Wall clock time and date at job start Mon Mar 30 2020 07:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.37873 * 120.08482 * 2 1 4 4 C 1.38429 * 120.16380 * 180.27481 * 3 2 1 5 5 C 1.38416 * 120.34355 * 359.74632 * 4 3 2 6 6 C 1.37882 * 120.16682 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.08831 * 179.97438 * 6 5 4 8 8 C 1.39834 * 120.08180 * 179.76905 * 2 1 3 9 9 C 1.47407 * 120.17368 * 359.97438 * 8 2 1 10 10 N 1.30893 * 125.13491 * 311.72993 * 9 8 2 11 11 C 1.29941 * 117.58696 * 180.02562 * 10 9 8 12 12 C 1.38855 * 114.87827 * 359.97438 * 11 10 9 13 13 C 1.39750 * 126.10199 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99871 * 352.00587 * 13 12 11 15 15 C 1.40131 * 120.00080 * 172.01052 * 13 12 11 16 16 N 1.30827 * 119.99828 * 7.95126 * 15 13 12 17 17 Si 1.86793 * 119.99902 * 187.95358 * 15 13 12 18 18 H 1.48500 * 109.47253 * 94.96152 * 17 15 13 19 19 H 1.48501 * 109.47241 * 214.95873 * 17 15 13 20 20 H 1.48498 * 109.47417 * 334.96166 * 17 15 13 21 21 S 1.76086 * 125.13908 * 131.73762 * 9 8 2 22 22 H 1.09004 * 109.46703 * 267.75100 * 1 2 3 23 23 H 1.08999 * 109.46961 * 27.75406 * 1 2 3 24 24 H 1.08998 * 109.47014 * 147.75617 * 1 2 3 25 25 H 1.07998 * 119.92002 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.82625 * 179.71962 * 4 3 2 27 27 H 1.08000 * 119.91798 * 179.97438 * 5 4 3 28 28 H 1.09003 * 109.47321 * 264.21286 * 7 6 5 29 29 H 1.09003 * 109.46608 * 24.20606 * 7 6 5 30 30 H 1.08995 * 109.47168 * 144.20586 * 7 6 5 31 31 H 1.08005 * 122.55844 * 179.72215 * 11 10 9 32 32 H 0.96995 * 119.99508 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1930 0.0000 4 6 3.5825 1.1949 -0.0057 5 6 4.2834 0.0013 -0.0062 6 6 3.6063 -1.1998 -0.0005 7 6 4.3712 -2.4983 -0.0016 8 6 2.2080 -1.2100 0.0049 9 6 1.4767 -2.4898 0.0106 10 7 0.4846 -2.7870 0.8111 11 6 -0.0556 -3.9625 0.6893 12 6 0.5048 -4.7635 -0.2968 13 6 0.1081 -6.0623 -0.6267 14 1 -0.6153 -6.5783 -0.0128 15 6 0.6490 -6.6950 -1.7540 16 7 1.6353 -6.1366 -2.4074 17 14 -0.0384 -8.3358 -2.3238 18 1 -1.0571 -8.1059 -3.3796 19 1 1.0615 -9.1703 -2.8707 20 1 -0.6662 -9.0356 -1.1744 21 16 1.8057 -3.8499 -1.0582 22 1 -0.3633 -0.0403 1.0269 23 1 -0.3633 0.9094 -0.4786 24 1 -0.3633 -0.8692 -0.5483 25 1 1.6583 2.1283 0.0004 26 1 4.1183 2.1326 -0.0103 27 1 5.3634 0.0108 -0.0111 28 1 4.4614 -2.8660 -1.0237 29 1 5.3653 -2.3346 0.4146 30 1 3.8404 -3.2331 0.6035 31 1 -0.8750 -4.2928 1.3105 32 1 2.0094 -6.5744 -3.1879 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309276908.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:44 Heat of formation + Delta-G solvation = 12.397502 kcal Electronic energy + Delta-G solvation = -16393.093909 eV Core-core repulsion = 13828.926610 eV Total energy + Delta-G solvation = -2564.167299 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.36954 -38.88236 -36.18180 -34.34873 -33.24405 -31.19713 -28.77508 -27.44397 -26.76957 -24.80657 -22.48493 -21.45114 -20.43944 -19.48154 -17.65061 -17.26689 -16.43910 -16.29562 -15.58533 -15.07200 -14.95929 -14.26390 -14.15501 -14.02382 -13.88542 -13.71705 -13.70500 -13.47445 -13.13364 -12.89852 -12.63774 -12.41036 -12.06701 -11.82171 -11.79510 -11.55631 -11.28330 -10.06470 -9.87165 -9.44259 -9.37356 -8.95209 -8.79192 -6.57977 0.19011 0.58299 0.79861 1.34342 1.50237 1.51966 1.54051 1.92684 2.12919 2.36204 2.94445 3.13354 3.95873 4.05461 4.10627 4.23299 4.49484 4.59858 4.71057 4.79311 4.80318 4.83405 4.85597 4.98368 5.01503 5.15580 5.16959 5.32229 5.47913 5.65056 5.67396 5.80176 5.92943 5.98733 6.25270 6.35031 6.38351 7.76815 7.89458 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.035347 B = 0.006068 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.950689 B = 4613.536084 C = 5087.734473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.094 4.094 3 C -0.128 4.128 4 C -0.123 4.123 5 C -0.125 4.125 6 C -0.102 4.102 7 C -0.104 4.104 8 C 0.004 3.996 9 C -0.141 4.141 10 N -0.424 5.424 11 C -0.202 4.202 12 C -0.027 4.027 13 C -0.380 4.380 14 H 0.110 0.890 15 C 0.011 3.989 16 N -0.785 5.785 17 Si 1.016 2.984 18 H -0.259 1.259 19 H -0.258 1.258 20 H -0.249 1.249 21 S 0.083 5.917 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.033 0.967 25 H 0.146 0.854 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.139 0.861 32 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 4.999 -1.533 6.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.143 4.143 6 C -0.104 4.104 7 C -0.161 4.161 8 C 0.000 4.000 9 C -0.405 4.405 10 N -0.135 5.135 11 C -0.358 4.358 12 C -0.151 4.151 13 C -0.417 4.417 14 H 0.128 0.872 15 C -0.210 4.210 16 N -0.410 5.410 17 Si 0.834 3.166 18 H -0.183 1.183 19 H -0.182 1.182 20 H -0.172 1.172 21 S 0.336 5.664 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.163 0.837 26 H 0.174 0.826 27 H 0.166 0.834 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.156 0.844 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.860 5.298 -2.109 7.492 hybrid contribution -1.281 -1.218 0.429 1.819 sum 3.578 4.081 -1.680 5.681 Atomic orbital electron populations 1.20520 0.91438 1.01208 1.01462 1.20265 0.96449 0.92609 1.00322 1.21182 0.95021 0.96808 1.01527 1.21473 0.93789 0.98735 1.00137 1.21167 1.00725 0.91017 1.01345 1.20257 0.92218 0.96834 1.01047 1.20731 0.99601 0.93920 1.01835 1.17981 0.92152 0.89553 1.00304 1.25015 1.06658 1.01525 1.07316 1.65520 1.07002 1.18427 1.22553 1.21464 1.11378 0.92630 1.10330 1.23686 0.96003 0.98765 0.96630 1.19679 1.18373 0.96126 1.07483 0.87177 1.27380 0.93769 1.04882 0.94990 1.69061 1.17436 1.39170 1.15373 0.84625 0.78898 0.73625 0.79457 1.18314 1.18243 1.17238 1.84748 1.34491 1.07741 1.39447 0.92227 0.90056 0.94769 0.83655 0.82635 0.83418 0.91825 0.89331 0.93968 0.84368 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 9.05 71.24 0.64 -2.78 16 2 C -0.09 -3.69 5.92 -19.56 -0.12 -3.80 16 3 C -0.13 -3.89 9.68 22.23 0.22 -3.68 16 4 C -0.12 -3.31 10.04 22.36 0.22 -3.09 16 5 C -0.12 -3.75 9.66 22.23 0.21 -3.54 16 6 C -0.10 -3.91 5.92 -19.56 -0.12 -4.03 16 7 C -0.10 -3.83 8.48 71.24 0.60 -3.23 16 8 C 0.00 0.16 5.85 -20.09 -0.12 0.04 16 9 C -0.14 -7.27 5.09 87.25 0.44 -6.82 16 10 N -0.42 -23.10 9.32 -186.94 -1.74 -24.84 16 11 C -0.20 -11.08 11.35 85.12 0.97 -10.11 16 12 C -0.03 -1.49 6.23 22.78 0.14 -1.35 16 13 C -0.38 -18.99 9.30 23.10 0.21 -18.77 16 14 H 0.11 5.10 7.86 -2.91 -0.02 5.08 16 15 C 0.01 0.48 5.49 85.30 0.47 0.95 16 16 N -0.79 -36.75 10.79 21.87 0.24 -36.52 16 17 Si 1.02 33.09 29.57 68.60 2.03 35.12 16 18 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 19 H -0.26 -7.88 7.11 99.48 0.71 -7.17 16 20 H -0.25 -7.82 7.11 99.48 0.71 -7.11 16 21 S 0.08 4.31 18.21 -56.49 -1.03 3.28 16 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 24 H 0.03 1.52 6.87 -2.39 -0.02 1.51 16 25 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 27 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 28 H 0.06 2.37 7.82 -2.39 -0.02 2.35 16 29 H 0.09 2.56 8.05 -2.39 -0.02 2.55 16 30 H 0.04 1.81 6.78 -2.39 -0.02 1.79 16 31 H 0.14 7.14 8.06 -2.91 -0.02 7.11 16 32 H 0.31 12.80 8.30 -92.71 -0.77 12.03 16 Total: -1.00 -62.58 285.40 4.41 -58.17 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.13 Total: 24.99 kcal Atomic # 6 Polarization: -64.00 SS G_CDS: 3.79 Total: -60.21 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -1.51 Total: -61.36 kcal Atomic # 14 Polarization: 33.09 SS G_CDS: 2.03 Total: 35.12 kcal Atomic # 16 Polarization: 4.31 SS G_CDS: -1.03 Total: 3.28 kcal Total: -62.58 4.41 -58.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309276908.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.566 kcal (2) G-P(sol) polarization free energy of solvation -62.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds