Wall clock time and date at job start Mon Mar 30 2020 07:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46797 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47032 * 149.99940 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.33055 * 125.03482 * 260.00004 * 12 9 7 14 14 C 1.39366 * 114.91360 * 179.97438 * 13 12 9 15 15 C 1.48374 * 122.76946 * 180.02562 * 14 13 12 16 16 C 1.39356 * 120.12083 * 359.72844 * 15 14 13 17 17 C 1.38013 * 119.87237 * 179.74873 * 16 15 14 18 18 C 1.38319 * 120.12376 * 0.54698 * 17 16 15 19 19 C 1.38320 * 120.25006 * 359.70021 * 18 17 16 20 20 C 1.38018 * 120.12408 * 0.02573 * 19 18 17 21 21 C 1.34572 * 114.46399 * 0.02562 * 14 13 12 22 22 S 1.75815 * 125.03177 * 79.69447 * 12 9 7 23 23 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 24 24 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 25 25 H 1.00901 * 111.00152 * 63.94840 * 11 9 7 26 26 H 1.08002 * 122.54109 * 359.97438 * 13 12 9 27 27 H 1.08002 * 120.06185 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.93319 * 180.27204 * 17 16 15 29 29 H 1.08002 * 119.87537 * 179.72461 * 18 17 16 30 30 H 1.07998 * 119.94329 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.06543 * 180.02562 * 20 19 18 32 32 H 1.07998 * 125.23024 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.5828 -4.3482 -1.0734 14 6 3.5070 -5.3630 -0.8324 15 6 4.0202 -6.2529 -1.9030 16 6 3.5755 -6.0974 -3.2145 17 6 4.0602 -6.9245 -4.2073 18 6 4.9770 -7.9137 -3.9006 19 6 5.4181 -8.0759 -2.5997 20 6 4.9444 -7.2508 -1.5998 21 6 3.8957 -5.4694 0.4516 22 16 3.0818 -4.2444 1.4159 23 1 -0.4849 0.8401 0.0004 24 1 0.9652 -2.5261 2.0381 25 1 -0.3004 -1.8577 1.1911 26 1 2.1830 -4.1479 -2.0566 27 1 2.8557 -5.3287 -3.4542 28 1 3.7195 -6.8020 -5.2249 29 1 5.3503 -8.5616 -4.6799 30 1 6.1337 -8.8502 -2.3657 31 1 5.2897 -7.3780 -0.5844 32 1 4.6021 -6.1929 0.8308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309258989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:27 Heat of formation + Delta-G solvation = 45.683962 kcal Electronic energy + Delta-G solvation = -15904.830758 eV Core-core repulsion = 13342.106869 eV Total energy + Delta-G solvation = -2562.723889 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.32142 -37.05178 -34.72693 -31.74682 -30.92027 -30.53915 -28.13701 -25.92464 -24.14998 -22.62084 -21.88155 -20.28614 -18.50563 -17.11961 -16.59834 -16.05961 -15.17716 -14.93772 -14.42619 -14.24549 -13.56065 -13.35746 -13.26165 -12.87447 -12.57433 -12.03269 -11.98640 -11.74353 -11.28192 -11.11159 -10.94318 -10.88501 -10.75436 -10.19312 -10.11868 -9.78070 -9.09841 -8.85953 -8.72610 -7.94109 -7.40329 -7.28683 -6.17818 -4.34910 1.04908 1.49951 2.02747 2.32479 2.75036 3.18967 3.26121 3.29162 3.36978 4.15149 4.27783 4.93663 4.99252 5.03414 5.06252 5.24192 5.50515 5.54505 5.61581 5.87945 6.07188 6.19339 6.23531 6.45825 6.52970 6.54385 6.59380 6.82274 7.04916 7.07161 7.11815 7.48799 7.66671 7.95932 8.54040 8.80931 8.98776 9.37025 10.80185 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.005074 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.129695 B = 5516.986875 C = 5937.207317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.266 3.734 10 H 0.059 0.941 11 N -0.849 5.849 12 C -0.083 4.083 13 C -0.175 4.175 14 C -0.056 4.056 15 C -0.008 4.008 16 C -0.110 4.110 17 C -0.118 4.118 18 C -0.132 4.132 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.246 4.246 22 S 0.108 5.892 23 H 0.267 0.733 24 H 0.311 0.689 25 H 0.360 0.640 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 -12.114 -3.169 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.154 3.846 10 H 0.076 0.924 11 N -0.379 5.379 12 C -0.201 4.201 13 C -0.202 4.202 14 C -0.070 4.070 15 C -0.010 4.010 16 C -0.129 4.129 17 C -0.136 4.136 18 C -0.151 4.151 19 C -0.139 4.139 20 C -0.136 4.136 21 C -0.381 4.381 22 S 0.374 5.626 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.176 0.824 26 H 0.152 0.848 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 7.301 -12.282 -1.862 14.409 hybrid contribution 0.896 1.542 -1.381 2.256 sum 8.197 -10.741 -3.244 13.895 Atomic orbital electron populations 1.69740 1.05872 1.27452 1.50064 1.25011 0.94975 0.99404 0.94099 0.86464 0.79844 0.82630 0.78371 1.20406 1.21033 1.19747 1.21808 0.93783 0.90698 1.52388 0.92339 1.17670 0.88070 0.86573 0.92300 0.92379 1.59545 1.18426 1.56279 1.03634 1.25155 1.00813 1.00140 0.94013 1.19819 1.02420 0.98103 0.99902 1.17692 0.99508 0.97603 0.92207 1.18612 0.95584 0.94355 0.92475 1.21326 0.99944 0.99498 0.92125 1.21076 0.97636 0.95806 0.99112 1.21112 0.98588 0.98855 0.96510 1.21016 1.00240 0.99467 0.93129 1.21182 0.97533 0.95492 0.99349 1.25522 1.09055 1.06429 0.97130 1.84008 1.38555 1.27026 1.13012 0.92284 0.87970 0.82360 0.84838 0.85516 0.86133 0.86471 0.86307 0.86125 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 11.54 55.43 0.64 -23.45 16 2 C 0.07 1.80 5.38 -17.82 -0.10 1.70 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.55 -14.50 8.71 -34.44 -0.30 -14.80 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.27 6.56 3.14 -70.02 -0.22 6.34 16 10 H 0.06 1.56 8.12 -51.93 -0.42 1.14 16 11 N -0.85 -20.12 9.11 -6.65 -0.06 -20.18 16 12 C -0.08 -1.80 5.37 -36.11 -0.19 -2.00 16 13 C -0.17 -3.49 9.38 -40.96 -0.38 -3.87 16 14 C -0.06 -1.00 5.79 -106.60 -0.62 -1.62 16 15 C -0.01 -0.12 5.88 -104.89 -0.62 -0.74 16 16 C -0.11 -1.59 9.50 -39.25 -0.37 -1.96 16 17 C -0.12 -1.44 10.03 -39.63 -0.40 -1.83 16 18 C -0.13 -1.48 10.04 -39.52 -0.40 -1.88 16 19 C -0.12 -1.39 10.03 -39.63 -0.40 -1.78 16 20 C -0.12 -1.56 9.48 -39.25 -0.37 -1.93 16 21 C -0.25 -4.12 10.51 29.44 0.31 -3.82 16 22 S 0.11 2.02 22.51 -107.50 -2.42 -0.40 16 23 H 0.27 6.89 8.31 -40.82 -0.34 6.56 16 24 H 0.31 7.09 8.31 -39.29 -0.33 6.76 16 25 H 0.36 9.04 7.08 -39.29 -0.28 8.76 16 26 H 0.13 2.54 6.71 -52.49 -0.35 2.19 16 27 H 0.13 1.78 6.55 -52.49 -0.34 1.44 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 1.42 6.61 -52.49 -0.35 1.07 16 32 H 0.15 2.11 6.81 -52.49 -0.36 1.75 16 LS Contribution 287.66 15.07 4.33 4.33 Total: -1.00 -27.53 287.66 -9.82 -37.34 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -3.24 Total: 14.85 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: -4.05 Total: -28.18 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.58 Total: -43.64 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.42 Total: -0.40 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.53 -9.82 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309258989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.028 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds