Wall clock time and date at job start Mon Mar 30 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00539 * 2 1 4 4 H 1.48506 * 109.47152 * 269.99977 * 3 2 1 5 5 H 1.48501 * 109.46838 * 29.99599 * 3 2 1 6 6 H 1.48492 * 109.47642 * 149.99647 * 3 2 1 7 7 C 1.37883 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00200 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99727 * 180.02562 * 7 2 1 10 10 H 1.08998 * 109.47260 * 60.00408 * 9 7 2 11 11 N 1.46899 * 109.47346 * 300.00210 * 9 7 2 12 12 C 1.50707 * 109.47063 * 180.02562 * 9 7 2 13 13 C 1.37975 * 120.07432 * 99.72130 * 12 9 7 14 14 C 1.38333 * 120.14725 * 180.27462 * 13 12 9 15 15 C 1.38376 * 120.28810 * 0.02562 * 14 13 12 16 16 C 1.37935 * 120.15090 * 359.97438 * 15 14 13 17 17 C 1.39555 * 120.07220 * 280.00221 * 12 9 7 18 18 C 1.47836 * 120.14439 * 359.74085 * 17 12 9 19 19 C 1.34786 * 125.26649 * 130.00032 * 18 17 12 20 20 C 1.37969 * 114.70562 * 180.02562 * 19 18 17 21 21 C 1.33614 * 115.06206 * 359.97438 * 20 19 18 22 22 S 1.75863 * 109.75953 * 359.74372 * 21 20 19 23 23 H 0.97006 * 119.99891 * 0.02562 * 1 2 3 24 24 H 1.00896 * 111.00218 * 176.05322 * 11 9 7 25 25 H 1.00903 * 110.99574 * 300.00154 * 11 9 7 26 26 H 1.08000 * 119.92853 * 0.28363 * 13 12 9 27 27 H 1.08003 * 119.85630 * 179.97438 * 14 13 12 28 28 H 1.08010 * 119.92558 * 180.02562 * 15 14 13 29 29 H 1.07993 * 120.07984 * 180.02562 * 16 15 14 30 30 H 1.08001 * 122.65175 * 0.02562 * 19 18 17 31 31 H 1.07995 * 122.47152 * 180.02562 * 20 19 18 32 32 H 1.08001 * 125.12321 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 1 3.8745 -0.6802 0.8911 11 7 4.0017 -0.5019 -1.1982 12 6 4.0138 -2.6151 0.0010 13 6 4.4348 -3.1995 -1.1758 14 6 4.8908 -4.5055 -1.1787 15 6 4.9275 -5.2344 -0.0030 16 6 4.5095 -4.6621 1.1803 17 6 4.0486 -3.3446 1.1902 18 6 3.5986 -2.7249 2.4547 19 6 2.7231 -3.2721 3.3212 20 6 2.4566 -2.5027 4.4349 21 6 3.1055 -1.3358 4.4851 22 16 4.1287 -1.1628 3.0653 23 1 -0.4850 0.8401 -0.0004 24 1 5.0081 -0.4320 -1.1894 25 1 3.6784 -0.9597 -2.0374 26 1 4.4084 -2.6361 -2.0968 27 1 5.2188 -4.9585 -2.1026 28 1 5.2851 -6.2536 -0.0119 29 1 4.5391 -5.2319 2.0972 30 1 2.2663 -4.2368 3.1567 31 1 1.7745 -2.8205 5.2095 32 1 3.0186 -0.6102 5.2804 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309259102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:21 Heat of formation + Delta-G solvation = 41.956521 kcal Electronic energy + Delta-G solvation = -16893.367328 eV Core-core repulsion = 14330.481805 eV Total energy + Delta-G solvation = -2562.885523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53959 -38.28451 -36.56064 -33.99795 -33.09101 -30.92000 -29.07411 -28.28943 -25.18470 -24.57359 -22.78453 -21.42042 -19.97305 -19.04699 -18.60449 -17.10694 -16.76378 -16.57024 -16.12236 -15.61872 -15.41786 -14.85135 -14.37096 -14.13594 -13.97399 -13.82123 -13.46483 -13.37709 -12.95437 -12.78459 -12.70797 -12.09014 -11.89706 -11.72034 -11.64288 -11.36262 -10.73367 -10.11805 -9.61123 -9.44697 -9.22260 -8.92100 -8.22889 -6.32987 -0.18693 0.55811 0.57342 0.95128 1.21873 1.47555 1.53766 1.67640 1.95281 2.51804 2.93660 3.12351 3.81511 4.06380 4.11394 4.16572 4.24896 4.27333 4.56669 4.63443 4.72242 4.74981 5.02619 5.05436 5.17452 5.22541 5.43400 5.48083 5.59638 5.61388 5.66406 5.83097 6.11050 6.16596 6.47459 6.76814 6.95765 7.41566 8.90596 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.011675 C = 0.007977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.637656 B = 2397.787568 C = 3509.090442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.276 1.276 5 H -0.325 1.325 6 H -0.256 1.256 7 C -0.491 4.491 8 H 0.022 0.978 9 C 0.214 3.786 10 H 0.059 0.941 11 N -0.845 5.845 12 C -0.088 4.088 13 C -0.141 4.141 14 C -0.111 4.111 15 C -0.131 4.131 16 C -0.104 4.104 17 C -0.047 4.047 18 C -0.126 4.126 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.230 4.230 22 S 0.085 5.915 23 H 0.262 0.738 24 H 0.333 0.667 25 H 0.341 0.659 26 H 0.128 0.872 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 -7.850 4.482 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.164 4.164 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.255 1.255 6 H -0.180 1.180 7 C -0.529 4.529 8 H 0.040 0.960 9 C 0.103 3.897 10 H 0.076 0.924 11 N -0.378 5.378 12 C -0.092 4.092 13 C -0.159 4.159 14 C -0.129 4.129 15 C -0.149 4.149 16 C -0.124 4.124 17 C -0.050 4.050 18 C -0.243 4.243 19 C -0.176 4.176 20 C -0.166 4.166 21 C -0.365 4.365 22 S 0.352 5.648 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.156 0.844 26 H 0.145 0.855 27 H 0.169 0.831 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.162 0.838 31 H 0.181 0.819 32 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 12.447 -5.959 4.281 14.448 hybrid contribution -0.974 -0.958 0.154 1.375 sum 11.473 -6.917 4.435 14.111 Atomic orbital electron populations 1.70080 1.08377 1.27817 1.52429 1.25678 0.94993 1.02945 0.92833 0.85112 0.78088 0.77404 0.78215 1.20214 1.25528 1.18011 1.20692 0.89473 0.92107 1.50643 0.95985 1.18663 0.93678 0.86277 0.91041 0.92378 1.59054 1.14626 1.58349 1.05723 1.21247 0.95625 0.98940 0.93340 1.21105 1.00911 0.96757 0.97127 1.21515 0.98505 0.93397 0.99493 1.21349 1.00729 1.01082 0.91704 1.21427 0.98289 0.92877 0.99788 1.18188 1.01692 0.94896 0.90181 1.22929 1.04700 0.97881 0.98838 1.20485 0.99501 1.02681 0.94927 1.20264 1.02247 0.94455 0.99663 1.26041 1.05055 1.02830 1.02547 1.84132 1.45454 1.19379 1.15855 0.92910 0.85400 0.84376 0.85453 0.83147 0.82602 0.84352 0.83789 0.81866 0.79663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 2 C 0.03 2.04 5.47 84.66 0.46 2.50 16 3 Si 0.98 49.89 26.03 68.60 1.79 51.68 16 4 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 5 H -0.32 -16.72 7.11 99.48 0.71 -16.01 16 6 H -0.26 -12.28 6.54 99.48 0.65 -11.63 16 7 C -0.49 -28.05 9.09 25.60 0.23 -27.82 16 8 H 0.02 1.43 7.98 -2.91 -0.02 1.41 16 9 C 0.21 9.85 1.81 43.43 0.08 9.93 16 10 H 0.06 2.77 3.86 -9.97 -0.04 2.73 16 11 N -0.85 -34.50 6.25 -174.95 -1.09 -35.59 16 12 C -0.09 -3.58 5.04 -19.61 -0.10 -3.68 16 13 C -0.14 -4.75 9.24 22.23 0.21 -4.55 16 14 C -0.11 -2.99 10.04 22.33 0.22 -2.76 16 15 C -0.13 -3.35 10.03 22.23 0.22 -3.12 16 16 C -0.10 -3.15 9.67 22.52 0.22 -2.94 16 17 C -0.05 -1.80 5.75 -20.09 -0.12 -1.91 16 18 C -0.13 -4.91 5.22 24.02 0.13 -4.78 16 19 C -0.15 -5.19 9.97 21.41 0.21 -4.98 16 20 C -0.14 -4.33 10.16 21.16 0.21 -4.12 16 21 C -0.23 -7.39 11.22 66.77 0.75 -6.64 16 22 S 0.08 3.17 20.43 -56.49 -1.15 2.02 16 23 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 24 H 0.33 11.37 9.06 -89.70 -0.81 10.56 16 25 H 0.34 13.25 7.28 -89.69 -0.65 12.59 16 26 H 0.13 3.95 6.24 -2.91 -0.02 3.93 16 27 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 29 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 30 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 31 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 32 H 0.19 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -70.91 281.21 2.18 -68.73 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -0.39 Total: 28.17 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 2.73 Total: -54.87 kcal Atomic # 7 Polarization: -94.94 SS G_CDS: -0.79 Total: -95.73 kcal Atomic # 14 Polarization: 49.89 SS G_CDS: 1.79 Total: 51.68 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.15 Total: 2.02 kcal Total: -70.91 2.18 -68.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309259102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.691 kcal (2) G-P(sol) polarization free energy of solvation -70.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds