Wall clock time and date at job start Mon Mar 30 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 N 1.46898 * 109.47058 * 60.00265 * 9 7 2 12 12 C 1.50703 * 109.47148 * 179.97438 * 9 7 2 13 13 C 1.37983 * 120.07589 * 264.99961 * 12 9 7 14 14 C 1.38335 * 120.14349 * 179.97438 * 13 12 9 15 15 C 1.38383 * 120.29388 * 0.02562 * 14 13 12 16 16 C 1.37938 * 120.14283 * 0.02562 * 15 14 13 17 17 C 1.39553 * 120.07149 * 84.72131 * 12 9 7 18 18 C 1.47830 * 120.14516 * 0.02562 * 17 12 9 19 19 C 1.34793 * 125.27121 * 129.99478 * 18 17 12 20 20 C 1.37966 * 114.70289 * 179.97438 * 19 18 17 21 21 C 1.33611 * 115.06489 * 359.97438 * 20 19 18 22 22 S 1.75853 * 109.76099 * 359.76126 * 21 20 19 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.00892 * 111.00332 * 60.00049 * 11 9 7 25 25 H 1.00905 * 110.99665 * 183.95824 * 11 9 7 26 26 H 1.07996 * 119.92301 * 0.02562 * 13 12 9 27 27 H 1.07997 * 119.85113 * 180.02562 * 14 13 12 28 28 H 1.07995 * 119.92549 * 179.97438 * 15 14 13 29 29 H 1.08001 * 120.07183 * 180.02562 * 16 15 14 30 30 H 1.07993 * 122.65176 * 359.97438 * 19 18 17 31 31 H 1.08005 * 122.46753 * 180.02562 * 20 19 18 32 32 H 1.08003 * 125.11736 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 7 0.4071 -2.5772 -1.1992 12 6 2.2304 -3.6445 0.0005 13 6 2.6007 -4.2378 -1.1890 14 6 3.5000 -5.2889 -1.1906 15 6 4.0336 -5.7529 -0.0012 16 6 3.6710 -5.1694 1.1950 17 6 2.7693 -4.1038 1.2031 18 6 2.3814 -3.4694 2.4808 19 6 1.9629 -4.1266 3.5807 20 6 1.6568 -3.3166 4.6548 21 6 1.8218 -2.0080 4.4420 22 16 2.4027 -1.7405 2.8039 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.1881 -3.8800 -2.1207 27 1 3.7868 -5.7495 -2.1244 28 1 4.7349 -6.5742 -0.0093 29 1 4.0885 -5.5322 2.1226 30 1 1.8742 -5.2022 3.6182 31 1 1.3101 -3.7114 5.5984 32 1 1.6308 -1.2315 5.1680 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309259096.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:18 Heat of formation + Delta-G solvation = 38.782548 kcal Electronic energy + Delta-G solvation = -16904.340617 eV Core-core repulsion = 14341.317460 eV Total energy + Delta-G solvation = -2563.023157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.51760 -38.22041 -36.68808 -33.53058 -33.05151 -30.81786 -28.97408 -27.61701 -25.11274 -24.60836 -22.75663 -21.70589 -19.84249 -18.90017 -18.55248 -17.06656 -16.68661 -16.17414 -15.79954 -15.68833 -15.46849 -14.85323 -14.27400 -13.96430 -13.92992 -13.56010 -13.39028 -13.26868 -12.89714 -12.77257 -12.58982 -11.99167 -11.90934 -11.76238 -11.27702 -10.85055 -10.42402 -10.08477 -9.61687 -9.29591 -9.12988 -8.96805 -8.32660 -6.13190 -0.12278 0.54148 0.62297 1.12024 1.46347 1.54412 1.61955 1.76492 1.96733 2.60950 2.96264 3.38773 3.82972 4.05162 4.12604 4.22327 4.23682 4.30824 4.56066 4.63336 4.75105 4.76539 5.01777 5.09684 5.20007 5.27654 5.46953 5.57851 5.61661 5.68016 5.80799 5.95951 6.13317 6.27620 6.70510 6.80882 7.03727 7.69811 9.02492 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.011137 C = 0.007662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.531154 B = 2513.544338 C = 3653.564033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.012 3.988 3 Si 1.082 2.918 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.285 1.285 7 C -0.575 4.575 8 H 0.032 0.968 9 C 0.242 3.758 10 H 0.011 0.989 11 N -0.838 5.838 12 C -0.090 4.090 13 C -0.141 4.141 14 C -0.113 4.113 15 C -0.132 4.132 16 C -0.105 4.105 17 C -0.047 4.047 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.145 4.145 21 C -0.274 4.274 22 S 0.165 5.835 23 H 0.280 0.720 24 H 0.331 0.669 25 H 0.315 0.685 26 H 0.119 0.881 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.832 -10.098 3.848 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.906 3.094 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.211 1.211 7 C -0.617 4.617 8 H 0.050 0.950 9 C 0.132 3.868 10 H 0.028 0.972 11 N -0.367 5.367 12 C -0.093 4.093 13 C -0.159 4.159 14 C -0.131 4.131 15 C -0.150 4.150 16 C -0.125 4.125 17 C -0.049 4.049 18 C -0.278 4.278 19 C -0.178 4.178 20 C -0.175 4.175 21 C -0.410 4.410 22 S 0.438 5.562 23 H 0.092 0.908 24 H 0.145 0.855 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.166 0.834 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.176 0.824 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.654 -6.425 3.372 9.845 hybrid contribution -0.025 -3.410 0.507 3.447 sum 6.630 -9.835 3.879 12.479 Atomic orbital electron populations 1.70608 1.07706 1.32234 1.43975 1.26440 0.96434 1.04136 0.92393 0.83418 0.74701 0.73495 0.77756 1.19954 1.20147 1.21116 1.21599 0.92385 0.91369 1.56299 0.95018 1.18119 0.88348 0.90965 0.89334 0.97153 1.59243 1.28829 1.43430 1.05175 1.21466 0.98152 0.96638 0.93082 1.21032 1.00072 0.97847 0.96995 1.21484 0.96177 0.95963 0.99525 1.21326 1.01008 1.01162 0.91461 1.21427 0.96477 0.94972 0.99627 1.18217 0.99392 0.97160 0.90104 1.23139 1.10142 0.96712 0.97813 1.20449 1.03854 1.01446 0.92027 1.20154 1.04547 0.92201 1.00606 1.26634 1.10919 1.01214 1.02247 1.86147 1.62185 1.04523 1.03330 0.90847 0.85490 0.87314 0.86266 0.83366 0.82625 0.84431 0.83235 0.82430 0.81162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.81 13.51 21.45 0.29 -53.52 16 2 C 0.01 0.67 5.39 84.65 0.46 1.13 16 3 Si 1.08 49.78 29.90 68.60 2.05 51.83 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.57 -30.43 5.78 25.60 0.15 -30.28 16 8 H 0.03 1.75 7.74 -2.91 -0.02 1.73 16 9 C 0.24 11.77 1.74 43.42 0.08 11.84 16 10 H 0.01 0.59 6.69 -2.39 -0.02 0.58 16 11 N -0.84 -38.11 7.39 -174.96 -1.29 -39.40 16 12 C -0.09 -3.79 5.02 -19.61 -0.10 -3.89 16 13 C -0.14 -5.07 9.26 22.23 0.21 -4.86 16 14 C -0.11 -3.23 10.04 22.33 0.22 -3.00 16 15 C -0.13 -3.51 10.03 22.23 0.22 -3.29 16 16 C -0.11 -3.29 9.67 22.53 0.22 -3.07 16 17 C -0.05 -1.83 5.75 -20.09 -0.12 -1.94 16 18 C -0.16 -6.38 4.99 24.02 0.12 -6.26 16 19 C -0.15 -4.98 9.96 21.41 0.21 -4.77 16 20 C -0.14 -4.60 10.16 21.16 0.21 -4.38 16 21 C -0.27 -9.61 11.22 66.77 0.75 -8.86 16 22 S 0.16 7.04 19.20 -56.49 -1.08 5.95 16 23 H 0.28 16.87 6.39 -92.70 -0.59 16.28 16 24 H 0.33 14.30 7.20 -89.70 -0.65 13.66 16 25 H 0.32 12.86 9.06 -89.69 -0.81 12.05 16 26 H 0.12 4.11 6.28 -2.91 -0.02 4.09 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 29 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 31 H 0.16 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.17 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -63.15 282.07 2.47 -60.68 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.13 Total: 36.09 kcal Atomic # 6 Polarization: -64.27 SS G_CDS: 2.63 Total: -61.63 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -1.00 Total: -92.92 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Atomic # 16 Polarization: 7.04 SS G_CDS: -1.08 Total: 5.95 kcal Total: -63.15 2.47 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309259096.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.465 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds