Wall clock time and date at job start Mon Mar 30 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86795 * 120.00380 * 2 1 4 4 H 1.48498 * 109.47302 * 240.00457 * 3 2 1 5 5 H 1.48509 * 109.46734 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47285 * 119.99495 * 3 2 1 7 7 C 1.40182 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99633 * 163.64578 * 7 2 1 9 9 C 1.40931 * 120.00307 * 343.63910 * 7 2 1 10 10 C 1.41141 * 121.10058 * 335.46608 * 9 7 2 11 11 C 1.36460 * 119.14023 * 179.97438 * 10 9 7 12 12 N 1.32227 * 121.52662 * 359.97204 * 11 10 9 13 13 C 1.31768 * 122.48567 * 359.77431 * 12 11 10 14 14 Cl 1.73598 * 119.68797 * 180.24544 * 13 12 11 15 15 C 1.39482 * 120.62470 * 0.49706 * 13 12 11 16 16 C 1.47822 * 120.78984 * 179.77701 * 15 13 12 17 17 C 1.39688 * 120.15025 * 294.71544 * 16 15 13 18 18 C 1.37909 * 119.84741 * 180.02562 * 17 16 15 19 19 C 1.38412 * 120.15312 * 0.02656 * 18 17 16 20 20 C 1.38404 * 120.30620 * 0.25073 * 19 18 17 21 21 C 1.37924 * 120.14763 * 359.44599 * 20 19 18 22 22 H 0.96998 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.42891 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.23223 * 180.02562 * 11 10 9 25 25 H 1.08005 * 120.07692 * 0.04454 * 17 16 15 26 26 H 1.07996 * 119.92440 * 179.97438 * 18 17 16 27 27 H 1.07993 * 119.84712 * 179.97438 * 19 18 17 28 28 H 1.07992 * 119.92382 * 179.70709 * 20 19 18 29 29 H 1.08001 * 120.07056 * 180.27733 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2759 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0077 -1.2140 -0.0005 8 1 3.0550 -1.2328 -0.2639 9 6 1.3459 -2.4100 0.3427 10 6 0.1930 -2.3975 1.1569 11 6 -0.4164 -3.5791 1.4641 12 7 0.0478 -4.7334 1.0163 13 6 1.1155 -4.8169 0.2486 14 17 1.6581 -6.3707 -0.3036 15 6 1.8170 -3.6691 -0.1202 16 6 3.0181 -3.7589 -0.9772 17 6 4.1669 -4.4016 -0.5099 18 6 5.2841 -4.4814 -1.3145 19 6 5.2690 -3.9259 -2.5822 20 6 4.1361 -3.2827 -3.0494 21 6 3.0097 -3.2011 -2.2577 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2016 -1.4648 1.5320 24 1 -1.2989 -3.5712 2.0866 25 1 4.1801 -4.8354 0.4791 26 1 6.1731 -4.9776 -0.9543 27 1 6.1468 -3.9909 -3.2079 28 1 4.1327 -2.8474 -4.0377 29 1 2.1248 -2.7027 -2.6253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309201161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:27 Heat of formation + Delta-G solvation = 31.309671 kcal Electronic energy + Delta-G solvation = -16334.885528 eV Core-core repulsion = 13633.661522 eV Total energy + Delta-G solvation = -2701.224006 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02041 -37.74113 -35.61818 -34.32977 -32.15445 -30.36706 -30.12829 -28.24323 -26.19086 -22.77509 -22.00885 -21.41620 -20.24100 -17.84489 -16.36257 -15.87578 -15.08269 -14.84488 -14.72958 -14.15319 -13.51785 -13.03827 -12.89680 -12.70108 -12.59784 -12.03176 -11.73522 -11.46861 -11.32660 -10.85243 -10.70452 -10.49682 -10.44702 -10.30561 -10.00824 -9.60268 -8.48210 -8.30981 -8.21885 -7.95432 -7.51425 -7.07987 -4.82646 1.88704 2.08440 2.51786 2.56988 2.90487 2.91713 2.96924 3.07547 3.70020 4.38079 4.48251 5.30602 5.48267 5.55483 5.59379 5.75147 5.97483 6.13922 6.22007 6.52117 6.59126 6.66058 6.71344 6.79156 6.91772 7.09761 7.13128 7.18417 7.41162 7.55096 7.70849 7.77012 8.19226 8.43590 8.49459 9.23456 9.80372 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.010040 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.675055 B = 2788.280758 C = 4179.543086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.078 3.922 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.430 4.430 8 H 0.089 0.911 9 C 0.150 3.850 10 C -0.208 4.208 11 C 0.100 3.900 12 N -0.576 5.576 13 C 0.217 3.783 14 Cl -0.084 7.084 15 C -0.218 4.218 16 C 0.023 3.977 17 C -0.112 4.112 18 C -0.127 4.127 19 C -0.141 4.141 20 C -0.127 4.127 21 C -0.096 4.096 22 H 0.289 0.711 23 H 0.133 0.867 24 H 0.128 0.872 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.156 -0.991 -2.114 5.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.460 4.460 8 H 0.107 0.893 9 C 0.142 3.858 10 C -0.230 4.230 11 C -0.047 4.047 12 N -0.292 5.292 13 C 0.052 3.948 14 Cl -0.056 7.056 15 C -0.225 4.225 16 C 0.022 3.978 17 C -0.130 4.130 18 C -0.145 4.145 19 C -0.159 4.159 20 C -0.145 4.145 21 C -0.114 4.114 22 H 0.100 0.900 23 H 0.150 0.850 24 H 0.146 0.854 25 H 0.131 0.869 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.488 -1.722 -1.901 5.169 hybrid contribution 0.671 1.402 -0.266 1.576 sum 5.159 -0.320 -2.166 5.604 Atomic orbital electron populations 1.69719 1.07877 1.30382 1.31633 1.26073 0.94806 1.01888 0.91656 0.86234 0.80210 0.79235 0.80574 1.18452 1.19964 1.18381 1.19574 0.98048 0.90209 1.38119 0.89333 1.17668 0.90172 0.90576 0.87420 1.21979 1.00065 0.98492 1.02496 1.21564 0.98064 0.87380 0.97727 1.66511 1.15470 1.29817 1.17436 1.21182 0.93530 0.83946 0.96094 1.98295 1.88473 1.30808 1.88062 1.19156 1.01512 0.92443 1.09387 1.18495 0.92283 0.94417 0.92558 1.21256 0.92637 0.99737 0.99358 1.20892 0.97917 1.01023 0.94678 1.20970 0.97994 1.00605 0.96318 1.20962 0.93675 1.00387 0.99507 1.21300 0.98021 0.98564 0.93520 0.89997 0.84963 0.85427 0.86896 0.87085 0.87265 0.86986 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.89 10.93 55.56 0.61 -17.28 15 2 C 0.08 1.76 5.20 -17.31 -0.09 1.67 15 3 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 15 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 5 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.43 -10.34 8.12 -37.83 -0.31 -10.65 15 8 H 0.09 2.12 7.20 -52.48 -0.38 1.74 15 9 C 0.15 3.71 5.61 -106.26 -0.60 3.11 15 10 C -0.21 -5.01 8.73 -39.12 -0.34 -5.36 15 11 C 0.10 2.29 11.09 -18.02 -0.20 2.09 15 12 N -0.58 -13.85 10.30 -10.47 -0.11 -13.96 15 13 C 0.22 5.11 7.30 -17.12 -0.12 4.98 15 14 Cl -0.08 -1.72 27.52 -51.86 -1.43 -3.15 15 15 C -0.22 -5.15 5.39 -104.00 -0.56 -5.71 15 16 C 0.02 0.49 3.82 -104.90 -0.40 0.09 15 17 C -0.11 -2.12 8.91 -39.16 -0.35 -2.47 15 18 C -0.13 -2.08 10.03 -39.64 -0.40 -2.48 15 19 C -0.14 -2.21 10.04 -39.46 -0.40 -2.61 15 20 C -0.13 -2.15 10.03 -39.64 -0.40 -2.55 15 21 C -0.10 -1.91 9.00 -39.16 -0.35 -2.26 15 22 H 0.29 6.05 8.29 -40.82 -0.34 5.71 15 23 H 0.13 3.18 6.23 -52.49 -0.33 2.85 15 24 H 0.13 2.53 8.06 -52.49 -0.42 2.11 15 25 H 0.11 2.11 8.06 -52.48 -0.42 1.68 15 26 H 0.11 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.11 1.40 8.06 -52.49 -0.42 0.97 15 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 15 29 H 0.12 2.47 8.06 -52.49 -0.42 2.04 15 LS Contribution 272.99 15.07 4.11 4.11 Total: -1.00 -25.75 272.99 -8.73 -34.48 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -2.38 Total: 5.90 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -4.51 Total: -22.14 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.50 Total: -31.24 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.43 Total: -3.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.75 -8.73 -34.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.790 kcal (2) G-P(sol) polarization free energy of solvation -25.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds