Wall clock time and date at job start Mon Mar 30 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48501 * 109.47147 * 270.00399 * 3 2 1 5 5 H 1.48499 * 109.46797 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47032 * 149.99940 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 N 1.46899 * 109.47244 * 300.00290 * 9 7 2 12 12 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 13 13 C 1.33055 * 125.03482 * 260.00004 * 12 9 7 14 14 C 1.39366 * 114.91360 * 179.97438 * 13 12 9 15 15 C 1.48374 * 122.76946 * 180.02562 * 14 13 12 16 16 C 1.39356 * 120.12083 * 359.72844 * 15 14 13 17 17 C 1.38013 * 119.87237 * 179.74873 * 16 15 14 18 18 C 1.38319 * 120.12376 * 0.54698 * 17 16 15 19 19 C 1.38320 * 120.25006 * 359.70021 * 18 17 16 20 20 C 1.38018 * 120.12408 * 0.02573 * 19 18 17 21 21 C 1.34572 * 114.46399 * 0.02562 * 14 13 12 22 22 S 1.75815 * 125.03177 * 79.69447 * 12 9 7 23 23 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 24 24 H 1.00903 * 110.99833 * 299.99603 * 11 9 7 25 25 H 1.00901 * 111.00152 * 63.94840 * 11 9 7 26 26 H 1.08002 * 122.54109 * 359.97438 * 13 12 9 27 27 H 1.08002 * 120.06185 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.93319 * 180.27204 * 17 16 15 29 29 H 1.08002 * 119.87537 * 179.72461 * 18 17 16 30 30 H 1.07998 * 119.94329 * 179.97438 * 19 18 17 31 31 H 1.07996 * 120.06543 * 180.02562 * 20 19 18 32 32 H 1.07998 * 125.23024 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2303 -3.6447 -0.0005 13 6 2.5828 -4.3482 -1.0734 14 6 3.5070 -5.3630 -0.8324 15 6 4.0202 -6.2529 -1.9030 16 6 3.5755 -6.0974 -3.2145 17 6 4.0602 -6.9245 -4.2073 18 6 4.9770 -7.9137 -3.9006 19 6 5.4181 -8.0759 -2.5997 20 6 4.9444 -7.2508 -1.5998 21 6 3.8957 -5.4694 0.4516 22 16 3.0818 -4.2444 1.4159 23 1 -0.4849 0.8401 0.0004 24 1 0.9652 -2.5261 2.0381 25 1 -0.3004 -1.8577 1.1911 26 1 2.1830 -4.1479 -2.0566 27 1 2.8557 -5.3287 -3.4542 28 1 3.7195 -6.8020 -5.2249 29 1 5.3503 -8.5616 -4.6799 30 1 6.1337 -8.8502 -2.3657 31 1 5.2897 -7.3780 -0.5844 32 1 4.6021 -6.1929 0.8308 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309258989.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:26 Heat of formation + Delta-G solvation = 30.541435 kcal Electronic energy + Delta-G solvation = -15905.487388 eV Core-core repulsion = 13342.106869 eV Total energy + Delta-G solvation = -2563.380519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42236 -38.44667 -36.53667 -33.57509 -32.01676 -31.75632 -29.59233 -27.86113 -25.54891 -23.97222 -23.03859 -21.75623 -19.90780 -18.72155 -18.23820 -17.41378 -16.77578 -16.23601 -16.03901 -15.37270 -14.99533 -14.85703 -14.44406 -14.28564 -14.12424 -13.52598 -13.44058 -13.11049 -12.99451 -12.79472 -12.73157 -12.18931 -12.01914 -11.93292 -11.78224 -11.40974 -10.77459 -10.26361 -9.81320 -9.53889 -9.22131 -8.70460 -8.18242 -6.44707 -0.11983 0.54457 0.66099 0.85482 1.25107 1.35592 1.37620 1.47699 2.01031 2.34480 2.99966 3.08678 3.82047 3.98491 4.14527 4.18529 4.34099 4.38234 4.59183 4.64041 4.65422 4.78372 5.02678 5.14509 5.16750 5.27444 5.49435 5.57751 5.58662 5.64541 5.69085 5.86139 5.97444 6.14714 6.53710 6.79545 6.99817 7.30875 8.76779 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.027768 B = 0.005074 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.129695 B = 5516.986875 C = 5937.207317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.562 4.562 8 H 0.047 0.953 9 C 0.271 3.729 10 H 0.022 0.978 11 N -0.841 5.841 12 C -0.129 4.129 13 C -0.172 4.172 14 C -0.065 4.065 15 C -0.038 4.038 16 C -0.131 4.131 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.229 4.229 22 S 0.117 5.883 23 H 0.270 0.730 24 H 0.317 0.683 25 H 0.350 0.650 26 H 0.128 0.872 27 H 0.115 0.885 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.893 -13.809 -3.504 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.602 4.602 8 H 0.066 0.934 9 C 0.159 3.841 10 H 0.039 0.961 11 N -0.370 5.370 12 C -0.247 4.247 13 C -0.201 4.201 14 C -0.078 4.078 15 C -0.040 4.040 16 C -0.150 4.150 17 C -0.141 4.141 18 C -0.143 4.143 19 C -0.137 4.137 20 C -0.140 4.140 21 C -0.364 4.364 22 S 0.383 5.617 23 H 0.079 0.921 24 H 0.126 0.874 25 H 0.165 0.835 26 H 0.146 0.854 27 H 0.133 0.867 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.154 0.846 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 9.511 -13.992 -2.197 17.060 hybrid contribution 0.249 1.934 -1.372 2.384 sum 9.761 -12.058 -3.569 15.919 Atomic orbital electron populations 1.69832 1.06909 1.28264 1.50266 1.25728 0.95778 1.02327 0.93671 0.85516 0.78643 0.78946 0.78314 1.20187 1.20226 1.19620 1.21972 0.93329 0.92035 1.52815 0.93448 1.17369 0.88067 0.87580 0.91057 0.96064 1.59500 1.18164 1.55606 1.03712 1.24866 1.02458 1.00953 0.96395 1.20022 1.02395 0.98332 0.99330 1.17839 0.99037 0.97408 0.93544 1.18650 0.97612 0.95609 0.92155 1.21415 1.00556 1.00277 0.92752 1.21365 0.97662 0.95518 0.99564 1.21563 0.97173 0.98182 0.97431 1.21429 1.00113 0.99420 0.92727 1.21421 0.96820 0.94932 1.00812 1.25908 1.08462 1.05781 0.96284 1.83792 1.38461 1.27669 1.11802 0.92056 0.87352 0.83452 0.85416 0.86738 0.84079 0.83217 0.83062 0.84573 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.41 11.54 21.45 0.25 -50.16 16 2 C 0.03 1.39 5.38 84.65 0.46 1.84 16 3 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.56 -30.74 8.71 25.60 0.22 -30.51 16 8 H 0.05 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.27 14.02 3.14 43.42 0.14 14.16 16 10 H 0.02 1.23 8.12 -2.39 -0.02 1.22 16 11 N -0.84 -41.32 9.11 -174.95 -1.59 -42.91 16 12 C -0.13 -5.79 5.37 24.53 0.13 -5.66 16 13 C -0.17 -7.11 9.38 21.38 0.20 -6.91 16 14 C -0.07 -2.30 5.79 -21.15 -0.12 -2.42 16 15 C -0.04 -1.14 5.88 -20.04 -0.12 -1.26 16 16 C -0.13 -3.74 9.50 22.49 0.21 -3.52 16 17 C -0.12 -2.73 10.03 22.24 0.22 -2.51 16 18 C -0.13 -2.33 10.04 22.31 0.22 -2.10 16 19 C -0.12 -2.26 10.03 22.24 0.22 -2.04 16 20 C -0.12 -2.88 9.48 22.49 0.21 -2.67 16 21 C -0.23 -7.32 10.51 66.98 0.70 -6.62 16 22 S 0.12 4.35 22.51 -56.49 -1.27 3.08 16 23 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 24 H 0.32 14.81 8.31 -89.69 -0.75 14.07 16 25 H 0.35 18.25 7.08 -89.69 -0.63 17.61 16 26 H 0.13 5.22 6.71 -2.91 -0.02 5.21 16 27 H 0.11 3.39 6.55 -2.91 -0.02 3.37 16 28 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.14 2.69 6.61 -2.91 -0.02 2.67 16 32 H 0.19 4.55 6.81 -2.91 -0.02 4.53 16 Total: -1.00 -60.51 287.66 1.90 -58.61 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.22 Total: 36.71 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 2.71 Total: -50.22 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -1.35 Total: -93.07 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 4.35 SS G_CDS: -1.27 Total: 3.08 kcal Total: -60.51 1.90 -58.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309258989.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.151 kcal (2) G-P(sol) polarization free energy of solvation -60.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds