Wall clock time and date at job start Mon Mar 30 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00621 * 3 2 1 5 5 H 1.48507 * 109.46776 * 30.00308 * 3 2 1 6 6 H 1.48492 * 109.47289 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00268 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99532 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47171 * 60.00209 * 9 7 2 11 11 N 1.46899 * 109.46911 * 299.99421 * 9 7 2 12 12 C 1.50703 * 109.46436 * 179.97438 * 9 7 2 13 13 C 1.38352 * 119.85326 * 259.99381 * 12 9 7 14 14 C 1.37967 * 120.14199 * 179.97438 * 13 12 9 15 15 C 1.39564 * 119.85566 * 0.02947 * 14 13 12 16 16 C 1.47825 * 120.14589 * 179.97438 * 15 14 13 17 17 C 1.34797 * 125.27368 * 179.97438 * 16 15 14 18 18 C 1.37965 * 114.70759 * 179.97438 * 17 16 15 19 19 C 1.33614 * 115.06306 * 0.27418 * 18 17 16 20 20 S 1.75864 * 109.75985 * 359.59653 * 19 18 17 21 21 C 1.39580 * 119.71210 * 0.24987 * 15 14 13 22 22 C 1.37963 * 119.84845 * 359.44798 * 21 15 14 23 23 H 0.97003 * 119.99293 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99340 * 176.05328 * 11 9 7 25 25 H 1.00893 * 111.00370 * 299.99948 * 11 9 7 26 26 H 1.07998 * 119.92980 * 0.02562 * 13 12 9 27 27 H 1.08004 * 120.06759 * 180.02562 * 14 13 12 28 28 H 1.08001 * 122.64055 * 359.95214 * 17 16 15 29 29 H 1.08002 * 122.46493 * 179.97438 * 18 17 16 30 30 H 1.07997 * 125.11794 * 179.72535 * 19 18 17 31 31 H 1.07999 * 120.06979 * 179.75069 * 21 15 14 32 32 H 1.07994 * 119.92561 * 180.29627 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 7 4.0007 -0.5014 -1.2007 12 6 4.0138 -2.6150 -0.0010 13 6 4.4403 -3.1946 1.1806 14 6 4.9007 -4.4951 1.1877 15 6 4.9362 -5.2261 -0.0007 16 6 5.4288 -6.6198 -0.0006 17 6 5.5071 -7.4178 -1.0842 18 6 6.0012 -8.6816 -0.8351 19 6 6.3206 -8.9234 0.4396 20 16 6.0042 -7.4936 1.4133 21 6 4.5099 -4.6334 -1.1904 22 6 4.0459 -3.3342 -1.1825 23 1 -0.4849 0.8401 0.0004 24 1 5.0072 -0.4315 -1.1925 25 1 3.6769 -0.9588 -2.0397 26 1 4.4120 -2.6280 2.0996 27 1 5.2330 -4.9465 2.1109 28 1 5.2064 -7.0935 -2.0695 29 1 6.1166 -9.4226 -1.6123 30 1 6.7157 -9.8558 0.8150 31 1 4.5386 -5.1924 -2.1140 32 1 3.7113 -2.8761 -2.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309257340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:25 Heat of formation + Delta-G solvation = 54.350956 kcal Electronic energy + Delta-G solvation = -15929.543078 eV Core-core repulsion = 13367.195017 eV Total energy + Delta-G solvation = -2562.348060 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21943 -37.57466 -34.95301 -32.06348 -31.10609 -30.50859 -27.97729 -26.23259 -24.30579 -22.56431 -22.16448 -19.99261 -18.92678 -17.79450 -16.87207 -15.91357 -15.20258 -15.02095 -14.59185 -14.31985 -13.88582 -13.45507 -13.23034 -13.08478 -12.58576 -12.39159 -12.22092 -12.13341 -11.77990 -11.43921 -10.96806 -10.70938 -10.51939 -10.35857 -9.85437 -9.44266 -9.12747 -8.59886 -8.56920 -8.54577 -7.79629 -7.53313 -6.04252 -4.15415 0.58771 1.54603 1.80396 1.94603 1.95457 2.84425 3.54896 3.58984 3.71775 4.25629 4.61889 4.72926 4.95304 5.17757 5.23166 5.24849 5.39246 5.49946 5.62730 5.77885 5.87702 5.90857 6.08614 6.14839 6.31717 6.38776 6.42575 6.73625 6.81381 6.84750 7.21047 7.35923 7.56316 8.09389 8.26628 8.63097 8.95588 9.58104 11.04981 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.047708 B = 0.004300 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.757338 B = 6510.345575 C = 6600.385335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.082 3.918 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.318 1.318 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.072 0.928 9 C 0.212 3.788 10 H 0.052 0.948 11 N -0.840 5.840 12 C -0.054 4.054 13 C -0.116 4.116 14 C -0.107 4.107 15 C -0.054 4.054 16 C -0.111 4.111 17 C -0.151 4.151 18 C -0.126 4.126 19 C -0.231 4.231 20 S 0.107 5.893 21 C -0.096 4.096 22 C -0.116 4.116 23 H 0.264 0.736 24 H 0.312 0.688 25 H 0.335 0.665 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.162 0.838 31 H 0.118 0.882 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.514 -14.147 -0.415 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.122 4.122 3 Si 0.770 3.230 4 H -0.206 1.206 5 H -0.248 1.248 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.090 0.910 9 C 0.103 3.897 10 H 0.070 0.930 11 N -0.370 5.370 12 C -0.056 4.056 13 C -0.135 4.135 14 C -0.126 4.126 15 C -0.056 4.056 16 C -0.228 4.228 17 C -0.181 4.181 18 C -0.157 4.157 19 C -0.367 4.367 20 S 0.372 5.628 21 C -0.116 4.116 22 C -0.135 4.135 23 H 0.074 0.926 24 H 0.123 0.877 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.132 0.868 28 H 0.158 0.842 29 H 0.156 0.844 30 H 0.179 0.821 31 H 0.136 0.864 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.124 -13.125 1.392 18.613 hybrid contribution 0.590 -0.620 -1.729 1.930 sum 13.714 -13.745 -0.337 19.419 Atomic orbital electron populations 1.69960 1.06818 1.27431 1.49252 1.25030 0.94608 1.00110 0.92475 0.85845 0.78367 0.80717 0.78079 1.20603 1.24817 1.19980 1.20732 0.87059 0.94640 1.53241 0.91026 1.18785 0.96555 0.83832 0.90525 0.93033 1.59376 1.13052 1.58421 1.06130 1.21401 0.92169 0.99696 0.92364 1.20995 0.99406 0.94606 0.98445 1.21091 1.00450 0.94798 0.96282 1.17878 1.03357 0.89933 0.94482 1.23113 1.05900 0.97650 0.96175 1.20306 1.04569 0.93707 0.99482 1.20045 1.01740 0.97371 0.96527 1.25645 1.11070 1.02531 0.97410 1.84157 1.62222 1.04968 1.11429 1.21051 0.98862 0.95189 0.96493 1.20904 0.99932 0.93858 0.98764 0.92639 0.87706 0.85096 0.85849 0.86816 0.84200 0.84423 0.82082 0.86410 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 3 Si 0.94 23.51 26.03 -169.99 -4.42 19.08 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.32 -8.10 7.11 56.52 0.40 -7.70 16 6 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 7 C -0.52 -14.22 9.28 -34.44 -0.32 -14.54 16 8 H 0.07 2.17 7.98 -52.49 -0.42 1.76 16 9 C 0.21 4.75 2.34 -70.01 -0.16 4.59 16 10 H 0.05 1.20 7.05 -51.93 -0.37 0.83 16 11 N -0.84 -17.00 6.59 -6.65 -0.04 -17.05 16 12 C -0.05 -1.05 4.89 -104.53 -0.51 -1.56 16 13 C -0.12 -2.08 9.65 -39.64 -0.38 -2.46 16 14 C -0.11 -1.73 9.60 -39.19 -0.38 -2.11 16 15 C -0.05 -0.86 5.87 -104.98 -0.62 -1.48 16 16 C -0.11 -1.55 6.37 -36.88 -0.24 -1.78 16 17 C -0.15 -1.86 9.65 -40.90 -0.39 -2.26 16 18 C -0.13 -1.34 10.16 -41.30 -0.42 -1.75 16 19 C -0.23 -2.37 11.22 29.11 0.33 -2.04 16 20 S 0.11 1.27 22.26 -107.50 -2.39 -1.12 16 21 C -0.10 -1.52 9.54 -39.18 -0.37 -1.89 16 22 C -0.12 -2.06 9.27 -39.64 -0.37 -2.42 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.31 5.41 9.06 -39.29 -0.36 5.05 16 25 H 0.33 6.44 7.33 -39.30 -0.29 6.15 16 26 H 0.12 2.08 8.03 -52.49 -0.42 1.66 16 27 H 0.11 1.61 7.29 -52.48 -0.38 1.22 16 28 H 0.14 1.53 6.89 -52.49 -0.36 1.17 16 29 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.56 6.76 -52.49 -0.35 1.20 16 32 H 0.12 2.09 6.65 -52.49 -0.35 1.74 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -30.89 284.38 -9.04 -39.94 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.31 Total: 8.94 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.93 Total: -27.47 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.73 Total: -43.65 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.42 Total: 19.08 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.39 Total: -1.12 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.89 -9.04 -39.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309257340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.288 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds