Wall clock time and date at job start Mon Mar 30 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47202 * 269.99741 * 3 2 1 5 5 H 1.48500 * 109.47459 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47262 * 149.99954 * 3 2 1 7 7 C 1.40048 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 165.86177 * 7 2 1 9 9 C 1.41447 * 120.00385 * 346.13583 * 7 2 1 10 10 C 1.41153 * 120.99156 * 335.39400 * 9 7 2 11 11 C 1.37694 * 119.08784 * 179.74897 * 10 9 7 12 12 N 1.31941 * 121.20536 * 0.54151 * 11 10 9 13 13 C 1.32753 * 122.23107 * 359.71458 * 12 11 10 14 14 C 1.48344 * 119.62506 * 180.02562 * 13 12 11 15 15 C 1.39368 * 120.11805 * 144.74427 * 14 13 12 16 16 C 1.38017 * 119.86925 * 179.74140 * 15 14 13 17 17 C 1.38320 * 120.12301 * 0.50726 * 16 15 14 18 18 C 1.38329 * 120.25410 * 359.77015 * 17 16 15 19 19 C 1.38011 * 120.11833 * 359.97438 * 18 17 16 20 20 C 1.39094 * 120.74325 * 0.02562 * 13 12 11 21 21 Cl 1.73600 * 120.63792 * 179.97438 * 20 13 12 22 22 H 0.97001 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.45629 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.39566 * 180.25059 * 11 10 9 25 25 H 1.07996 * 120.06870 * 0.02562 * 15 14 13 26 26 H 1.07998 * 119.93719 * 180.27989 * 16 15 14 27 27 H 1.08001 * 119.87308 * 179.74314 * 17 16 15 28 28 H 1.07996 * 119.94119 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.06315 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2129 0.0005 8 1 3.0631 -1.2271 -0.2279 9 6 1.3314 -2.4199 0.2946 10 6 0.1495 -2.4214 1.0664 11 6 -0.4798 -3.6186 1.3246 12 7 0.0079 -4.7585 0.8734 13 6 1.1180 -4.8158 0.1477 14 6 1.6144 -6.1294 -0.3306 15 6 2.2318 -6.2324 -1.5758 16 6 2.6966 -7.4561 -2.0134 17 6 2.5412 -8.5807 -1.2232 18 6 1.9240 -8.4853 0.0112 19 6 1.4602 -7.2658 0.4611 20 6 1.8209 -3.6581 -0.1693 21 17 3.2726 -3.7363 -1.1179 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2580 -1.4958 1.4453 24 1 -1.3866 -3.6251 1.9112 25 1 2.3504 -5.3557 -2.1952 26 1 3.1792 -7.5364 -2.9762 27 1 2.9027 -9.5370 -1.5714 28 1 1.8050 -9.3666 0.6238 29 1 0.9789 -7.1923 1.4251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309168005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:37 Heat of formation + Delta-G solvation = 36.858478 kcal Electronic energy + Delta-G solvation = -16037.942617 eV Core-core repulsion = 13336.959225 eV Total energy + Delta-G solvation = -2700.983392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12173 -37.82421 -35.33324 -34.37429 -31.69863 -30.78494 -30.38232 -28.19860 -26.14613 -22.96733 -22.39011 -21.15114 -20.52475 -17.77087 -16.42237 -15.65986 -15.19102 -15.01333 -14.62798 -14.07562 -13.93759 -13.18257 -12.85645 -12.80311 -12.58196 -12.08780 -11.58152 -11.45790 -11.37979 -11.14715 -10.77415 -10.61197 -10.45265 -10.15600 -9.68227 -9.44773 -8.71628 -8.42380 -8.19573 -8.06846 -7.32182 -7.01105 -4.79014 1.52192 1.88647 2.49552 2.70587 2.94366 2.98790 3.10033 3.48587 3.74059 4.24406 4.51738 5.09444 5.31946 5.32990 5.44921 5.54404 5.90981 5.96396 6.07795 6.35753 6.43000 6.56435 6.61961 6.76119 6.89869 6.91449 7.01714 7.14428 7.24681 7.44643 7.56363 7.83370 8.20539 8.44570 8.50950 9.31533 9.87669 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.006409 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.380624 B = 4367.505384 C = 5036.793062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.076 3.924 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.435 4.435 8 H 0.092 0.908 9 C 0.131 3.869 10 C -0.201 4.201 11 C 0.086 3.914 12 N -0.552 5.552 13 C 0.174 3.826 14 C -0.021 4.021 15 C -0.102 4.102 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.170 4.170 21 Cl -0.097 7.097 22 H 0.287 0.713 23 H 0.136 0.864 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -5.853 -0.912 6.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.465 4.465 8 H 0.110 0.890 9 C 0.123 3.877 10 C -0.223 4.223 11 C -0.065 4.065 12 N -0.266 5.266 13 C 0.037 3.963 14 C -0.022 4.022 15 C -0.120 4.120 16 C -0.149 4.149 17 C -0.146 4.146 18 C -0.152 4.152 19 C -0.107 4.107 20 C -0.202 4.202 21 Cl -0.069 7.069 22 H 0.098 0.902 23 H 0.154 0.846 24 H 0.147 0.853 25 H 0.153 0.847 26 H 0.135 0.865 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.356 -6.452 -0.774 6.912 hybrid contribution 0.781 1.638 -0.292 1.838 sum 3.136 -4.814 -1.065 5.843 Atomic orbital electron populations 1.69739 1.07802 1.30049 1.32760 1.26041 0.94859 1.01886 0.91713 0.86150 0.80613 0.79589 0.79640 1.19067 1.19793 1.18077 1.19724 0.97505 0.89966 1.39314 0.89041 1.17615 0.91153 0.90801 0.88121 1.22307 0.98874 0.98567 1.02571 1.22058 0.98296 0.88399 0.97737 1.67505 1.13194 1.29484 1.16467 1.19036 0.91838 0.89922 0.95463 1.18678 0.97467 0.92005 0.94014 1.21797 0.96343 0.98139 0.95744 1.20996 1.01448 0.92721 0.99755 1.21073 1.00363 0.98088 0.95054 1.20993 1.00306 0.97321 0.96599 1.21217 0.98070 0.91547 0.99888 1.21833 0.93976 0.95506 1.08858 1.98187 1.38693 1.98034 1.71993 0.90206 0.84614 0.85341 0.84655 0.86534 0.86842 0.86589 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.58 10.80 55.55 0.60 -17.98 15 2 C 0.08 1.77 5.25 -17.34 -0.09 1.68 15 3 Si 0.92 17.51 29.58 -169.99 -5.03 12.48 15 4 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 5 H -0.27 -5.06 7.11 56.52 0.40 -4.65 15 6 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 7 C -0.43 -10.86 8.63 -37.68 -0.33 -11.18 15 8 H 0.09 2.23 7.19 -52.48 -0.38 1.86 15 9 C 0.13 3.36 5.61 -106.53 -0.60 2.76 15 10 C -0.20 -4.93 8.78 -38.67 -0.34 -5.27 15 11 C 0.09 1.97 11.15 -17.70 -0.20 1.77 15 12 N -0.55 -13.05 9.93 -9.92 -0.10 -13.15 15 13 C 0.17 4.07 6.48 -82.99 -0.54 3.53 15 14 C -0.02 -0.43 5.57 -104.90 -0.58 -1.01 15 15 C -0.10 -1.89 8.17 -39.24 -0.32 -2.21 15 16 C -0.13 -2.04 10.03 -39.63 -0.40 -2.43 15 17 C -0.13 -1.83 10.04 -39.52 -0.40 -2.22 15 18 C -0.13 -2.03 10.03 -39.63 -0.40 -2.43 15 19 C -0.09 -1.61 9.58 -39.25 -0.38 -1.99 15 20 C -0.17 -4.11 6.34 -38.22 -0.24 -4.36 15 21 Cl -0.10 -2.08 23.50 -51.86 -1.22 -3.30 15 22 H 0.29 6.16 8.29 -40.82 -0.34 5.83 15 23 H 0.14 3.34 6.13 -52.49 -0.32 3.02 15 24 H 0.13 2.54 8.06 -52.49 -0.42 2.12 15 25 H 0.14 2.59 5.56 -52.49 -0.29 2.30 15 26 H 0.12 1.50 8.06 -52.49 -0.42 1.07 15 27 H 0.11 1.28 8.06 -52.49 -0.42 0.85 15 28 H 0.12 1.42 8.06 -52.49 -0.42 0.99 15 29 H 0.12 2.24 7.96 -52.49 -0.42 1.82 15 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -26.48 268.15 -8.74 -35.23 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.23 Total: 6.04 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -4.80 Total: -23.36 kcal Atomic # 7 Polarization: -31.64 SS G_CDS: 0.50 Total: -31.14 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 17 Polarization: -2.08 SS G_CDS: -1.22 Total: -3.30 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.48 -8.74 -35.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309168005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.085 kcal (2) G-P(sol) polarization free energy of solvation -26.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds