Wall clock time and date at job start Mon Mar 30 2020 06:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86792 * 120.00042 * 2 1 4 4 H 1.48496 * 109.47456 * 274.63345 * 3 2 1 5 5 H 1.48497 * 109.47268 * 34.63186 * 3 2 1 6 6 H 1.48502 * 109.47485 * 154.63365 * 3 2 1 7 7 C 1.40184 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00074 * 334.58259 * 7 2 1 9 9 C 1.40886 * 119.99888 * 154.58350 * 7 2 1 10 10 C 1.41259 * 121.11150 * 314.12466 * 9 7 2 11 11 Cl 1.73596 * 120.52122 * 359.70153 * 10 9 7 12 12 C 1.37661 * 118.95124 * 179.72654 * 10 9 7 13 13 N 1.32181 * 121.33166 * 359.97438 * 12 10 9 14 14 C 1.31674 * 122.52313 * 359.97438 * 13 12 10 15 15 C 1.39208 * 120.84170 * 0.02562 * 14 13 12 16 16 C 1.47864 * 120.71346 * 180.02562 * 15 14 13 17 17 C 1.39655 * 120.14823 * 129.70146 * 16 15 14 18 18 C 1.37921 * 119.84649 * 179.77049 * 17 16 15 19 19 C 1.38396 * 120.15095 * 0.52968 * 18 17 16 20 20 C 1.38406 * 120.30269 * 359.70085 * 19 18 17 21 21 C 1.37922 * 120.14860 * 0.04217 * 20 19 18 22 22 H 0.96997 * 120.00311 * 0.02562 * 1 2 3 23 23 H 1.08008 * 119.33060 * 180.02562 * 12 10 9 24 24 H 1.08000 * 119.57548 * 180.02562 * 14 13 12 25 25 H 1.08003 * 120.07849 * 0.02562 * 17 16 15 26 26 H 1.07996 * 119.92973 * 180.22534 * 18 17 16 27 27 H 1.08000 * 119.85227 * 179.72117 * 19 18 17 28 28 H 1.07995 * 119.92839 * 180.02562 * 20 19 18 29 29 H 1.08001 * 120.07791 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3904 2.1030 -1.3954 5 1 1.4907 2.6224 0.7956 6 1 3.5840 1.4139 0.5998 7 6 2.0077 -1.2140 -0.0005 8 1 1.5461 -2.1042 0.4005 9 6 3.3143 -1.2729 -0.5242 10 6 3.6333 -0.6676 -1.7601 11 17 2.4145 0.1633 -2.6754 12 6 4.9257 -0.7474 -2.2273 13 7 5.8662 -1.3759 -1.5435 14 6 5.6306 -1.9582 -0.3862 15 6 4.3578 -1.9371 0.1773 16 6 4.0965 -2.5914 1.4773 17 6 3.4411 -1.8940 2.4943 18 6 3.1964 -2.5119 3.7029 19 6 3.6085 -3.8163 3.9127 20 6 4.2628 -4.5117 2.9107 21 6 4.5092 -3.9077 1.6956 22 1 -0.4850 0.8400 -0.0004 23 1 5.1764 -0.2864 -3.1713 24 1 6.4351 -2.4584 0.1324 25 1 3.1230 -0.8745 2.3335 26 1 2.6865 -1.9750 4.4890 27 1 3.4183 -4.2940 4.8625 28 1 4.5813 -5.5295 3.0809 29 1 5.0195 -4.4515 0.9144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309150891.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:49 Heat of formation + Delta-G solvation = 28.839131 kcal Electronic energy + Delta-G solvation = -16483.620919 eV Core-core repulsion = 13782.289782 eV Total energy + Delta-G solvation = -2701.331137 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84690 -39.32215 -37.23947 -35.89090 -33.92609 -32.55052 -31.59497 -29.96466 -27.88431 -24.54050 -23.65587 -22.83883 -21.83226 -19.82980 -17.97676 -17.53642 -16.98124 -16.63645 -16.19118 -15.56636 -15.47125 -14.93062 -14.77478 -14.26474 -14.18785 -13.86951 -13.55935 -13.48236 -12.97090 -12.84278 -12.32536 -12.09784 -11.94076 -11.69271 -11.40112 -10.88312 -10.39468 -10.04272 -9.71228 -9.65693 -9.07863 -8.95652 -6.61916 0.07510 0.53131 0.66892 0.88516 1.25977 1.29760 1.38258 1.60660 2.08709 2.55971 2.99422 3.28662 3.75035 4.04856 4.20413 4.25386 4.31653 4.41370 4.49085 4.72136 4.79503 4.87239 4.96865 5.17737 5.25103 5.32969 5.54896 5.67584 5.73601 5.90682 5.96130 6.15123 6.28714 6.45187 6.66149 7.30949 8.08815 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.009819 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.452275 B = 2850.946712 C = 3713.160361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.094 3.906 3 Si 0.903 3.097 4 H -0.225 1.225 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.461 4.461 8 H 0.068 0.932 9 C 0.110 3.890 10 C -0.191 4.191 11 Cl -0.080 7.080 12 C 0.123 3.877 13 N -0.555 5.555 14 C 0.123 3.877 15 C -0.193 4.193 16 C -0.022 4.022 17 C -0.110 4.110 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.128 4.128 22 H 0.295 0.705 23 H 0.163 0.837 24 H 0.165 0.835 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 -2.628 4.102 7.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.127 4.127 3 Si 0.725 3.275 4 H -0.148 1.148 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.491 4.491 8 H 0.086 0.914 9 C 0.102 3.898 10 C -0.222 4.222 11 Cl -0.052 7.052 12 C -0.031 4.031 13 N -0.268 5.268 14 C -0.031 4.031 15 C -0.197 4.197 16 C -0.023 4.023 17 C -0.128 4.128 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.146 4.146 22 H 0.106 0.894 23 H 0.180 0.820 24 H 0.182 0.818 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.166 0.834 28 H 0.168 0.832 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.112 -2.492 3.666 7.550 hybrid contribution -1.232 0.985 0.102 1.581 sum 4.880 -1.507 3.769 6.348 Atomic orbital electron populations 1.69676 1.09012 1.31476 1.33404 1.26323 0.94630 1.02437 0.89346 0.86545 0.79732 0.79439 0.81818 1.14807 1.19538 1.19524 1.18849 0.96200 0.96732 1.37275 0.91377 1.17920 0.93276 0.89053 0.89558 1.22339 0.91736 1.11885 0.96231 1.98246 1.56830 1.76516 1.73582 1.22474 0.86860 0.94796 0.99000 1.67635 1.34296 1.15132 1.09755 1.22789 0.94799 0.94479 0.91014 1.20111 0.93656 1.09503 0.96423 1.18649 0.97903 0.94054 0.91696 1.21270 0.98082 0.99831 0.93607 1.21284 1.00605 0.96347 0.96767 1.21468 0.98824 0.94173 1.00262 1.21336 0.99111 1.00780 0.92698 1.21437 1.01261 0.93407 0.98491 0.89443 0.82026 0.81773 0.88417 0.84967 0.83378 0.83208 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.62 13.92 21.87 0.30 -41.32 15 2 C 0.09 4.70 4.28 85.34 0.37 5.07 15 3 Si 0.90 40.20 24.95 68.60 1.71 41.91 15 4 H -0.23 -9.53 5.64 99.48 0.56 -8.96 15 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 6 H -0.27 -12.70 7.11 99.48 0.71 -12.00 15 7 C -0.46 -23.96 6.81 23.39 0.16 -23.80 15 8 H 0.07 3.91 8.00 -2.91 -0.02 3.89 15 9 C 0.11 5.35 4.57 -20.90 -0.10 5.25 15 10 C -0.19 -8.71 5.17 22.88 0.12 -8.59 15 11 Cl -0.08 -3.49 23.06 -2.72 -0.06 -3.55 15 12 C 0.12 5.07 10.94 84.50 0.92 6.00 15 13 N -0.56 -22.95 10.31 -195.38 -2.02 -24.96 15 14 C 0.12 4.90 10.69 84.95 0.91 5.81 15 15 C -0.19 -8.46 5.53 -19.51 -0.11 -8.57 15 16 C -0.02 -0.89 5.14 -20.04 -0.10 -0.99 15 17 C -0.11 -4.37 8.54 22.54 0.19 -4.18 15 18 C -0.13 -4.26 10.03 22.23 0.22 -4.04 15 19 C -0.13 -3.50 10.04 22.35 0.22 -3.27 15 20 C -0.12 -3.29 10.03 22.23 0.22 -3.07 15 21 C -0.13 -4.20 9.54 22.54 0.22 -3.98 15 22 H 0.29 13.75 8.29 -92.71 -0.77 12.98 15 23 H 0.16 5.69 8.06 -2.91 -0.02 5.67 15 24 H 0.17 5.45 8.05 -2.91 -0.02 5.43 15 25 H 0.10 4.32 7.37 -2.91 -0.02 4.30 15 26 H 0.13 3.65 8.06 -2.91 -0.02 3.63 15 27 H 0.15 2.91 8.06 -2.91 -0.02 2.88 15 28 H 0.15 2.96 8.06 -2.91 -0.02 2.93 15 29 H 0.13 3.78 8.05 -2.91 -0.02 3.76 15 Total: -1.00 -56.62 265.39 4.21 -52.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.02 Total: 13.87 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.25 Total: -38.37 kcal Atomic # 7 Polarization: -64.57 SS G_CDS: -1.71 Total: -66.28 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.71 Total: 41.91 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.06 Total: -3.55 kcal Total: -56.62 4.21 -52.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309150891.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.256 kcal (2) G-P(sol) polarization free energy of solvation -56.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds