Wall clock time and date at job start Mon Mar 30 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48500 * 109.46938 * 275.40452 * 3 2 1 5 5 H 1.48495 * 109.46839 * 35.40074 * 3 2 1 6 6 H 1.48500 * 109.47376 * 155.40715 * 3 2 1 7 7 C 1.40050 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99936 * 342.24614 * 7 2 1 9 9 C 1.41460 * 120.00002 * 162.24313 * 7 2 1 10 10 C 1.40881 * 120.99716 * 330.05369 * 9 7 2 11 11 C 1.38804 * 118.78660 * 179.97438 * 10 9 7 12 12 C 1.48372 * 119.58857 * 180.02562 * 11 10 9 13 13 C 1.39342 * 120.12355 * 359.72516 * 12 11 10 14 14 C 1.38017 * 119.87983 * 179.79354 * 13 12 11 15 15 C 1.38327 * 120.11698 * 0.46112 * 14 13 12 16 16 C 1.38319 * 120.24854 * 359.79030 * 15 14 13 17 17 C 1.38017 * 120.12471 * 359.97438 * 16 15 14 18 18 N 1.32842 * 120.82480 * 359.97438 * 11 10 9 19 19 C 1.31844 * 122.22628 * 0.02562 * 18 11 10 20 20 C 1.37990 * 121.12354 * 359.97438 * 19 18 11 21 21 Cl 1.73602 * 120.48219 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 23 23 H 1.08006 * 120.61098 * 359.95877 * 10 9 7 24 24 H 1.08009 * 120.06164 * 0.02562 * 13 12 11 25 25 H 1.07994 * 119.94275 * 180.22998 * 14 13 12 26 26 H 1.08001 * 119.87131 * 179.77111 * 15 14 13 27 27 H 1.08002 * 119.94146 * 180.02562 * 16 15 14 28 28 H 1.07990 * 120.06393 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.43584 * 180.27957 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3747 2.1123 -1.3939 5 1 1.5006 2.6169 0.8110 6 1 3.5914 1.4099 0.5827 7 6 2.0076 -1.2129 -0.0005 8 1 1.5062 -2.1261 0.2843 9 6 3.3717 -1.2419 -0.3742 10 6 3.8905 -0.3144 -1.2991 11 6 5.2361 -0.3843 -1.6325 12 6 5.8013 0.5840 -2.6042 13 6 4.9836 1.5532 -3.1818 14 6 5.5156 2.4541 -4.0819 15 6 6.8558 2.3901 -4.4181 16 6 7.6710 1.4268 -3.8518 17 6 7.1507 0.5239 -2.9469 18 7 6.0243 -1.3067 -1.0917 19 6 5.5773 -2.1919 -0.2229 20 6 4.2545 -2.2009 0.1697 21 17 3.6838 -3.3737 1.3154 22 1 -0.4850 0.8401 -0.0004 23 1 3.2529 0.4371 -1.7408 24 1 3.9361 1.6017 -2.9228 25 1 4.8835 3.2081 -4.5274 26 1 7.2671 3.0948 -5.1257 27 1 8.7169 1.3817 -4.1176 28 1 7.7882 -0.2275 -2.5050 29 1 6.2591 -2.9194 0.1922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309200426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:54 Heat of formation + Delta-G solvation = 34.186326 kcal Electronic energy + Delta-G solvation = -16087.263992 eV Core-core repulsion = 13386.164727 eV Total energy + Delta-G solvation = -2701.099265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.39847 -38.03923 -35.38000 -34.25698 -32.00440 -31.63889 -30.56355 -28.33512 -26.15909 -23.32662 -22.65451 -21.43498 -20.29219 -17.93322 -16.77237 -15.88236 -15.52831 -15.26978 -14.59273 -14.01689 -13.84037 -13.44887 -13.31792 -13.02695 -12.91427 -12.36507 -11.82137 -11.40724 -11.15773 -11.09307 -10.97107 -10.76091 -10.69228 -10.08356 -9.99576 -9.58271 -8.96616 -8.65968 -8.45485 -8.30540 -7.42282 -7.24604 -4.89472 1.20074 1.69921 2.35490 2.45650 2.91628 3.03511 3.14008 3.37847 3.74693 4.02400 4.45771 4.91318 5.13158 5.17758 5.19182 5.38620 5.62557 5.74627 5.82358 6.13378 6.14249 6.23935 6.36849 6.59190 6.68552 6.71797 6.75488 6.82745 7.05411 7.21027 7.33894 7.61819 8.03692 8.15726 8.43241 9.05245 9.74844 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.008498 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.254569 B = 3294.125708 C = 4573.757910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.087 3.913 3 Si 0.904 3.096 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.242 1.242 7 C -0.417 4.417 8 H 0.106 0.894 9 C 0.109 3.891 10 C -0.256 4.256 11 C 0.170 3.830 12 C -0.025 4.025 13 C -0.111 4.111 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.130 4.130 17 C -0.087 4.087 18 N -0.555 5.555 19 C 0.134 3.866 20 C -0.174 4.174 21 Cl -0.096 7.096 22 H 0.292 0.708 23 H 0.118 0.882 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.479 3.966 -4.299 9.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.136 4.136 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.166 1.166 7 C -0.446 4.446 8 H 0.124 0.876 9 C 0.100 3.900 10 C -0.279 4.279 11 C 0.040 3.960 12 C -0.025 4.025 13 C -0.130 4.130 14 C -0.144 4.144 15 C -0.145 4.145 16 C -0.148 4.148 17 C -0.106 4.106 18 N -0.270 5.270 19 C -0.021 4.021 20 C -0.205 4.205 21 Cl -0.068 7.068 22 H 0.103 0.897 23 H 0.135 0.865 24 H 0.143 0.857 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.027 3.919 -4.416 9.964 hybrid contribution -0.904 0.617 0.369 1.155 sum 7.122 4.536 -4.047 9.364 Atomic orbital electron populations 1.69624 1.08172 1.31005 1.31592 1.26223 0.94799 1.01885 0.90670 0.86413 0.81602 0.79590 0.79479 1.18879 1.20918 1.16551 1.19623 0.92073 0.96746 1.36125 0.87591 1.17652 0.93257 0.89510 0.89548 1.21857 0.95595 1.05689 1.04731 1.19219 0.89967 0.92770 0.94086 1.18759 0.93554 0.94536 0.95690 1.21397 1.00152 0.94776 0.96677 1.21001 0.95475 0.99281 0.98609 1.21120 0.94025 0.98946 1.00374 1.21090 0.99580 0.96082 0.98055 1.21341 0.94757 0.98266 0.96227 1.67487 1.37435 1.07320 1.14764 1.21942 0.91586 0.95475 0.93113 1.21891 0.94654 1.01118 1.02870 1.98233 1.90090 1.58185 1.60290 0.89745 0.86497 0.85721 0.86222 0.86529 0.86294 0.84820 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.39 13.92 55.55 0.77 -18.62 15 2 C 0.09 2.15 5.43 -17.34 -0.09 2.05 15 3 Si 0.90 19.56 24.54 -169.99 -4.17 15.39 15 4 H -0.26 -5.33 6.19 56.52 0.35 -4.98 15 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 15 6 H -0.24 -5.55 6.84 56.52 0.39 -5.16 15 7 C -0.42 -10.66 9.05 -37.68 -0.34 -11.00 15 8 H 0.11 2.85 7.52 -52.48 -0.39 2.46 15 9 C 0.11 2.67 5.12 -106.53 -0.55 2.12 15 10 C -0.26 -5.99 6.61 -38.37 -0.25 -6.24 15 11 C 0.17 3.79 6.72 -83.05 -0.56 3.23 15 12 C -0.02 -0.48 5.88 -104.90 -0.62 -1.09 15 13 C -0.11 -1.97 9.41 -39.25 -0.37 -2.34 15 14 C -0.13 -1.83 10.03 -39.63 -0.40 -2.23 15 15 C -0.13 -1.68 10.04 -39.52 -0.40 -2.07 15 16 C -0.13 -1.82 10.03 -39.63 -0.40 -2.22 15 17 C -0.09 -1.48 9.57 -39.25 -0.38 -1.86 15 18 N -0.56 -12.22 9.39 -9.91 -0.09 -12.31 15 19 C 0.13 2.86 10.96 -17.64 -0.19 2.67 15 20 C -0.17 -3.97 6.40 -38.53 -0.25 -4.22 15 21 Cl -0.10 -1.99 27.84 -51.86 -1.44 -3.43 15 22 H 0.29 6.49 8.29 -40.82 -0.34 6.15 15 23 H 0.12 2.65 2.98 -52.48 -0.16 2.49 15 24 H 0.12 2.26 5.64 -52.48 -0.30 1.96 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.00 15 26 H 0.12 1.19 8.06 -52.49 -0.42 0.77 15 27 H 0.12 1.32 8.06 -52.49 -0.42 0.89 15 28 H 0.13 2.24 7.53 -52.49 -0.40 1.85 15 29 H 0.14 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -26.26 265.29 -7.86 -34.12 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -2.13 Total: 4.05 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -4.79 Total: -23.19 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.68 Total: -30.93 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.17 Total: 15.39 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -1.44 Total: -3.43 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -26.26 -7.86 -34.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309200426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.308 kcal (2) G-P(sol) polarization free energy of solvation -26.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds