Wall clock time and date at job start Mon Mar 30 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86800 * 120.00156 * 2 1 4 4 H 1.48500 * 109.46938 * 275.40452 * 3 2 1 5 5 H 1.48495 * 109.46839 * 35.40074 * 3 2 1 6 6 H 1.48500 * 109.47376 * 155.40715 * 3 2 1 7 7 C 1.40050 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99936 * 342.24614 * 7 2 1 9 9 C 1.41460 * 120.00002 * 162.24313 * 7 2 1 10 10 C 1.40881 * 120.99716 * 330.05369 * 9 7 2 11 11 C 1.38804 * 118.78660 * 179.97438 * 10 9 7 12 12 C 1.48372 * 119.58857 * 180.02562 * 11 10 9 13 13 C 1.39342 * 120.12355 * 359.72516 * 12 11 10 14 14 C 1.38017 * 119.87983 * 179.79354 * 13 12 11 15 15 C 1.38327 * 120.11698 * 0.46112 * 14 13 12 16 16 C 1.38319 * 120.24854 * 359.79030 * 15 14 13 17 17 C 1.38017 * 120.12471 * 359.97438 * 16 15 14 18 18 N 1.32842 * 120.82480 * 359.97438 * 11 10 9 19 19 C 1.31844 * 122.22628 * 0.02562 * 18 11 10 20 20 C 1.37990 * 121.12354 * 359.97438 * 19 18 11 21 21 Cl 1.73602 * 120.48219 * 180.02562 * 20 19 18 22 22 H 0.97000 * 119.99811 * 0.02562 * 1 2 3 23 23 H 1.08006 * 120.61098 * 359.95877 * 10 9 7 24 24 H 1.08009 * 120.06164 * 0.02562 * 13 12 11 25 25 H 1.07994 * 119.94275 * 180.22998 * 14 13 12 26 26 H 1.08001 * 119.87131 * 179.77111 * 15 14 13 27 27 H 1.08002 * 119.94146 * 180.02562 * 16 15 14 28 28 H 1.07990 * 120.06393 * 180.02562 * 17 16 15 29 29 H 1.07997 * 119.43584 * 180.27957 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3747 2.1123 -1.3939 5 1 1.5006 2.6169 0.8110 6 1 3.5914 1.4099 0.5827 7 6 2.0076 -1.2129 -0.0005 8 1 1.5062 -2.1261 0.2843 9 6 3.3717 -1.2419 -0.3742 10 6 3.8905 -0.3144 -1.2991 11 6 5.2361 -0.3843 -1.6325 12 6 5.8013 0.5840 -2.6042 13 6 4.9836 1.5532 -3.1818 14 6 5.5156 2.4541 -4.0819 15 6 6.8558 2.3901 -4.4181 16 6 7.6710 1.4268 -3.8518 17 6 7.1507 0.5239 -2.9469 18 7 6.0243 -1.3067 -1.0917 19 6 5.5773 -2.1919 -0.2229 20 6 4.2545 -2.2009 0.1697 21 17 3.6838 -3.3737 1.3154 22 1 -0.4850 0.8401 -0.0004 23 1 3.2529 0.4371 -1.7408 24 1 3.9361 1.6017 -2.9228 25 1 4.8835 3.2081 -4.5274 26 1 7.2671 3.0948 -5.1257 27 1 8.7169 1.3817 -4.1176 28 1 7.7882 -0.2275 -2.5050 29 1 6.2591 -2.9194 0.1922 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309200426.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:54 Heat of formation + Delta-G solvation = 20.562056 kcal Electronic energy + Delta-G solvation = -16087.854785 eV Core-core repulsion = 13386.164727 eV Total energy + Delta-G solvation = -2701.690058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95010 -39.44412 -37.08830 -36.08428 -33.50007 -33.37067 -31.79094 -29.83670 -27.97927 -24.87001 -24.14461 -22.82328 -21.83346 -19.66712 -18.30933 -17.45556 -17.14209 -16.75015 -16.26373 -15.38493 -15.27889 -15.12506 -14.90016 -14.56544 -14.17687 -13.76859 -13.51790 -13.12308 -12.88911 -12.74308 -12.61177 -12.14270 -11.93487 -11.81260 -11.72218 -11.36311 -10.38772 -10.24818 -10.08819 -9.84245 -9.09609 -8.97350 -6.80480 -0.24971 0.51376 0.57803 0.90034 1.17116 1.32047 1.37992 1.62734 1.99148 2.46318 2.92295 3.38023 3.42118 3.88284 4.10416 4.14936 4.27768 4.34279 4.42981 4.60653 4.73019 4.86888 4.90540 5.04330 5.08805 5.19163 5.38836 5.58751 5.59626 5.71529 5.89004 6.07566 6.13198 6.30589 6.53644 7.30086 7.96376 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.008498 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.254569 B = 3294.125708 C = 4573.757910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.061 3.939 3 Si 0.947 3.053 4 H -0.243 1.243 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.448 4.448 8 H 0.079 0.921 9 C 0.097 3.903 10 C -0.274 4.274 11 C 0.170 3.830 12 C -0.064 4.064 13 C -0.128 4.128 14 C -0.125 4.125 15 C -0.109 4.109 16 C -0.124 4.124 17 C -0.096 4.096 18 N -0.555 5.555 19 C 0.136 3.864 20 C -0.192 4.192 21 Cl -0.083 7.083 22 H 0.302 0.698 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.149 0.851 26 H 0.160 0.840 27 H 0.155 0.845 28 H 0.129 0.871 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.833 5.884 -6.023 12.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.159 4.159 3 Si 0.770 3.230 4 H -0.168 1.168 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.478 4.478 8 H 0.097 0.903 9 C 0.089 3.911 10 C -0.297 4.297 11 C 0.039 3.961 12 C -0.065 4.065 13 C -0.147 4.147 14 C -0.142 4.142 15 C -0.127 4.127 16 C -0.141 4.141 17 C -0.115 4.115 18 N -0.269 5.269 19 C -0.019 4.019 20 C -0.223 4.223 21 Cl -0.054 7.054 22 H 0.114 0.886 23 H 0.137 0.863 24 H 0.129 0.871 25 H 0.167 0.833 26 H 0.177 0.823 27 H 0.172 0.828 28 H 0.147 0.853 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.363 5.832 -6.144 13.385 hybrid contribution -1.447 -0.009 0.813 1.660 sum 8.916 5.823 -5.330 11.908 Atomic orbital electron populations 1.69625 1.08939 1.32293 1.32915 1.26726 0.95300 1.03744 0.90121 0.85761 0.79394 0.77256 0.80565 1.16794 1.19196 1.18960 1.19540 0.92972 0.96507 1.38781 0.90253 1.17875 0.93177 0.90405 0.89688 1.21952 0.96497 1.06065 1.05168 1.19746 0.89667 0.92833 0.93894 1.18806 0.95107 0.95503 0.97064 1.21450 0.99580 0.95657 0.97978 1.21375 0.96732 0.98783 0.97357 1.21641 0.93137 0.98478 0.99464 1.21493 1.01429 0.94818 0.96384 1.21423 0.93669 0.99187 0.97193 1.67615 1.37403 1.07282 1.14633 1.22447 0.91495 0.95571 0.92414 1.22108 0.95239 1.01416 1.03524 1.98225 1.90092 1.57444 1.59688 0.88647 0.86268 0.87099 0.83317 0.82277 0.82771 0.85335 0.81373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.51 13.92 21.84 0.30 -41.21 15 2 C 0.06 3.10 5.43 85.30 0.46 3.56 15 3 Si 0.95 40.66 24.54 68.60 1.68 42.35 15 4 H -0.24 -9.54 6.19 99.48 0.62 -8.92 15 5 H -0.27 -10.57 7.11 99.48 0.71 -9.87 15 6 H -0.27 -12.27 6.84 99.48 0.68 -11.59 15 7 C -0.45 -23.98 9.05 23.50 0.21 -23.77 15 8 H 0.08 4.54 7.52 -2.91 -0.02 4.51 15 9 C 0.10 4.89 5.12 -21.10 -0.11 4.78 15 10 C -0.27 -13.08 6.61 23.05 0.15 -12.93 15 11 C 0.17 7.57 6.72 41.83 0.28 7.85 15 12 C -0.06 -2.42 5.88 -20.04 -0.12 -2.54 15 13 C -0.13 -4.33 9.41 22.48 0.21 -4.12 15 14 C -0.12 -3.16 10.03 22.24 0.22 -2.94 15 15 C -0.11 -2.32 10.04 22.31 0.22 -2.10 15 16 C -0.12 -2.91 10.03 22.24 0.22 -2.69 15 17 C -0.10 -3.05 9.57 22.49 0.22 -2.83 15 18 N -0.55 -24.18 9.39 -185.26 -1.74 -25.92 15 19 C 0.14 5.74 10.96 84.63 0.93 6.67 15 20 C -0.19 -8.88 6.40 22.95 0.15 -8.73 15 21 Cl -0.08 -3.47 27.84 -2.72 -0.08 -3.54 15 22 H 0.30 13.67 8.29 -92.71 -0.77 12.90 15 23 H 0.12 5.51 2.98 -2.91 -0.01 5.50 15 24 H 0.11 3.97 5.64 -2.91 -0.02 3.95 15 25 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.16 2.11 8.06 -2.91 -0.02 2.09 15 27 H 0.15 2.55 8.06 -2.91 -0.02 2.52 15 28 H 0.13 4.11 7.53 -2.92 -0.02 4.09 15 29 H 0.17 5.88 8.06 -2.91 -0.02 5.86 15 Total: -1.00 -58.52 265.29 4.30 -54.22 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.07 Total: 13.88 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 3.06 Total: -39.78 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -1.44 Total: -67.13 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.68 Total: 42.35 kcal Atomic # 17 Polarization: -3.47 SS G_CDS: -0.08 Total: -3.54 kcal Total: -58.52 4.30 -54.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309200426.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.783 kcal (2) G-P(sol) polarization free energy of solvation -58.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds