Wall clock time and date at job start Mon Mar 30 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86793 * 120.00126 * 2 1 4 4 H 1.48509 * 109.47322 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47389 * 30.00078 * 3 2 1 6 6 H 1.48498 * 109.47474 * 150.00315 * 3 2 1 7 7 C 1.40042 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00186 * 197.29030 * 7 2 1 9 9 C 1.41543 * 119.99823 * 17.29019 * 7 2 1 10 10 C 1.41086 * 120.97940 * 23.17307 * 9 7 2 11 11 C 1.37925 * 119.05861 * 180.02562 * 10 9 7 12 12 Cl 1.73596 * 119.44103 * 179.97438 * 11 10 9 13 13 N 1.32010 * 121.11859 * 359.74610 * 11 10 9 14 14 C 1.32812 * 122.18894 * 0.52454 * 13 11 10 15 15 C 1.48368 * 119.59891 * 179.74834 * 14 13 11 16 16 C 1.39349 * 120.12412 * 359.72825 * 15 14 13 17 17 C 1.38019 * 119.87494 * 179.97438 * 16 15 14 18 18 C 1.38326 * 120.11923 * 359.97438 * 17 16 15 19 19 C 1.38315 * 120.25197 * 0.02562 * 18 17 16 20 20 C 1.38019 * 120.12342 * 0.02562 * 19 18 17 21 21 C 1.38858 * 120.79467 * 359.47800 * 14 13 11 22 22 H 0.96994 * 120.00174 * 359.97438 * 1 2 3 23 23 H 1.07993 * 120.47060 * 0.04520 * 10 9 7 24 24 H 1.07998 * 120.06087 * 0.02562 * 16 15 14 25 25 H 1.07991 * 119.93638 * 179.97438 * 17 16 15 26 26 H 1.08000 * 119.87053 * 179.74567 * 18 17 16 27 27 H 1.08001 * 119.94014 * 179.97438 * 19 18 17 28 28 H 1.08000 * 120.06490 * 180.02562 * 20 19 18 29 29 H 1.08005 * 120.60643 * 180.27333 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6527 0.7000 6 1 3.5390 1.4401 0.6999 7 6 2.0076 -1.2128 -0.0005 8 1 3.0509 -1.2341 0.2774 9 6 1.3478 -2.4107 -0.3654 10 6 0.1905 -2.3857 -1.1720 11 6 -0.4210 -3.5768 -1.5033 12 17 -1.8459 -3.5575 -2.4947 13 7 0.0613 -4.7314 -1.0828 14 6 1.1441 -4.8093 -0.3177 15 6 1.6333 -6.1377 0.1268 16 6 0.9562 -7.2951 -0.2525 17 6 1.4161 -8.5281 0.1635 18 6 2.5471 -8.6162 0.9550 19 6 3.2231 -7.4707 1.3344 20 6 2.7716 -6.2324 0.9252 21 6 1.8270 -3.6630 0.0667 22 1 -0.4850 0.8400 0.0004 23 1 -0.2105 -1.4473 -1.5254 24 1 0.0738 -7.2274 -0.8715 25 1 0.8920 -9.4257 -0.1295 26 1 2.9011 -9.5829 1.2816 27 1 4.1053 -7.5454 1.9529 28 1 3.3003 -5.3385 1.2217 29 1 2.7097 -3.7302 0.6854 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309187569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:51 Heat of formation + Delta-G solvation = 18.500484 kcal Electronic energy + Delta-G solvation = -15752.199229 eV Core-core repulsion = 13050.419775 eV Total energy + Delta-G solvation = -2701.779454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.76878 -39.36084 -37.33494 -36.14583 -33.19996 -32.87145 -31.67871 -29.73688 -28.03927 -24.70584 -24.02333 -22.46690 -22.08419 -19.55160 -17.98733 -17.19513 -16.91070 -16.67477 -16.08983 -15.43840 -15.22720 -15.08041 -14.53519 -14.34421 -14.16592 -13.65705 -13.34260 -13.07890 -12.82125 -12.43544 -12.28158 -12.09824 -11.96955 -11.89691 -11.78571 -11.32607 -10.34243 -10.13491 -10.07244 -9.78105 -8.95058 -8.77173 -6.68365 -0.05239 0.57490 0.67815 1.12229 1.15165 1.39426 1.53908 1.55813 2.15129 2.58343 3.02970 3.55584 3.62147 4.05936 4.21401 4.32655 4.46789 4.63781 4.66777 4.78183 4.86497 4.98973 5.11302 5.14787 5.22371 5.28676 5.58091 5.64443 5.75290 5.80599 5.97801 6.17739 6.31109 6.61499 6.67716 7.34923 8.14815 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.006452 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.426556 B = 4338.488377 C = 5679.879702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.037 3.963 3 Si 0.992 3.008 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.470 4.470 8 H 0.095 0.905 9 C 0.107 3.893 10 C -0.218 4.218 11 C 0.173 3.827 12 Cl -0.067 7.067 13 N -0.578 5.578 14 C 0.171 3.829 15 C -0.057 4.057 16 C -0.107 4.107 17 C -0.127 4.127 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.269 4.269 22 H 0.297 0.703 23 H 0.126 0.874 24 H 0.114 0.886 25 H 0.147 0.853 26 H 0.158 0.842 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 -7.311 1.810 8.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.500 4.500 8 H 0.113 0.887 9 C 0.099 3.901 10 C -0.242 4.242 11 C 0.014 3.986 12 Cl -0.038 7.038 13 N -0.296 5.296 14 C 0.038 3.962 15 C -0.058 4.058 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.132 4.132 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.292 4.292 22 H 0.108 0.892 23 H 0.144 0.856 24 H 0.132 0.868 25 H 0.165 0.835 26 H 0.175 0.825 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.909 -7.938 1.478 8.971 hybrid contribution -0.019 1.758 -0.100 1.761 sum 3.891 -6.180 1.378 7.431 Atomic orbital electron populations 1.69797 1.09401 1.31688 1.32020 1.26967 0.95514 1.05096 0.90594 0.85044 0.79167 0.74918 0.79754 1.18568 1.19084 1.17487 1.19977 0.98751 0.91268 1.39960 0.88666 1.18074 0.90454 0.93650 0.87904 1.21939 1.01199 0.96400 1.04667 1.21259 0.90453 0.90659 0.96238 1.98271 1.38472 1.98670 1.68431 1.66545 1.16327 1.27665 1.19070 1.19506 0.90398 0.93045 0.93220 1.18817 0.96743 0.90801 0.99410 1.21360 0.99564 0.92331 0.99311 1.21411 0.97554 0.96950 0.98558 1.21613 0.94853 0.99684 0.97068 1.21405 1.00925 0.91329 1.00264 1.21446 0.95277 0.99494 0.97259 1.22123 1.05542 0.92330 1.09204 0.89211 0.85591 0.86767 0.83513 0.82476 0.82797 0.85452 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.70 10.90 21.84 0.24 -39.46 15 2 C 0.04 1.74 5.19 85.29 0.44 2.18 15 3 Si 0.99 34.99 29.59 68.60 2.03 37.02 15 4 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 5 H -0.27 -8.97 7.11 99.48 0.71 -8.26 15 6 H -0.25 -8.50 7.11 99.48 0.71 -7.79 15 7 C -0.47 -23.57 9.12 23.52 0.21 -23.35 15 8 H 0.10 4.46 7.90 -2.91 -0.02 4.44 15 9 C 0.11 5.65 5.61 -21.12 -0.12 5.53 15 10 C -0.22 -11.57 8.55 22.89 0.20 -11.38 15 11 C 0.17 8.76 7.26 84.59 0.61 9.37 15 12 Cl -0.07 -2.87 29.09 -2.72 -0.08 -2.95 15 13 N -0.58 -28.94 9.37 -176.31 -1.65 -30.59 15 14 C 0.17 8.10 6.73 41.84 0.28 8.38 15 15 C -0.06 -2.24 5.88 -20.04 -0.12 -2.36 15 16 C -0.11 -3.77 9.57 22.49 0.22 -3.56 15 17 C -0.13 -3.34 10.03 22.24 0.22 -3.11 15 18 C -0.11 -2.55 10.04 22.31 0.22 -2.32 15 19 C -0.12 -2.98 10.03 22.24 0.22 -2.76 15 20 C -0.12 -3.77 9.41 22.49 0.21 -3.55 15 21 C -0.27 -13.08 9.25 23.06 0.21 -12.86 15 22 H 0.30 13.10 8.29 -92.71 -0.77 12.33 15 23 H 0.13 6.84 6.16 -2.91 -0.02 6.83 15 24 H 0.11 4.33 7.53 -2.91 -0.02 4.31 15 25 H 0.15 2.93 8.06 -2.92 -0.02 2.91 15 26 H 0.16 2.25 8.06 -2.91 -0.02 2.23 15 27 H 0.15 2.69 8.06 -2.91 -0.02 2.66 15 28 H 0.13 4.00 6.17 -2.91 -0.02 3.98 15 29 H 0.13 5.58 6.18 -2.91 -0.02 5.57 15 Total: -1.00 -59.44 273.37 4.54 -54.90 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 1.18 Total: 20.87 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 2.82 Total: -39.79 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -1.41 Total: -70.05 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 17 Polarization: -2.87 SS G_CDS: -0.08 Total: -2.95 kcal Total: -59.44 4.54 -54.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309187569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.398 kcal (2) G-P(sol) polarization free energy of solvation -59.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds