Wall clock time and date at job start Mon Mar 30 2020 07:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00373 * 2 1 4 4 H 1.48501 * 109.46896 * 270.00621 * 3 2 1 5 5 H 1.48507 * 109.46776 * 30.00308 * 3 2 1 6 6 H 1.48492 * 109.47289 * 150.00451 * 3 2 1 7 7 C 1.37882 * 119.99677 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00268 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99532 * 179.97438 * 7 2 1 10 10 H 1.08994 * 109.47171 * 60.00209 * 9 7 2 11 11 N 1.46899 * 109.46911 * 299.99421 * 9 7 2 12 12 C 1.50703 * 109.46436 * 179.97438 * 9 7 2 13 13 C 1.38352 * 119.85326 * 259.99381 * 12 9 7 14 14 C 1.37967 * 120.14199 * 179.97438 * 13 12 9 15 15 C 1.39564 * 119.85566 * 0.02947 * 14 13 12 16 16 C 1.47825 * 120.14589 * 179.97438 * 15 14 13 17 17 C 1.34797 * 125.27368 * 179.97438 * 16 15 14 18 18 C 1.37965 * 114.70759 * 179.97438 * 17 16 15 19 19 C 1.33614 * 115.06306 * 0.27418 * 18 17 16 20 20 S 1.75864 * 109.75985 * 359.59653 * 19 18 17 21 21 C 1.39580 * 119.71210 * 0.24987 * 15 14 13 22 22 C 1.37963 * 119.84845 * 359.44798 * 21 15 14 23 23 H 0.97003 * 119.99293 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99340 * 176.05328 * 11 9 7 25 25 H 1.00893 * 111.00370 * 299.99948 * 11 9 7 26 26 H 1.07998 * 119.92980 * 0.02562 * 13 12 9 27 27 H 1.08004 * 120.06759 * 180.02562 * 14 13 12 28 28 H 1.08001 * 122.64055 * 359.95214 * 17 16 15 29 29 H 1.08002 * 122.46493 * 179.97438 * 18 17 16 30 30 H 1.07997 * 125.11794 * 179.72535 * 19 18 17 31 31 H 1.07999 * 120.06979 * 179.75069 * 21 15 14 32 32 H 1.07994 * 119.92561 * 180.29627 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 1 3.8752 -0.6805 0.8888 11 7 4.0007 -0.5014 -1.2007 12 6 4.0138 -2.6150 -0.0010 13 6 4.4403 -3.1946 1.1806 14 6 4.9007 -4.4951 1.1877 15 6 4.9362 -5.2261 -0.0007 16 6 5.4288 -6.6198 -0.0006 17 6 5.5071 -7.4178 -1.0842 18 6 6.0012 -8.6816 -0.8351 19 6 6.3206 -8.9234 0.4396 20 16 6.0042 -7.4936 1.4133 21 6 4.5099 -4.6334 -1.1904 22 6 4.0459 -3.3342 -1.1825 23 1 -0.4849 0.8401 0.0004 24 1 5.0072 -0.4315 -1.1925 25 1 3.6769 -0.9588 -2.0397 26 1 4.4120 -2.6280 2.0996 27 1 5.2330 -4.9465 2.1109 28 1 5.2064 -7.0935 -2.0695 29 1 6.1166 -9.4226 -1.6123 30 1 6.7157 -9.8558 0.8150 31 1 4.5386 -5.1924 -2.1140 32 1 3.7113 -2.8761 -2.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309257340.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:25 Heat of formation + Delta-G solvation = 35.209790 kcal Electronic energy + Delta-G solvation = -15930.373101 eV Core-core repulsion = 13367.195017 eV Total energy + Delta-G solvation = -2563.178084 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51212 -38.57198 -36.55694 -34.07545 -32.41292 -31.82813 -29.22894 -28.03611 -25.46109 -23.98457 -23.41963 -21.54018 -19.88242 -19.02438 -18.75107 -17.13573 -16.67672 -16.51958 -15.92904 -15.76616 -15.49601 -14.66415 -14.48255 -14.34763 -14.23741 -13.68167 -13.48086 -13.37561 -13.04548 -12.93386 -12.67454 -12.13914 -12.09911 -11.68773 -11.57214 -11.42444 -10.75751 -10.41080 -9.88994 -9.45524 -9.41213 -8.76652 -8.24854 -6.38597 -0.44387 0.48609 0.64092 0.80955 1.07559 1.51896 1.58470 1.72173 1.89385 2.52739 2.92946 3.10466 3.65036 3.93167 4.03119 4.15024 4.18571 4.26405 4.44020 4.54433 4.64396 4.72981 4.91061 4.96120 5.12205 5.19178 5.32726 5.43562 5.50797 5.53804 5.63169 5.81110 6.03160 6.14152 6.46055 6.75813 6.98296 7.38307 8.88319 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.047708 B = 0.004300 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.757338 B = 6510.345575 C = 6600.385335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.275 1.275 5 H -0.325 1.325 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.027 0.973 9 C 0.222 3.778 10 H 0.044 0.956 11 N -0.842 5.842 12 C -0.087 4.087 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.045 4.045 16 C -0.155 4.155 17 C -0.138 4.138 18 C -0.139 4.139 19 C -0.213 4.213 20 S 0.100 5.900 21 C -0.100 4.100 22 C -0.121 4.121 23 H 0.265 0.735 24 H 0.334 0.666 25 H 0.341 0.659 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.152 0.848 29 H 0.168 0.832 30 H 0.192 0.808 31 H 0.145 0.855 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.954 -16.003 -1.005 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.172 4.172 3 Si 0.832 3.168 4 H -0.201 1.201 5 H -0.255 1.255 6 H -0.184 1.184 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.112 3.888 10 H 0.062 0.938 11 N -0.374 5.374 12 C -0.089 4.089 13 C -0.144 4.144 14 C -0.133 4.133 15 C -0.047 4.047 16 C -0.272 4.272 17 C -0.169 4.169 18 C -0.168 4.168 19 C -0.348 4.348 20 S 0.365 5.635 21 C -0.120 4.120 22 C -0.139 4.139 23 H 0.074 0.926 24 H 0.147 0.853 25 H 0.156 0.844 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.169 0.831 29 H 0.185 0.815 30 H 0.209 0.791 31 H 0.162 0.838 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 15.593 -14.989 0.803 21.643 hybrid contribution -0.099 -0.345 -1.557 1.598 sum 15.494 -15.334 -0.754 21.812 Atomic orbital electron populations 1.70093 1.08602 1.28220 1.51867 1.25873 0.95169 1.03645 0.92495 0.84815 0.77407 0.76393 0.78186 1.20118 1.25489 1.18441 1.20963 0.90008 0.92619 1.51677 0.95445 1.18397 0.93237 0.86167 0.90973 0.93783 1.59067 1.14735 1.58055 1.05517 1.21146 0.95141 0.98721 0.93899 1.21100 0.99687 0.95555 0.98066 1.21268 1.00387 0.94160 0.97469 1.18147 1.01426 0.90966 0.94111 1.23079 1.09014 0.97312 0.97833 1.20660 1.02570 0.94089 0.99536 1.20352 1.01687 0.97281 0.97502 1.26109 1.09094 1.02634 0.96973 1.84180 1.62112 1.05870 1.11291 1.21300 0.98343 0.94556 0.97805 1.20986 1.00015 0.94722 0.98205 0.92644 0.85328 0.84438 0.85630 0.85079 0.83083 0.81511 0.79062 0.83763 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 2 C 0.03 1.59 5.47 84.66 0.46 2.05 16 3 Si 1.00 48.96 26.03 68.60 1.79 50.74 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.32 -16.05 7.11 99.48 0.71 -15.34 16 6 H -0.26 -11.94 6.54 99.48 0.65 -11.29 16 7 C -0.51 -29.13 9.28 25.60 0.24 -28.89 16 8 H 0.03 1.75 7.98 -2.91 -0.02 1.73 16 9 C 0.22 10.02 2.34 43.43 0.10 10.12 16 10 H 0.04 2.04 7.05 -2.39 -0.02 2.03 16 11 N -0.84 -33.28 6.59 -174.95 -1.15 -34.43 16 12 C -0.09 -3.42 4.89 -19.81 -0.10 -3.52 16 13 C -0.13 -4.54 9.65 22.23 0.21 -4.32 16 14 C -0.11 -3.62 9.60 22.53 0.22 -3.41 16 15 C -0.04 -1.36 5.87 -20.10 -0.12 -1.47 16 16 C -0.16 -4.00 6.37 24.02 0.15 -3.84 16 17 C -0.14 -2.97 9.65 21.41 0.21 -2.76 16 18 C -0.14 -2.37 10.16 21.16 0.21 -2.15 16 19 C -0.21 -3.52 11.22 66.77 0.75 -2.77 16 20 S 0.10 2.14 22.26 -56.49 -1.26 0.88 16 21 C -0.10 -3.05 9.54 22.53 0.21 -2.83 16 22 C -0.12 -4.25 9.27 22.23 0.21 -4.04 16 23 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.33 11.00 9.06 -89.69 -0.81 10.19 16 25 H 0.34 12.88 7.33 -89.70 -0.66 12.23 16 26 H 0.13 4.31 8.03 -2.91 -0.02 4.29 16 27 H 0.13 3.59 7.29 -2.91 -0.02 3.57 16 28 H 0.15 2.80 6.89 -2.91 -0.02 2.78 16 29 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 30 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.14 3.49 6.76 -2.91 -0.02 3.47 16 32 H 0.13 4.23 6.65 -2.91 -0.02 4.21 16 Total: -1.00 -68.11 284.38 2.07 -66.04 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.37 Total: 24.16 kcal Atomic # 6 Polarization: -50.61 SS G_CDS: 2.76 Total: -47.85 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -0.85 Total: -93.98 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.79 Total: 50.74 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -1.26 Total: 0.88 kcal Total: -68.11 2.07 -66.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309257340.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.249 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds