Wall clock time and date at job start Mon Mar 30 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48507 * 109.47021 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47593 * 119.99522 * 3 2 1 6 6 H 1.48501 * 109.47218 * 239.99758 * 3 2 1 7 7 C 1.40107 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99581 * 356.94570 * 7 2 1 9 9 C 1.40967 * 120.00145 * 176.93233 * 7 2 1 10 10 C 1.40861 * 119.67545 * 186.48498 * 9 7 2 11 11 C 1.36703 * 119.28548 * 180.02562 * 10 9 7 12 12 C 1.40214 * 118.62782 * 0.02562 * 11 10 9 13 13 C 1.47938 * 120.35866 * 180.02562 * 12 11 10 14 14 C 1.39637 * 120.14330 * 309.72527 * 13 12 11 15 15 C 1.37930 * 119.84725 * 179.73666 * 14 13 12 16 16 C 1.38398 * 120.14903 * 0.53800 * 15 14 13 17 17 C 1.38395 * 120.29472 * 359.71653 * 16 15 14 18 18 C 1.37927 * 120.14960 * 0.02562 * 17 16 15 19 19 C 1.40286 * 119.29133 * 0.02562 * 12 11 10 20 20 Cl 1.73600 * 119.67220 * 179.97438 * 19 12 11 21 21 N 1.31293 * 120.65418 * 359.71849 * 19 12 11 22 22 H 0.97000 * 119.99864 * 175.08823 * 1 2 3 23 23 H 1.07994 * 120.35351 * 359.97438 * 10 9 7 24 24 H 1.08004 * 120.68807 * 180.02562 * 11 10 9 25 25 H 1.08000 * 120.07680 * 0.02562 * 14 13 12 26 26 H 1.08005 * 119.92418 * 180.27448 * 15 14 13 27 27 H 1.07998 * 119.85240 * 179.74023 * 16 15 14 28 28 H 1.08001 * 119.92768 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.07845 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 1.2760 2.7465 -0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0949 1.6963 -1.2125 7 6 2.0076 -1.2134 0.0005 8 1 1.4687 -2.1479 0.0508 9 6 3.4158 -1.2143 -0.0648 10 6 4.1067 -2.4341 -0.2021 11 6 5.4723 -2.4257 -0.2641 12 6 6.1408 -1.1956 -0.1878 13 6 7.6178 -1.1420 -0.2516 14 6 8.3857 -1.9655 0.5743 15 6 9.7623 -1.9144 0.5059 16 6 10.3829 -1.0416 -0.3708 17 6 9.6278 -0.2189 -1.1883 18 6 8.2503 -0.2637 -1.1338 19 6 5.3940 -0.0160 -0.0504 20 17 6.2115 1.5125 0.0456 21 7 4.0827 -0.0561 0.0013 22 1 -0.4850 -0.8370 -0.0719 23 1 3.5635 -3.3658 -0.2569 24 1 6.0250 -3.3477 -0.3696 25 1 7.9027 -2.6442 1.2617 26 1 10.3574 -2.5540 1.1410 27 1 11.4611 -1.0026 -0.4174 28 1 10.1182 0.4603 -1.8699 29 1 7.6622 0.3791 -1.7720 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309149273.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:24 Heat of formation + Delta-G solvation = 11.252119 kcal Electronic energy + Delta-G solvation = -16077.248809 eV Core-core repulsion = 13375.155042 eV Total energy + Delta-G solvation = -2702.093767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94490 -39.48922 -37.55930 -35.95802 -34.03326 -32.65922 -31.68356 -30.72838 -27.26778 -24.48747 -23.79847 -22.99646 -22.00631 -20.53541 -18.25452 -17.67142 -17.11953 -16.53961 -15.82655 -15.72207 -15.32112 -15.09918 -14.65567 -14.36769 -14.18701 -13.86655 -13.56277 -13.12521 -13.01056 -12.47048 -12.31690 -12.23882 -11.90793 -11.83403 -11.61619 -11.34453 -10.72867 -10.05924 -9.86367 -9.71575 -9.39399 -9.22006 -6.92361 0.05770 0.56654 0.62462 0.79388 0.96418 1.56280 1.62555 1.96447 2.36547 2.47038 3.01173 3.35347 3.85201 4.03872 4.16483 4.23024 4.35315 4.37745 4.51236 4.63277 4.77992 4.80907 5.06787 5.19537 5.26803 5.29860 5.40632 5.58729 5.70538 5.71505 5.83733 5.87383 6.14504 6.22790 6.43151 7.21790 7.82711 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.034332 B = 0.006934 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.381670 B = 4036.923502 C = 4690.905325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.022 3.978 3 Si 1.175 2.825 4 H -0.329 1.329 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.245 3.755 10 C -0.256 4.256 11 C -0.013 4.013 12 C -0.223 4.223 13 C -0.025 4.025 14 C -0.125 4.125 15 C -0.119 4.119 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.125 4.125 19 C 0.227 3.773 20 Cl -0.053 7.053 21 N -0.596 5.596 22 H 0.288 0.712 23 H 0.131 0.869 24 H 0.153 0.847 25 H 0.124 0.876 26 H 0.147 0.853 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.751 -2.951 -0.689 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.198 4.198 3 Si 1.009 2.991 4 H -0.262 1.262 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.516 4.516 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.278 4.278 11 C -0.036 4.036 12 C -0.230 4.230 13 C -0.026 4.026 14 C -0.143 4.143 15 C -0.137 4.137 16 C -0.147 4.147 17 C -0.140 4.140 18 C -0.143 4.143 19 C 0.060 3.940 20 Cl -0.025 7.025 21 N -0.318 5.318 22 H 0.100 0.900 23 H 0.149 0.851 24 H 0.171 0.829 25 H 0.142 0.858 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.158 0.842 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 15.980 -0.576 -0.531 16.000 hybrid contribution -0.212 -2.278 -0.131 2.291 sum 15.768 -2.854 -0.662 16.038 Atomic orbital electron populations 1.70630 1.08365 1.33286 1.31126 1.28287 0.95574 1.07461 0.88448 0.81463 0.69865 0.68556 0.79174 1.26234 1.21787 1.22068 1.20868 0.91067 0.96399 1.43226 0.89726 1.18660 0.93633 0.87054 0.88391 1.21586 0.94989 0.98028 1.13173 1.21108 0.93349 0.96610 0.92497 1.18900 0.93245 0.91440 1.19404 1.18596 0.90137 0.97269 0.96556 1.21401 0.94530 0.99611 0.98803 1.21350 0.93778 0.99334 0.99240 1.21503 1.00978 0.96042 0.96134 1.21299 0.92862 0.99849 1.00000 1.21387 0.95550 0.98682 0.98668 1.21783 0.89341 0.86319 0.96521 1.98309 1.76552 1.31353 1.96294 1.65627 1.08291 1.29483 1.28400 0.90020 0.85063 0.82925 0.85798 0.83564 0.83422 0.84244 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.82 13.65 21.85 0.30 -43.52 15 2 C 0.02 1.21 5.52 85.31 0.47 1.68 15 3 Si 1.17 59.14 25.44 68.60 1.75 60.89 15 4 H -0.33 -16.19 7.11 99.48 0.71 -15.48 15 5 H -0.29 -14.75 6.94 99.48 0.69 -14.06 15 6 H -0.29 -14.83 6.94 99.48 0.69 -14.14 15 7 C -0.48 -25.68 9.56 23.39 0.22 -25.45 15 8 H 0.08 4.41 8.06 -2.91 -0.02 4.39 15 9 C 0.25 12.31 6.42 40.15 0.26 12.57 15 10 C -0.26 -10.85 9.76 22.55 0.22 -10.63 15 11 C -0.01 -0.46 9.60 22.39 0.21 -0.25 15 12 C -0.22 -8.75 5.51 -19.73 -0.11 -8.86 15 13 C -0.02 -0.82 5.12 -20.03 -0.10 -0.92 15 14 C -0.13 -3.44 9.55 22.53 0.22 -3.22 15 15 C -0.12 -2.59 10.03 22.23 0.22 -2.37 15 16 C -0.13 -2.64 10.04 22.35 0.22 -2.41 15 17 C -0.12 -2.90 10.03 22.23 0.22 -2.68 15 18 C -0.12 -3.78 8.19 22.53 0.18 -3.60 15 19 C 0.23 10.18 7.26 85.27 0.62 10.80 15 20 Cl -0.05 -2.10 26.15 -2.72 -0.07 -2.17 15 21 N -0.60 -30.12 4.47 -179.13 -0.80 -30.92 15 22 H 0.29 14.76 8.72 -92.71 -0.81 13.95 15 23 H 0.13 5.02 8.06 -2.91 -0.02 5.00 15 24 H 0.15 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.12 3.17 8.05 -2.91 -0.02 3.15 15 26 H 0.15 2.27 8.06 -2.91 -0.02 2.24 15 27 H 0.15 2.04 8.06 -2.91 -0.02 2.02 15 28 H 0.14 2.58 8.06 -2.91 -0.02 2.56 15 29 H 0.11 3.45 7.17 -2.91 -0.02 3.43 15 Total: -1.00 -58.70 269.58 5.13 -53.57 By element: Atomic # 1 Polarization: -3.59 SS G_CDS: 1.09 Total: -2.50 kcal Atomic # 6 Polarization: -38.22 SS G_CDS: 2.87 Total: -35.35 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -0.50 Total: -74.44 kcal Atomic # 14 Polarization: 59.14 SS G_CDS: 1.75 Total: 60.89 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.07 Total: -2.17 kcal Total: -58.70 5.13 -53.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309149273.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.821 kcal (2) G-P(sol) polarization free energy of solvation -58.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds