Wall clock time and date at job start Mon Mar 30 2020 07:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37873 * 120.08482 * 2 1 4 4 C 1.38429 * 120.16380 * 180.27481 * 3 2 1 5 5 C 1.38416 * 120.34355 * 359.74632 * 4 3 2 6 6 C 1.37882 * 120.16682 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.08831 * 179.97438 * 6 5 4 8 8 C 1.39834 * 120.08180 * 179.76905 * 2 1 3 9 9 C 1.47407 * 120.17368 * 359.97438 * 8 2 1 10 10 N 1.30893 * 125.13491 * 311.72993 * 9 8 2 11 11 C 1.29941 * 117.58696 * 180.02562 * 10 9 8 12 12 C 1.38855 * 114.87827 * 359.97438 * 11 10 9 13 13 C 1.39750 * 126.10199 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99871 * 352.00587 * 13 12 11 15 15 C 1.40131 * 120.00080 * 172.01052 * 13 12 11 16 16 N 1.30827 * 119.99828 * 7.95126 * 15 13 12 17 17 Si 1.86793 * 119.99902 * 187.95358 * 15 13 12 18 18 H 1.48500 * 109.47253 * 94.96152 * 17 15 13 19 19 H 1.48501 * 109.47241 * 214.95873 * 17 15 13 20 20 H 1.48498 * 109.47417 * 334.96166 * 17 15 13 21 21 S 1.76086 * 125.13908 * 131.73762 * 9 8 2 22 22 H 1.09004 * 109.46703 * 267.75100 * 1 2 3 23 23 H 1.08999 * 109.46961 * 27.75406 * 1 2 3 24 24 H 1.08998 * 109.47014 * 147.75617 * 1 2 3 25 25 H 1.07998 * 119.92002 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.82625 * 179.71962 * 4 3 2 27 27 H 1.08000 * 119.91798 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47321 * 264.21286 * 7 6 5 29 29 H 1.09003 * 109.46608 * 24.20606 * 7 6 5 30 30 H 1.08995 * 109.47168 * 144.20586 * 7 6 5 31 31 H 1.08005 * 122.55844 * 179.72215 * 11 10 9 32 32 H 0.96995 * 119.99508 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1930 0.0000 4 6 3.5825 1.1949 -0.0057 5 6 4.2834 0.0013 -0.0062 6 6 3.6063 -1.1998 -0.0005 7 6 4.3712 -2.4983 -0.0016 8 6 2.2080 -1.2100 0.0049 9 6 1.4767 -2.4898 0.0106 10 7 0.4846 -2.7870 0.8111 11 6 -0.0556 -3.9625 0.6893 12 6 0.5048 -4.7635 -0.2968 13 6 0.1081 -6.0623 -0.6267 14 1 -0.6153 -6.5783 -0.0128 15 6 0.6490 -6.6950 -1.7540 16 7 1.6353 -6.1366 -2.4074 17 14 -0.0384 -8.3358 -2.3238 18 1 -1.0571 -8.1059 -3.3796 19 1 1.0615 -9.1703 -2.8707 20 1 -0.6662 -9.0356 -1.1744 21 16 1.8057 -3.8499 -1.0582 22 1 -0.3633 -0.0403 1.0269 23 1 -0.3633 0.9094 -0.4786 24 1 -0.3633 -0.8692 -0.5483 25 1 1.6583 2.1283 0.0004 26 1 4.1183 2.1326 -0.0103 27 1 5.3634 0.0108 -0.0111 28 1 4.4614 -2.8660 -1.0237 29 1 5.3653 -2.3346 0.4146 30 1 3.8404 -3.2331 0.6035 31 1 -0.8750 -4.2928 1.3105 32 1 2.0094 -6.5744 -3.1879 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309276908.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:45 Heat of formation + Delta-G solvation = 25.860996 kcal Electronic energy + Delta-G solvation = -16392.510088 eV Core-core repulsion = 13828.926610 eV Total energy + Delta-G solvation = -2563.583478 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -38.88806 -37.06472 -34.40570 -32.90458 -31.75318 -29.39783 -27.18710 -26.04979 -25.03082 -23.04390 -20.89104 -20.00618 -18.64045 -17.73280 -15.97146 -15.57229 -14.97267 -14.75566 -14.09872 -13.52845 -13.36953 -12.54438 -12.50854 -12.41274 -12.33932 -12.20617 -12.04293 -11.98268 -11.60881 -11.21328 -11.09868 -10.98777 -10.68090 -10.40535 -10.32485 -9.92860 -9.36291 -8.37426 -7.97995 -7.97650 -7.66417 -7.14245 -7.01185 -4.70708 1.75461 1.98591 2.46469 2.80675 2.87215 2.97356 3.37817 3.53006 3.88078 4.09947 4.49714 4.97707 5.38671 5.44545 5.50863 5.61744 5.84405 5.99310 6.15712 6.22292 6.30264 6.37447 6.42764 6.55203 6.58086 6.71939 6.86726 6.95709 7.01764 7.04887 7.20550 7.41392 7.54456 7.67834 7.81691 8.17362 8.24065 9.57830 9.68363 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.006068 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.950689 B = 4613.536084 C = 5087.734473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.139 4.139 5 C -0.127 4.127 6 C -0.086 4.086 7 C -0.110 4.110 8 C 0.053 3.947 9 C -0.151 4.151 10 N -0.405 5.405 11 C -0.166 4.166 12 C 0.001 3.999 13 C -0.358 4.358 14 H 0.101 0.899 15 C 0.047 3.953 16 N -0.761 5.761 17 Si 0.939 3.061 18 H -0.263 1.263 19 H -0.271 1.271 20 H -0.256 1.256 21 S 0.100 5.900 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 3.777 -0.783 4.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 C -0.148 4.148 4 C -0.158 4.158 5 C -0.145 4.145 6 C -0.088 4.088 7 C -0.167 4.167 8 C 0.049 3.951 9 C -0.413 4.413 10 N -0.116 5.116 11 C -0.324 4.324 12 C -0.123 4.123 13 C -0.395 4.395 14 H 0.119 0.881 15 C -0.176 4.176 16 N -0.387 5.387 17 Si 0.762 3.238 18 H -0.188 1.188 19 H -0.195 1.195 20 H -0.179 1.179 21 S 0.353 5.647 22 H 0.085 0.915 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.131 0.869 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.154 0.846 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.509 4.074 -1.376 5.550 hybrid contribution -0.976 -1.003 0.212 1.415 sum 2.533 3.071 -1.163 4.147 Atomic orbital electron populations 1.20607 0.91325 1.01268 1.02171 1.20034 0.96125 0.91979 0.99576 1.20797 0.94096 0.96886 1.03003 1.20924 0.94124 0.97300 1.03472 1.20753 0.98904 0.91943 1.02943 1.20021 0.92961 0.95215 1.00620 1.20801 0.98371 0.94888 1.02612 1.17701 0.90781 0.89968 0.96629 1.24482 1.07400 1.00641 1.08753 1.65518 1.06021 1.18296 1.21725 1.21350 1.10109 0.91980 1.08966 1.23375 0.95313 0.97601 0.95985 1.19267 1.17746 0.96273 1.06256 0.88087 1.26333 0.94057 1.01315 0.95942 1.69033 1.16917 1.37689 1.15032 0.85732 0.79449 0.78718 0.79934 1.18816 1.19531 1.17902 1.84971 1.34154 1.06976 1.38562 0.91465 0.93397 0.91157 0.86981 0.87087 0.86887 0.91225 0.92702 0.90729 0.84646 0.88721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 9.05 36.01 0.33 -1.51 16 2 C -0.07 -1.49 5.92 -104.15 -0.62 -2.11 16 3 C -0.13 -2.20 9.68 -39.64 -0.38 -2.59 16 4 C -0.14 -2.21 10.04 -39.45 -0.40 -2.61 16 5 C -0.13 -2.15 9.66 -39.65 -0.38 -2.53 16 6 C -0.09 -1.70 5.92 -104.15 -0.62 -2.31 16 7 C -0.11 -2.03 8.48 36.01 0.31 -1.72 16 8 C 0.05 1.16 5.85 -104.97 -0.61 0.55 16 9 C -0.15 -3.70 5.09 -14.22 -0.07 -3.78 16 10 N -0.40 -10.38 9.32 -10.44 -0.10 -10.48 16 11 C -0.17 -4.25 11.35 -18.12 -0.21 -4.46 16 12 C 0.00 0.03 6.23 -38.79 -0.24 -0.21 16 13 C -0.36 -8.64 9.30 -38.31 -0.36 -9.00 16 14 H 0.10 2.27 7.86 -52.48 -0.41 1.85 16 15 C 0.05 1.05 5.49 -17.27 -0.09 0.96 16 16 N -0.76 -17.57 10.79 55.56 0.60 -16.97 16 17 Si 0.94 16.51 29.57 -169.99 -5.03 11.48 16 18 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 19 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 20 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 21 S 0.10 2.48 18.21 -107.50 -1.96 0.53 16 22 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 23 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 24 H 0.07 1.51 6.87 -51.93 -0.36 1.15 16 25 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.07 1.28 7.82 -51.93 -0.41 0.87 16 29 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.07 1.54 6.78 -51.93 -0.35 1.19 16 31 H 0.14 3.24 8.06 -52.48 -0.42 2.82 16 32 H 0.30 6.18 8.30 -40.82 -0.34 5.84 16 LS Contribution 285.40 15.07 4.30 4.30 Total: -1.00 -27.13 285.40 -9.14 -36.28 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.61 Total: 6.20 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: -3.35 Total: -31.33 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.50 Total: -27.45 kcal Atomic # 14 Polarization: 16.51 SS G_CDS: -5.03 Total: 11.48 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.96 Total: 0.53 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.13 -9.14 -36.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309276908.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.137 kcal (2) G-P(sol) polarization free energy of solvation -27.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds