Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.37983 * 120.07589 * 264.99961 * 12 9 7 14 14 C 1.38335 * 120.14349 * 179.97438 * 13 12 9 15 15 C 1.38383 * 120.29388 * 0.02562 * 14 13 12 16 16 C 1.37938 * 120.14283 * 0.02562 * 15 14 13 17 17 C 1.39553 * 120.07149 * 84.72131 * 12 9 7 18 18 C 1.47830 * 120.14516 * 0.02562 * 17 12 9 19 19 C 1.34793 * 125.27121 * 129.99478 * 18 17 12 20 20 C 1.37966 * 114.70289 * 179.97438 * 19 18 17 21 21 C 1.33611 * 115.06489 * 359.97438 * 20 19 18 22 22 S 1.75853 * 109.76099 * 359.76126 * 21 20 19 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.07996 * 119.92301 * 0.02562 * 13 12 9 27 27 H 1.07997 * 119.85113 * 180.02562 * 14 13 12 28 28 H 1.07995 * 119.92549 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.07183 * 180.02562 * 16 15 14 30 30 H 1.07993 * 122.65176 * 359.97438 * 19 18 17 31 31 H 1.08005 * 122.46753 * 180.02562 * 20 19 18 32 32 H 1.08003 * 125.11736 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.6007 -4.2378 -1.1890 14 6 3.5000 -5.2889 -1.1906 15 6 4.0336 -5.7529 -0.0012 16 6 3.6710 -5.1694 1.1950 17 6 2.7693 -4.1038 1.2031 18 6 2.3814 -3.4694 2.4808 19 6 1.9629 -4.1266 3.5807 20 6 1.6568 -3.3166 4.6548 21 6 1.8218 -2.0080 4.4420 22 16 2.4027 -1.7405 2.8039 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.1881 -3.8800 -2.1207 27 1 3.7868 -5.7495 -2.1244 28 1 4.7349 -6.5742 -0.0093 29 1 4.0885 -5.5322 2.1226 30 1 1.8742 -5.2022 3.6182 31 1 1.3101 -3.7114 5.5984 32 1 1.6308 -1.2315 5.1680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309259096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = 54.685752 kcal Electronic energy + Delta-G solvation = -16903.651003 eV Core-core repulsion = 14341.317460 eV Total energy + Delta-G solvation = -2562.333542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.09706 -36.78582 -34.97629 -31.67074 -31.65868 -29.31182 -27.53600 -25.77238 -23.69842 -22.88639 -21.34815 -20.13257 -18.43375 -17.25814 -16.85796 -15.60660 -15.08496 -14.64171 -14.23804 -14.19140 -13.71791 -13.28506 -12.79777 -12.60583 -12.27198 -11.98481 -11.86851 -11.84747 -11.43773 -11.07966 -10.82964 -10.52917 -10.21874 -10.08854 -9.74450 -9.03611 -8.69133 -8.42588 -8.08324 -7.60143 -7.55985 -7.47861 -6.28881 -4.08575 1.30152 1.91881 2.04335 2.59992 2.94612 3.36649 3.41612 3.44992 3.59418 4.31252 4.52805 5.19768 5.33819 5.35473 5.40442 5.55536 5.65470 5.86315 5.93755 6.06869 6.08170 6.13448 6.38416 6.51383 6.67384 6.78919 6.90631 6.94282 7.00704 7.12877 7.30181 7.46651 7.87104 8.20569 8.55063 8.67806 8.92829 9.68705 11.09752 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.011137 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.531154 B = 2513.544338 C = 3653.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.050 3.950 3 Si 1.051 2.949 4 H -0.285 1.285 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.584 4.584 8 H 0.050 0.950 9 C 0.231 3.769 10 H 0.046 0.954 11 N -0.830 5.830 12 C -0.058 4.058 13 C -0.129 4.129 14 C -0.119 4.119 15 C -0.144 4.144 16 C -0.104 4.104 17 C -0.023 4.023 18 C -0.151 4.151 19 C -0.150 4.150 20 C -0.151 4.151 21 C -0.282 4.282 22 S 0.252 5.748 23 H 0.293 0.707 24 H 0.326 0.674 25 H 0.304 0.696 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -7.802 3.162 9.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.163 4.163 3 Si 0.879 3.121 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.208 1.208 7 C -0.628 4.628 8 H 0.068 0.932 9 C 0.121 3.879 10 H 0.064 0.936 11 N -0.358 5.358 12 C -0.062 4.062 13 C -0.148 4.148 14 C -0.138 4.138 15 C -0.162 4.162 16 C -0.124 4.124 17 C -0.025 4.025 18 C -0.270 4.270 19 C -0.182 4.182 20 C -0.181 4.181 21 C -0.419 4.419 22 S 0.527 5.473 23 H 0.106 0.894 24 H 0.140 0.860 25 H 0.114 0.886 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.167 -4.120 2.710 7.143 hybrid contribution 0.362 -3.912 0.602 3.975 sum 5.529 -8.032 3.312 10.299 Atomic orbital electron populations 1.70502 1.06863 1.33156 1.40228 1.25508 0.96477 1.01416 0.92912 0.83827 0.75147 0.76004 0.77112 1.21132 1.21342 1.20832 1.21629 0.93422 0.90223 1.57490 0.93223 1.18555 0.88377 0.90449 0.90495 0.93599 1.59432 1.28526 1.42506 1.05369 1.21664 0.97015 0.96155 0.91341 1.20883 0.99156 0.96879 0.97847 1.21082 0.97802 0.97334 0.97557 1.20832 1.01699 1.01130 0.92560 1.21123 0.97503 0.95989 0.97765 1.17992 0.98101 0.95806 0.90593 1.22984 1.09211 0.98001 0.96777 1.20051 1.05468 1.00066 0.92612 1.19733 1.06127 0.92800 0.99484 1.26578 1.11220 0.99920 1.04163 1.86079 1.59728 1.01603 0.99844 0.89382 0.85976 0.88576 0.86433 0.86900 0.86757 0.86597 0.85764 0.86178 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.85 13.51 55.43 0.75 -24.10 16 2 C 0.05 1.31 5.39 -17.82 -0.10 1.22 16 3 Si 1.05 24.08 29.90 -169.99 -5.08 19.00 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.58 -14.90 5.78 -34.44 -0.20 -15.10 16 8 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 9 C 0.23 5.40 1.74 -70.02 -0.12 5.28 16 10 H 0.05 1.20 6.69 -51.93 -0.35 0.86 16 11 N -0.83 -18.26 7.39 -6.65 -0.05 -18.31 16 12 C -0.06 -1.22 5.02 -104.22 -0.52 -1.74 16 13 C -0.13 -2.39 9.26 -39.64 -0.37 -2.76 16 14 C -0.12 -1.90 10.04 -39.49 -0.40 -2.30 16 15 C -0.14 -2.23 10.03 -39.64 -0.40 -2.62 16 16 C -0.10 -1.77 9.67 -39.19 -0.38 -2.15 16 17 C -0.02 -0.45 5.75 -104.98 -0.60 -1.06 16 18 C -0.15 -3.04 4.99 -36.88 -0.18 -3.22 16 19 C -0.15 -2.71 9.96 -40.90 -0.41 -3.12 16 20 C -0.15 -2.58 10.16 -41.30 -0.42 -3.00 16 21 C -0.28 -5.11 11.22 29.11 0.33 -4.78 16 22 S 0.25 5.24 19.20 -107.50 -2.06 3.18 16 23 H 0.29 8.42 6.39 -40.82 -0.26 8.16 16 24 H 0.33 6.86 7.20 -39.30 -0.28 6.58 16 25 H 0.30 6.00 9.06 -39.29 -0.36 5.64 16 26 H 0.12 2.05 6.28 -52.49 -0.33 1.72 16 27 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 32 H 0.15 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 282.07 15.07 4.25 4.25 Total: -1.00 -28.01 282.07 -9.28 -37.29 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -3.32 Total: 14.03 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: -3.77 Total: -35.35 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.70 Total: -42.41 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -2.06 Total: 3.18 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.01 -9.28 -37.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309259096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.978 kcal (2) G-P(sol) polarization free energy of solvation -28.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds