0.5743 15 6 9.7623 -1.9144 0.5059 16 6 10.3829 -1.0416 -0.3708 17 6 9.6278 -0.2189 -1.1883 18 6 8.2503 -0.2637 -1.1338 19 6 5.3940 -0.0160 -0.0504 20 17 6.2115 1.5125 0.0456 21 7 4.0827 -0.0561 0.0013 22 1 -0.4850 -0.8370 -0.0719 23 1 3.5635 -3.3658 -0.2569 24 1 6.0250 -3.3477 -0.3696 25 1 7.9027 -2.6442 1.2617 26 1 10.3574 -2.5540 1.1410 27 1 11.4611 -1.0026 -0.4174 28 1 10.1182 0.4603 -1.8699 29 1 7.6622 0.3791 -1.7720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309149273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = 23.881320 kcal Electronic energy + Delta-G solvation = -16076.701166 eV Core-core repulsion = 13375.155042 eV Total energy + Delta-G solvation = -2701.546124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.34522 -38.15275 -35.91097 -34.15122 -32.44194 -31.00273 -30.51684 -29.21379 -25.62086 -22.89832 -22.24860 -21.70710 -20.54613 -18.65919 -16.89389 -16.04713 -15.51924 -15.16686 -14.40049 -14.00140 -13.81304 -13.47593 -13.13151 -13.03590 -12.51961 -12.29743 -12.17080 -11.63896 -11.27657 -10.96050 -10.68956 -10.56043 -10.46082 -10.36988 -9.80027 -9.40564 -9.09869 -8.59436 -8.49655 -7.98757 -7.71060 -7.50840 -5.06077 1.48362 1.75547 2.24103 2.39448 2.63255 3.54611 3.55459 3.91940 4.13863 4.31615 4.39335 5.16214 5.21681 5.26842 5.28994 5.46762 5.64379 5.81224 5.88880 6.05927 6.18253 6.29557 6.38096 6.42578 6.75045 6.80838 6.84693 7.05613 7.13395 7.17979 7.32781 7.39295 7.73690 7.93633 8.27936 9.01703 9.71983 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.006934 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.381670 B = 4036.923502 C = 4690.905325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.042 3.958 3 Si 1.147 2.853 4 H -0.329 1.329 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.445 4.445 8 H 0.090 0.910 9 C 0.257 3.743 10 C -0.254 4.254 11 C -0.017 4.017 12 C -0.253 4.253 13 C 0.011 3.989 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.142 4.142 17 C -0.120 4.120 18 C -0.113 4.113 19 C 0.263 3.737 20 Cl -0.070 7.070 21 N -0.572 5.572 22 H 0.287 0.713 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.112 0.888 28 H 0.115 0.885 29 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 -1.937 -0.696 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.182 4.182 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.208 1.208 6 H -0.212 1.212 7 C -0.475 4.475 8 H 0.108 0.892 9 C 0.137 3.863 10 C -0.276 4.276 11 C -0.040 4.040 12 C -0.260 4.260 13 C 0.011 3.989 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.160 4.160 17 C -0.138 4.138 18 C -0.131 4.131 19 C 0.093 3.907 20 Cl -0.041 7.041 21 N -0.293 5.293 22 H 0.099 0.901 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.864 0.422 -0.537 11.883 hybrid contribution 0.554 -2.515 -0.109 2.578 sum 12.418 -2.093 -0.646 12.610 Atomic orbital electron populations 1.70641 1.08242 1.33182 1.28238 1.27987 0.95267 1.06476 0.88492 0.81884 0.70653 0.69178 0.80148 1.26210 1.20816 1.21176 1.20947 0.90373 0.96744 1.39417 0.89171 1.18419 0.93577 0.85854 0.88471 1.21345 0.93952 0.98389 1.13936 1.20666 0.93948 0.95250 0.94096 1.18384 0.91288 0.92001 1.24288 1.18624 0.91760 0.94666 0.93896 1.21257 0.93400 1.00171 0.99193 1.20965 0.94547 0.99256 0.99192 1.21024 0.99131 0.97861 0.97974 1.20985 0.93912 0.99389 0.99535 1.21379 0.94222 0.98918 0.98595 1.21364 0.89616 0.84624 0.95124 1.98320 1.77161 1.32346 1.96319 1.65775 1.06902 1.28874 1.27731 0.90125 0.86812 0.86782 0.86470 0.86771 0.86952 0.86721 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.31 13.65 55.55 0.76 -19.55 15 2 C 0.04 1.08 5.52 -17.33 -0.10 0.99 15 3 Si 1.15 28.16 25.44 -169.99 -4.33 23.83 15 4 H -0.33 -7.96 7.11 56.52 0.40 -7.56 15 5 H -0.28 -6.97 6.94 56.52 0.39 -6.58 15 6 H -0.28 -7.02 6.94 56.52 0.39 -6.63 15 7 C -0.44 -11.38 9.56 -37.85 -0.36 -11.74 15 8 H 0.09 2.25 8.06 -52.49 -0.42 1.82 15 9 C 0.26 6.38 6.42 -84.98 -0.55 5.83 15 10 C -0.25 -5.51 9.76 -39.15 -0.38 -5.89 15 11 C -0.02 -0.33 9.60 -39.39 -0.38 -0.71 15 12 C -0.25 -5.17 5.51 -104.41 -0.58 -5.74 15 13 C 0.01 0.20 5.12 -104.88 -0.54 -0.34 15 14 C -0.12 -1.91 9.55 -39.17 -0.37 -2.29 15 15 C -0.12 -1.64 10.03 -39.64 -0.40 -2.04 15 16 C -0.14 -1.84 10.04 -39.46 -0.40 -2.24 15 17 C -0.12 -1.68 10.03 -39.64 -0.40 -2.08 15 18 C -0.11 -1.86 8.19 -39.18 -0.32 -2.18 15 19 C 0.26 5.94 7.26 -17.01 -0.12 5.82 15 20 Cl -0.07 -1.39 26.15 -51.86 -1.36 -2.75 15 21 N -0.57 -14.29 4.47 -7.97 -0.04 -14.33 15 22 H 0.29 7.01 8.72 -40.82 -0.36 6.65 15 23 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 24 H 0.11 1.90 8.06 -52.48 -0.42 1.48 15 25 H 0.12 1.73 8.05 -52.49 -0.42 1.30 15 26 H 0.11 1.24 8.06 -52.48 -0.42 0.82 15 27 H 0.11 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.11 1.32 8.06 -52.49 -0.42 0.90 15 29 H 0.12 2.00 7.17 -52.49 -0.38 1.62 15 LS Contribution 269.58 15.07 4.06 4.06 Total: -1.00 -26.66 269.58 -8.29 -34.94 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -2.51 Total: -3.62 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -4.89 Total: -22.60 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.72 Total: -33.88 kcal Atomic # 14 Polarization: 28.16 SS G_CDS: -4.33 Total: 23.83 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.36 Total: -2.75 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.66 -8.29 -34.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309149273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.825 kcal (2) G-P(sol) polarization free energy of solvation -26.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds