Wall clock time and date at job start Mon Mar 30 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86794 * 119.99823 * 2 1 4 4 H 1.48504 * 109.47202 * 269.99741 * 3 2 1 5 5 H 1.48500 * 109.47459 * 29.99671 * 3 2 1 6 6 H 1.48501 * 109.47262 * 149.99954 * 3 2 1 7 7 C 1.40048 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99714 * 165.86177 * 7 2 1 9 9 C 1.41447 * 120.00385 * 346.13583 * 7 2 1 10 10 C 1.41153 * 120.99156 * 335.39400 * 9 7 2 11 11 C 1.37694 * 119.08784 * 179.74897 * 10 9 7 12 12 N 1.31941 * 121.20536 * 0.54151 * 11 10 9 13 13 C 1.32753 * 122.23107 * 359.71458 * 12 11 10 14 14 C 1.48344 * 119.62506 * 180.02562 * 13 12 11 15 15 C 1.39368 * 120.11805 * 144.74427 * 14 13 12 16 16 C 1.38017 * 119.86925 * 179.74140 * 15 14 13 17 17 C 1.38320 * 120.12301 * 0.50726 * 16 15 14 18 18 C 1.38329 * 120.25410 * 359.77015 * 17 16 15 19 19 C 1.38011 * 120.11833 * 359.97438 * 18 17 16 20 20 C 1.39094 * 120.74325 * 0.02562 * 13 12 11 21 21 Cl 1.73600 * 120.63792 * 179.97438 * 20 13 12 22 22 H 0.97001 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.45629 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.39566 * 180.25059 * 11 10 9 25 25 H 1.07996 * 120.06870 * 0.02562 * 15 14 13 26 26 H 1.07998 * 119.93719 * 180.27989 * 16 15 14 27 27 H 1.08001 * 119.87308 * 179.74314 * 17 16 15 28 28 H 1.07996 * 119.94119 * 179.97438 * 18 17 16 29 29 H 1.08000 * 120.06315 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5389 1.4402 0.7000 7 6 2.0076 -1.2129 0.0005 8 1 3.0631 -1.2271 -0.2279 9 6 1.3314 -2.4199 0.2946 10 6 0.1495 -2.4214 1.0664 11 6 -0.4798 -3.6186 1.3246 12 7 0.0079 -4.7585 0.8734 13 6 1.1180 -4.8158 0.1477 14 6 1.6144 -6.1294 -0.3306 15 6 2.2318 -6.2324 -1.5758 16 6 2.6966 -7.4561 -2.0134 17 6 2.5412 -8.5807 -1.2232 18 6 1.9240 -8.4853 0.0112 19 6 1.4602 -7.2658 0.4611 20 6 1.8209 -3.6581 -0.1693 21 17 3.2726 -3.7363 -1.1179 22 1 -0.4850 0.8401 -0.0004 23 1 -0.2580 -1.4958 1.4453 24 1 -1.3866 -3.6251 1.9112 25 1 2.3504 -5.3557 -2.1952 26 1 3.1792 -7.5364 -2.9762 27 1 2.9027 -9.5370 -1.5714 28 1 1.8050 -9.3666 0.6238 29 1 0.9789 -7.1923 1.4251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309168005.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:37 Heat of formation + Delta-G solvation = 24.197674 kcal Electronic energy + Delta-G solvation = -16038.491631 eV Core-core repulsion = 13336.959225 eV Total energy + Delta-G solvation = -2701.532406 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71190 -39.32465 -37.07300 -36.15670 -33.23600 -32.54519 -31.71821 -29.79037 -27.97681 -24.53704 -23.90654 -22.72776 -22.09095 -19.46942 -17.95667 -17.25652 -16.89878 -16.58633 -16.25298 -15.53482 -15.42598 -14.69464 -14.41106 -14.33170 -14.18689 -13.49297 -13.25647 -13.21388 -12.91881 -12.66655 -12.27236 -12.16593 -11.96392 -11.83109 -11.37566 -11.09857 -10.26048 -10.03018 -9.85720 -9.70079 -8.97643 -8.76898 -6.66961 0.04457 0.59855 0.72397 1.07411 1.37350 1.49045 1.54187 1.70259 2.14611 2.63133 3.00549 3.48454 3.60835 4.09609 4.21717 4.28232 4.37591 4.63349 4.67248 4.75619 4.87410 4.97667 5.09926 5.22047 5.24137 5.32243 5.62016 5.65978 5.72162 5.79705 6.01676 6.19179 6.34199 6.59360 6.66407 7.50083 8.14293 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.033834 B = 0.006409 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.380624 B = 4367.505384 C = 5036.793062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.040 3.960 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.258 1.258 7 C -0.461 4.461 8 H 0.088 0.912 9 C 0.105 3.895 10 C -0.223 4.223 11 C 0.085 3.915 12 N -0.564 5.564 13 C 0.169 3.831 14 C -0.058 4.058 15 C -0.117 4.117 16 C -0.129 4.129 17 C -0.112 4.112 18 C -0.127 4.127 19 C -0.102 4.102 20 C -0.194 4.194 21 Cl -0.080 7.080 22 H 0.297 0.703 23 H 0.130 0.870 24 H 0.157 0.843 25 H 0.122 0.878 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.842 -7.222 -1.499 8.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.106 0.894 9 C 0.097 3.903 10 C -0.246 4.246 11 C -0.066 4.066 12 N -0.279 5.279 13 C 0.033 3.967 14 C -0.059 4.059 15 C -0.136 4.136 16 C -0.147 4.147 17 C -0.130 4.130 18 C -0.145 4.145 19 C -0.121 4.121 20 C -0.226 4.226 21 Cl -0.052 7.052 22 H 0.108 0.892 23 H 0.147 0.853 24 H 0.174 0.826 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.169 0.831 29 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.264 -7.838 -1.364 8.599 hybrid contribution 0.507 1.904 -0.163 1.978 sum 3.771 -5.934 -1.527 7.195 Atomic orbital electron populations 1.69767 1.09054 1.31546 1.32433 1.26867 0.95603 1.04718 0.90714 0.85116 0.79159 0.75285 0.79802 1.18521 1.18404 1.18139 1.19926 0.97561 0.90946 1.40681 0.89390 1.18003 0.91897 0.91756 0.88639 1.22304 0.99559 0.98891 1.03844 1.22484 0.98863 0.87908 0.97301 1.67615 1.13640 1.29517 1.17127 1.19596 0.91290 0.91410 0.94409 1.18737 1.00047 0.91375 0.95695 1.21777 0.97328 0.99307 0.95196 1.21364 1.00446 0.91769 1.01087 1.21582 0.98133 0.99358 0.93951 1.21386 0.98771 0.97036 0.97296 1.21291 0.98884 0.92288 0.99625 1.22017 0.95183 0.95604 1.09778 1.98164 1.37479 1.98057 1.71471 0.89188 0.85263 0.82574 0.86064 0.83549 0.82501 0.83108 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.94 10.80 21.84 0.24 -38.70 15 2 C 0.04 1.87 5.25 85.29 0.45 2.32 15 3 Si 0.99 35.75 29.58 68.60 2.03 37.78 15 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 15 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 7 C -0.46 -23.72 8.63 23.50 0.20 -23.52 15 8 H 0.09 4.43 7.19 -2.91 -0.02 4.41 15 9 C 0.11 5.59 5.61 -21.10 -0.12 5.47 15 10 C -0.22 -11.40 8.78 22.86 0.20 -11.20 15 11 C 0.08 4.01 11.15 84.55 0.94 4.95 15 12 N -0.56 -27.37 9.93 -185.29 -1.84 -29.21 15 13 C 0.17 8.15 6.48 41.90 0.27 8.42 15 14 C -0.06 -2.38 5.57 -20.04 -0.11 -2.49 15 15 C -0.12 -4.30 8.17 22.49 0.18 -4.11 15 16 C -0.13 -3.61 10.03 22.24 0.22 -3.39 15 17 C -0.11 -2.71 10.04 22.31 0.22 -2.49 15 18 C -0.13 -3.42 10.03 22.24 0.22 -3.19 15 19 C -0.10 -3.62 9.58 22.49 0.22 -3.41 15 20 C -0.19 -9.75 6.34 23.15 0.15 -9.60 15 21 Cl -0.08 -3.49 23.50 -2.72 -0.06 -3.56 15 22 H 0.30 12.80 8.29 -92.71 -0.77 12.03 15 23 H 0.13 6.62 6.13 -2.91 -0.02 6.61 15 24 H 0.16 6.24 8.06 -2.91 -0.02 6.21 15 25 H 0.12 4.69 5.56 -2.91 -0.02 4.68 15 26 H 0.15 3.18 8.06 -2.91 -0.02 3.16 15 27 H 0.16 2.50 8.06 -2.91 -0.02 2.48 15 28 H 0.15 2.98 8.06 -2.91 -0.02 2.96 15 29 H 0.12 4.19 7.96 -2.91 -0.02 4.17 15 Total: -1.00 -58.99 268.15 4.59 -54.40 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 1.18 Total: 21.56 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 3.05 Total: -42.26 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -1.60 Total: -67.92 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.78 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.06 Total: -3.56 kcal Total: -58.99 4.59 -54.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309168005.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.596 kcal (2) G-P(sol) polarization free energy of solvation -58.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds