Wall clock time and date at job start Mon Mar 30 2020 06:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86792 * 120.00042 * 2 1 4 4 H 1.48496 * 109.47456 * 274.63345 * 3 2 1 5 5 H 1.48497 * 109.47268 * 34.63186 * 3 2 1 6 6 H 1.48502 * 109.47485 * 154.63365 * 3 2 1 7 7 C 1.40184 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00074 * 334.58259 * 7 2 1 9 9 C 1.40886 * 119.99888 * 154.58350 * 7 2 1 10 10 C 1.41259 * 121.11150 * 314.12466 * 9 7 2 11 11 Cl 1.73596 * 120.52122 * 359.70153 * 10 9 7 12 12 C 1.37661 * 118.95124 * 179.72654 * 10 9 7 13 13 N 1.32181 * 121.33166 * 359.97438 * 12 10 9 14 14 C 1.31674 * 122.52313 * 359.97438 * 13 12 10 15 15 C 1.39208 * 120.84170 * 0.02562 * 14 13 12 16 16 C 1.47864 * 120.71346 * 180.02562 * 15 14 13 17 17 C 1.39655 * 120.14823 * 129.70146 * 16 15 14 18 18 C 1.37921 * 119.84649 * 179.77049 * 17 16 15 19 19 C 1.38396 * 120.15095 * 0.52968 * 18 17 16 20 20 C 1.38406 * 120.30269 * 359.70085 * 19 18 17 21 21 C 1.37922 * 120.14860 * 0.04217 * 20 19 18 22 22 H 0.96997 * 120.00311 * 0.02562 * 1 2 3 23 23 H 1.08008 * 119.33060 * 180.02562 * 12 10 9 24 24 H 1.08000 * 119.57548 * 180.02562 * 14 13 12 25 25 H 1.08003 * 120.07849 * 0.02562 * 17 16 15 26 26 H 1.07996 * 119.92973 * 180.22534 * 18 17 16 27 27 H 1.08000 * 119.85227 * 179.72117 * 19 18 17 28 28 H 1.07995 * 119.92839 * 180.02562 * 20 19 18 29 29 H 1.08001 * 120.07791 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3904 2.1030 -1.3954 5 1 1.4907 2.6224 0.7956 6 1 3.5840 1.4139 0.5998 7 6 2.0077 -1.2140 -0.0005 8 1 1.5461 -2.1042 0.4005 9 6 3.3143 -1.2729 -0.5242 10 6 3.6333 -0.6676 -1.7601 11 17 2.4145 0.1633 -2.6754 12 6 4.9257 -0.7474 -2.2273 13 7 5.8662 -1.3759 -1.5435 14 6 5.6306 -1.9582 -0.3862 15 6 4.3578 -1.9371 0.1773 16 6 4.0965 -2.5914 1.4773 17 6 3.4411 -1.8940 2.4943 18 6 3.1964 -2.5119 3.7029 19 6 3.6085 -3.8163 3.9127 20 6 4.2628 -4.5117 2.9107 21 6 4.5092 -3.9077 1.6956 22 1 -0.4850 0.8400 -0.0004 23 1 5.1764 -0.2864 -3.1713 24 1 6.4351 -2.4584 0.1324 25 1 3.1230 -0.8745 2.3335 26 1 2.6865 -1.9750 4.4890 27 1 3.4183 -4.2940 4.8625 28 1 4.5813 -5.5295 3.0809 29 1 5.0195 -4.4515 0.9144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309150891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:50 Heat of formation + Delta-G solvation = 42.078604 kcal Electronic energy + Delta-G solvation = -16483.046812 eV Core-core repulsion = 13782.289782 eV Total energy + Delta-G solvation = -2700.757030 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.22788 -37.87227 -35.48979 -34.09894 -32.30243 -30.88779 -30.23079 -28.41742 -26.11086 -22.98288 -22.08722 -21.31824 -20.32154 -18.00948 -16.51365 -15.84139 -15.26637 -15.18525 -14.45553 -14.12081 -13.96247 -13.15633 -13.04086 -12.84811 -12.79209 -12.20690 -12.04145 -11.77088 -11.36035 -11.01405 -10.79529 -10.57504 -10.31237 -10.11736 -9.63450 -9.11475 -8.76892 -8.37245 -8.30761 -7.95350 -7.53651 -7.11703 -4.76007 1.61273 2.00595 2.29143 2.44160 3.05540 3.09920 3.18794 3.37065 3.89985 4.32653 4.43169 5.00365 5.33909 5.42739 5.49444 5.51830 5.72865 5.94239 6.03045 6.15939 6.24875 6.44905 6.56214 6.63141 6.74479 6.92957 7.00633 7.08100 7.23707 7.43039 7.59547 7.63552 8.09624 8.25605 8.51854 9.03812 9.86697 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.009819 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.452275 B = 2850.946712 C = 3713.160361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.111 3.889 3 Si 0.871 3.129 4 H -0.236 1.236 5 H -0.282 1.282 6 H -0.253 1.253 7 C -0.442 4.442 8 H 0.102 0.898 9 C 0.126 3.874 10 C -0.177 4.177 11 Cl -0.084 7.084 12 C 0.124 3.876 13 N -0.557 5.557 14 C 0.126 3.874 15 C -0.193 4.193 16 C 0.010 3.990 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.139 4.139 20 C -0.127 4.127 21 C -0.125 4.125 22 H 0.288 0.712 23 H 0.135 0.865 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -1.583 3.309 5.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.114 4.114 3 Si 0.694 3.306 4 H -0.159 1.159 5 H -0.208 1.208 6 H -0.177 1.177 7 C -0.471 4.471 8 H 0.120 0.880 9 C 0.118 3.882 10 C -0.208 4.208 11 Cl -0.056 7.056 12 C -0.029 4.029 13 N -0.271 5.271 14 C -0.027 4.027 15 C -0.198 4.198 16 C 0.010 3.990 17 C -0.104 4.104 18 C -0.144 4.144 19 C -0.158 4.158 20 C -0.145 4.145 21 C -0.143 4.143 22 H 0.099 0.901 23 H 0.152 0.848 24 H 0.152 0.848 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.589 -1.447 2.870 5.603 hybrid contribution -0.902 0.807 0.283 1.243 sum 3.687 -0.640 3.153 4.893 Atomic orbital electron populations 1.69669 1.08320 1.30654 1.31196 1.26011 0.94394 1.01201 0.89779 0.87023 0.81316 0.80936 0.81348 1.15924 1.20826 1.17661 1.19142 0.95240 0.97434 1.35269 0.87993 1.17660 0.93129 0.88344 0.89109 1.22149 0.90869 1.11557 0.96263 1.98255 1.56817 1.76641 1.73838 1.22062 0.87541 0.95149 0.98132 1.67546 1.34331 1.15675 1.09562 1.22329 0.94440 0.94802 0.91177 1.19745 0.93623 1.10725 0.95666 1.18569 0.95664 0.92512 0.92296 1.21341 0.96678 1.00469 0.91940 1.21013 1.00719 0.95249 0.97432 1.21010 1.00769 0.95167 0.98814 1.20893 1.00466 0.99285 0.93872 1.21243 1.01518 0.94476 0.97067 0.90139 0.84772 0.84832 0.85725 0.86823 0.87143 0.86963 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.30 13.92 55.56 0.77 -18.53 15 2 C 0.11 2.69 4.28 -17.31 -0.07 2.62 15 3 Si 0.87 19.36 24.95 -169.99 -4.24 15.12 15 4 H -0.24 -5.09 5.64 56.52 0.32 -4.78 15 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 15 6 H -0.25 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.44 -11.04 6.81 -37.85 -0.26 -11.30 15 8 H 0.10 2.75 8.00 -52.49 -0.42 2.33 15 9 C 0.13 3.00 4.57 -106.23 -0.49 2.52 15 10 C -0.18 -4.06 5.17 -38.65 -0.20 -4.26 15 11 Cl -0.08 -1.84 23.06 -51.86 -1.20 -3.03 15 12 C 0.12 2.66 10.94 -17.61 -0.19 2.47 15 13 N -0.56 -12.03 10.31 -13.11 -0.14 -12.17 15 14 C 0.13 2.62 10.69 -17.26 -0.18 2.43 15 15 C -0.19 -4.24 5.53 -104.08 -0.58 -4.81 15 16 C 0.01 0.21 5.14 -104.90 -0.54 -0.33 15 17 C -0.09 -1.69 8.54 -39.17 -0.33 -2.02 15 18 C -0.13 -2.12 10.03 -39.64 -0.40 -2.51 15 19 C -0.14 -2.12 10.04 -39.46 -0.40 -2.52 15 20 C -0.13 -1.96 10.03 -39.64 -0.40 -2.35 15 21 C -0.12 -2.18 9.54 -39.17 -0.37 -2.55 15 22 H 0.29 6.55 8.29 -40.82 -0.34 6.21 15 23 H 0.13 2.52 8.06 -52.48 -0.42 2.09 15 24 H 0.13 2.39 8.05 -52.49 -0.42 1.96 15 25 H 0.12 2.60 7.37 -52.48 -0.39 2.21 15 26 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 15 28 H 0.11 1.41 8.06 -52.49 -0.42 0.98 15 29 H 0.12 1.85 8.05 -52.49 -0.42 1.42 15 LS Contribution 265.39 15.07 4.00 4.00 Total: -1.00 -25.95 265.39 -7.77 -33.72 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -2.56 Total: 3.52 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -4.41 Total: -22.63 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.64 Total: -30.70 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.24 Total: 15.12 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -1.20 Total: -3.03 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -25.95 -7.77 -33.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309150891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.800 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds