Wall clock time and date at job start Mon Mar 30 2020 06:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86795 * 120.00380 * 2 1 4 4 H 1.48498 * 109.47302 * 240.00457 * 3 2 1 5 5 H 1.48509 * 109.46734 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47285 * 119.99495 * 3 2 1 7 7 C 1.40182 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99633 * 163.64578 * 7 2 1 9 9 C 1.40931 * 120.00307 * 343.63910 * 7 2 1 10 10 C 1.41141 * 121.10058 * 335.46608 * 9 7 2 11 11 C 1.36460 * 119.14023 * 179.97438 * 10 9 7 12 12 N 1.32227 * 121.52662 * 359.97204 * 11 10 9 13 13 C 1.31768 * 122.48567 * 359.77431 * 12 11 10 14 14 Cl 1.73598 * 119.68797 * 180.24544 * 13 12 11 15 15 C 1.39482 * 120.62470 * 0.49706 * 13 12 11 16 16 C 1.47822 * 120.78984 * 179.77701 * 15 13 12 17 17 C 1.39688 * 120.15025 * 294.71544 * 16 15 13 18 18 C 1.37909 * 119.84741 * 180.02562 * 17 16 15 19 19 C 1.38412 * 120.15312 * 0.02656 * 18 17 16 20 20 C 1.38404 * 120.30620 * 0.25073 * 19 18 17 21 21 C 1.37924 * 120.14763 * 359.44599 * 20 19 18 22 22 H 0.96998 * 119.99799 * 0.02562 * 1 2 3 23 23 H 1.07992 * 120.42891 * 359.97438 * 10 9 7 24 24 H 1.07997 * 119.23223 * 180.02562 * 11 10 9 25 25 H 1.08005 * 120.07692 * 0.04454 * 17 16 15 26 26 H 1.07996 * 119.92440 * 179.97438 * 18 17 16 27 27 H 1.07993 * 119.84712 * 179.97438 * 19 18 17 28 28 H 1.07992 * 119.92382 * 179.70709 * 20 19 18 29 29 H 1.08001 * 120.07056 * 180.27733 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0946 1.6963 -1.2125 5 1 1.2759 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0077 -1.2140 -0.0005 8 1 3.0550 -1.2328 -0.2639 9 6 1.3459 -2.4100 0.3427 10 6 0.1930 -2.3975 1.1569 11 6 -0.4164 -3.5791 1.4641 12 7 0.0478 -4.7334 1.0163 13 6 1.1155 -4.8169 0.2486 14 17 1.6581 -6.3707 -0.3036 15 6 1.8170 -3.6691 -0.1202 16 6 3.0181 -3.7589 -0.9772 17 6 4.1669 -4.4016 -0.5099 18 6 5.2841 -4.4814 -1.3145 19 6 5.2690 -3.9259 -2.5822 20 6 4.1361 -3.2827 -3.0494 21 6 3.0097 -3.2011 -2.2577 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2016 -1.4648 1.5320 24 1 -1.2989 -3.5712 2.0866 25 1 4.1801 -4.8354 0.4791 26 1 6.1731 -4.9776 -0.9543 27 1 6.1468 -3.9909 -3.2079 28 1 4.1327 -2.8474 -4.0377 29 1 2.1248 -2.7027 -2.6253 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309201161.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:27 Heat of formation + Delta-G solvation = 19.581261 kcal Electronic energy + Delta-G solvation = -16335.394110 eV Core-core repulsion = 13633.661522 eV Total energy + Delta-G solvation = -2701.732588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.67887 -39.25817 -37.33475 -36.08906 -33.76815 -32.03228 -31.59951 -29.86362 -27.96680 -24.39400 -23.64749 -22.95857 -21.80415 -19.61943 -17.82873 -17.60094 -16.77754 -16.43966 -16.28889 -15.64317 -15.12327 -14.68074 -14.49915 -14.24107 -14.11969 -13.50831 -13.42525 -13.06552 -12.86316 -12.42850 -12.32808 -12.06611 -11.97157 -11.83441 -11.65798 -11.29972 -10.18685 -10.07068 -9.66050 -9.62945 -9.16289 -8.78880 -6.64396 0.35060 0.68853 0.78955 0.88741 1.18804 1.38003 1.48731 1.53187 2.14129 2.62663 3.06671 3.51509 3.99148 4.22704 4.26650 4.29303 4.41866 4.70371 4.78206 4.78946 4.90425 5.07276 5.13150 5.23643 5.31186 5.38399 5.66800 5.74331 5.82821 5.92210 6.01420 6.27118 6.39854 6.62963 6.69816 7.41583 8.11744 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.010040 C = 0.006698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.675055 B = 2788.280758 C = 4179.543086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.044 3.956 3 Si 0.982 3.018 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.083 0.917 9 C 0.122 3.878 10 C -0.227 4.227 11 C 0.097 3.903 12 N -0.592 5.592 13 C 0.199 3.801 14 Cl -0.061 7.061 15 C -0.224 4.224 16 C -0.004 4.004 17 C -0.124 4.124 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.125 4.125 21 C -0.117 4.117 22 H 0.298 0.702 23 H 0.127 0.873 24 H 0.155 0.845 25 H 0.108 0.892 26 H 0.145 0.855 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 -0.611 -3.079 7.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.183 1.183 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.114 3.886 10 C -0.249 4.249 11 C -0.051 4.051 12 N -0.309 5.309 13 C 0.035 3.965 14 Cl -0.033 7.033 15 C -0.231 4.231 16 C -0.005 4.005 17 C -0.143 4.143 18 C -0.139 4.139 19 C -0.147 4.147 20 C -0.142 4.142 21 C -0.136 4.136 22 H 0.110 0.890 23 H 0.145 0.855 24 H 0.173 0.827 25 H 0.126 0.874 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.157 0.843 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.510 -1.367 -2.874 7.246 hybrid contribution 0.086 1.209 -0.029 1.212 sum 6.596 -0.159 -2.903 7.209 Atomic orbital electron populations 1.69743 1.09110 1.31800 1.31430 1.26849 0.95477 1.04585 0.90727 0.85232 0.78982 0.75242 0.80396 1.18183 1.18635 1.18297 1.19687 0.97895 0.91014 1.38976 0.89905 1.18061 0.90886 0.91645 0.88048 1.21995 1.00767 0.98706 1.03458 1.21956 0.98624 0.86902 0.97592 1.66607 1.16001 1.30167 1.18158 1.21494 0.93568 0.85195 0.96246 1.98279 1.88238 1.28998 1.87787 1.19495 1.02333 0.92112 1.09117 1.18506 0.92332 0.96660 0.93014 1.21305 0.93095 1.00085 0.99784 1.21285 0.97907 1.00141 0.94548 1.21438 0.98628 0.98430 0.96243 1.21281 0.92893 0.99862 1.00204 1.21243 0.98760 0.99627 0.93924 0.89044 0.85511 0.82748 0.87418 0.83690 0.83152 0.84253 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.42 10.93 21.87 0.24 -37.18 15 2 C 0.04 1.98 5.20 85.34 0.44 2.43 15 3 Si 0.98 34.57 29.59 68.60 2.03 36.60 15 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 15 5 H -0.26 -8.63 7.11 99.48 0.71 -7.93 15 6 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 7 C -0.45 -22.05 8.12 23.40 0.19 -21.86 15 8 H 0.08 4.07 7.20 -2.91 -0.02 4.05 15 9 C 0.12 6.24 5.61 -20.93 -0.12 6.13 15 10 C -0.23 -11.32 8.73 22.57 0.20 -11.12 15 11 C 0.10 4.54 11.09 84.22 0.93 5.47 15 12 N -0.59 -29.02 10.30 -187.05 -1.93 -30.94 15 13 C 0.20 9.53 7.30 85.00 0.62 10.15 15 14 Cl -0.06 -2.50 27.52 -2.72 -0.07 -2.57 15 15 C -0.22 -10.89 5.39 -19.46 -0.10 -10.99 15 16 C 0.00 -0.19 3.82 -20.04 -0.08 -0.26 15 17 C -0.12 -4.63 8.91 22.54 0.20 -4.42 15 18 C -0.12 -3.59 10.03 22.23 0.22 -3.36 15 19 C -0.13 -3.56 10.04 22.35 0.22 -3.33 15 20 C -0.12 -3.92 10.03 22.23 0.22 -3.70 15 21 C -0.12 -4.68 9.00 22.54 0.20 -4.48 15 22 H 0.30 12.51 8.29 -92.71 -0.77 11.74 15 23 H 0.13 6.33 6.23 -2.91 -0.02 6.31 15 24 H 0.16 6.16 8.06 -2.91 -0.02 6.14 15 25 H 0.11 4.01 8.06 -2.91 -0.02 3.99 15 26 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 27 H 0.15 2.95 8.06 -2.91 -0.02 2.92 15 28 H 0.14 3.55 8.06 -2.91 -0.02 3.52 15 29 H 0.10 4.22 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -56.39 272.99 4.60 -51.79 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 1.17 Total: 21.68 kcal Atomic # 6 Polarization: -42.52 SS G_CDS: 3.16 Total: -39.36 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.69 Total: -68.13 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.07 Total: -2.57 kcal Total: -56.39 4.60 -51.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309201161.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.368 kcal (2) G-P(sol) polarization free energy of solvation -56.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds