Wall clock time and date at job start Mon Mar 30 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00539 * 2 1 4 4 H 1.48506 * 109.47152 * 269.99977 * 3 2 1 5 5 H 1.48501 * 109.46838 * 29.99599 * 3 2 1 6 6 H 1.48492 * 109.47642 * 149.99647 * 3 2 1 7 7 C 1.37883 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99727 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.47260 * 60.00408 * 9 7 2 11 11 N 1.46899 * 109.47346 * 300.00210 * 9 7 2 12 12 C 1.50707 * 109.47063 * 180.02562 * 9 7 2 13 13 C 1.37975 * 120.07432 * 99.72130 * 12 9 7 14 14 C 1.38333 * 120.14725 * 180.27462 * 13 12 9 15 15 C 1.38376 * 120.28810 * 0.02562 * 14 13 12 16 16 C 1.37935 * 120.15090 * 359.97438 * 15 14 13 17 17 C 1.39555 * 120.07220 * 280.00221 * 12 9 7 18 18 C 1.47836 * 120.14439 * 359.74085 * 17 12 9 19 19 C 1.34786 * 125.26649 * 130.00032 * 18 17 12 20 20 C 1.37969 * 114.70562 * 180.02562 * 19 18 17 21 21 C 1.33614 * 115.06206 * 359.97438 * 20 19 18 22 22 S 1.75863 * 109.75953 * 359.74372 * 21 20 19 23 23 H 0.97006 * 119.99891 * 0.02562 * 1 2 3 24 24 H 1.00896 * 111.00218 * 176.05322 * 11 9 7 25 25 H 1.00903 * 110.99574 * 300.00154 * 11 9 7 26 26 H 1.08000 * 119.92853 * 0.28363 * 13 12 9 27 27 H 1.08003 * 119.85630 * 179.97438 * 14 13 12 28 28 H 1.08010 * 119.92558 * 180.02562 * 15 14 13 29 29 H 1.07993 * 120.07984 * 180.02562 * 16 15 14 30 30 H 1.08001 * 122.65175 * 0.02562 * 19 18 17 31 31 H 1.07995 * 122.47152 * 180.02562 * 20 19 18 32 32 H 1.08001 * 125.12321 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8745 -0.6802 0.8911 11 7 4.0017 -0.5019 -1.1982 12 6 4.0138 -2.6151 0.0010 13 6 4.4348 -3.1995 -1.1758 14 6 4.8908 -4.5055 -1.1787 15 6 4.9275 -5.2344 -0.0030 16 6 4.5095 -4.6621 1.1803 17 6 4.0486 -3.3446 1.1902 18 6 3.5986 -2.7249 2.4547 19 6 2.7231 -3.2721 3.3212 20 6 2.4566 -2.5027 4.4349 21 6 3.1055 -1.3358 4.4851 22 16 4.1287 -1.1628 3.0653 23 1 -0.4850 0.8401 -0.0004 24 1 5.0081 -0.4320 -1.1894 25 1 3.6784 -0.9597 -2.0374 26 1 4.4084 -2.6361 -2.0968 27 1 5.2188 -4.9585 -2.1026 28 1 5.2851 -6.2536 -0.0119 29 1 4.5391 -5.2319 2.0972 30 1 2.2663 -4.2368 3.1567 31 1 1.7745 -2.8205 5.2095 32 1 3.0186 -0.6102 5.2804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309259102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:21 Heat of formation + Delta-G solvation = 62.303113 kcal Electronic energy + Delta-G solvation = -16892.485033 eV Core-core repulsion = 14330.481805 eV Total energy + Delta-G solvation = -2562.003229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.18180 -36.94373 -34.88314 -31.88558 -31.77611 -29.51727 -27.69750 -26.36630 -23.84980 -22.90398 -21.45946 -19.85253 -18.62273 -17.38520 -16.83449 -15.71604 -15.19067 -14.95231 -14.55425 -14.09703 -13.82539 -13.32329 -12.81930 -12.69474 -12.46464 -12.17989 -12.09363 -11.89230 -11.62578 -11.08596 -10.72675 -10.60006 -10.35820 -10.19668 -9.79651 -9.32025 -8.79344 -8.51885 -8.24132 -7.82788 -7.74904 -7.51786 -5.98817 -4.08013 1.16051 1.87013 1.91564 2.29379 2.58689 3.29991 3.57752 3.61125 3.74480 4.25207 4.66469 5.12295 5.24009 5.30280 5.35284 5.48365 5.50674 5.78039 5.87087 5.96288 6.00340 6.04771 6.31888 6.43855 6.56230 6.69098 6.81495 6.86269 6.91083 6.98450 7.14629 7.39742 7.62863 8.11291 8.29182 8.66018 9.00956 9.63994 11.10621 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.011675 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.637656 B = 2397.787568 C = 3509.090442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.086 3.914 3 Si 0.926 3.074 4 H -0.280 1.280 5 H -0.318 1.318 6 H -0.269 1.269 7 C -0.506 4.506 8 H 0.070 0.930 9 C 0.207 3.793 10 H 0.063 0.937 11 N -0.841 5.841 12 C -0.052 4.052 13 C -0.131 4.131 14 C -0.114 4.114 15 C -0.143 4.143 16 C -0.100 4.100 17 C -0.025 4.025 18 C -0.105 4.105 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.234 4.234 22 S 0.125 5.875 23 H 0.263 0.737 24 H 0.311 0.689 25 H 0.335 0.665 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.187 -6.644 4.397 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.118 4.118 3 Si 0.758 3.242 4 H -0.207 1.207 5 H -0.248 1.248 6 H -0.194 1.194 7 C -0.544 4.544 8 H 0.088 0.912 9 C 0.097 3.903 10 H 0.080 0.920 11 N -0.371 5.371 12 C -0.055 4.055 13 C -0.149 4.149 14 C -0.133 4.133 15 C -0.161 4.161 16 C -0.120 4.120 17 C -0.027 4.027 18 C -0.223 4.223 19 C -0.166 4.166 20 C -0.160 4.160 21 C -0.369 4.369 22 S 0.393 5.607 23 H 0.072 0.928 24 H 0.123 0.877 25 H 0.150 0.850 26 H 0.138 0.862 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.594 -4.736 4.201 12.342 hybrid contribution -0.430 -1.149 0.167 1.238 sum 10.165 -5.886 4.368 12.532 Atomic orbital electron populations 1.69951 1.06736 1.27221 1.49525 1.24941 0.94514 0.99779 0.92545 0.86012 0.78906 0.81183 0.78118 1.20654 1.24778 1.19429 1.20570 0.86636 0.94484 1.52708 0.91223 1.19015 0.96924 0.83760 0.90556 0.91959 1.59350 1.12969 1.58597 1.06219 1.21419 0.92620 0.99900 0.91550 1.20900 1.00862 0.95356 0.97822 1.21101 0.99964 0.94546 0.97689 1.20849 1.02930 0.99570 0.92750 1.21113 0.98935 0.93924 0.98018 1.17930 1.00704 0.93511 0.90561 1.22680 1.03815 0.97647 0.98121 1.20133 0.99917 1.01945 0.94565 1.19899 1.02017 0.94721 0.99407 1.25677 1.06127 1.02159 1.02957 1.84146 1.44090 1.18507 1.13954 0.92780 0.87725 0.84978 0.86225 0.86712 0.86577 0.86386 0.84865 0.84935 0.82545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 2 C 0.09 2.51 5.47 -17.82 -0.10 2.42 16 3 Si 0.93 23.95 26.03 -169.99 -4.42 19.52 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.32 -8.34 7.11 56.52 0.40 -7.94 16 6 H -0.27 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.51 -14.08 9.09 -34.44 -0.31 -14.39 16 8 H 0.07 2.17 7.98 -52.49 -0.42 1.75 16 9 C 0.21 4.76 1.81 -70.01 -0.13 4.63 16 10 H 0.06 1.48 3.86 -40.01 -0.15 1.33 16 11 N -0.84 -17.55 6.25 -6.65 -0.04 -17.59 16 12 C -0.05 -1.06 5.04 -104.22 -0.53 -1.58 16 13 C -0.13 -2.32 9.24 -39.64 -0.37 -2.68 16 14 C -0.11 -1.74 10.04 -39.50 -0.40 -2.14 16 15 C -0.14 -2.10 10.03 -39.64 -0.40 -2.49 16 16 C -0.10 -1.62 9.67 -39.19 -0.38 -2.00 16 17 C -0.02 -0.48 5.75 -104.97 -0.60 -1.08 16 18 C -0.11 -2.04 5.22 -36.88 -0.19 -2.24 16 19 C -0.14 -2.45 9.97 -40.90 -0.41 -2.86 16 20 C -0.13 -2.15 10.16 -41.30 -0.42 -2.57 16 21 C -0.23 -3.90 11.22 29.11 0.33 -3.57 16 22 S 0.13 2.35 20.43 -107.50 -2.20 0.15 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.31 5.56 9.06 -39.29 -0.36 5.21 16 25 H 0.34 6.65 7.28 -39.29 -0.29 6.36 16 26 H 0.12 1.95 6.24 -52.49 -0.33 1.62 16 27 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 281.21 15.07 4.24 4.24 Total: -1.00 -31.84 281.21 -8.80 -40.64 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -3.25 Total: 10.55 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: -3.90 Total: -30.55 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.73 Total: -44.55 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.42 Total: 19.52 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.20 Total: 0.15 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.84 -8.80 -40.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309259102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.941 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds