Wall clock time and date at job start Mon Mar 30 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47074 * 300.00208 * 3 2 1 6 6 H 1.48498 * 109.47197 * 60.00197 * 3 2 1 7 7 C 1.37876 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46588 * 299.99776 * 9 7 2 11 11 N 1.46896 * 109.47078 * 59.99598 * 9 7 2 12 12 C 1.50705 * 109.47448 * 180.02562 * 9 7 2 13 13 C 1.38376 * 119.92534 * 279.99960 * 12 9 7 14 14 C 1.38338 * 120.28958 * 179.97438 * 13 12 9 15 15 C 1.37979 * 120.14357 * 0.27973 * 14 13 12 16 16 C 1.39556 * 119.85507 * 359.46651 * 15 14 13 17 17 C 1.47824 * 120.14404 * 180.27725 * 16 15 14 18 18 C 1.34790 * 125.27363 * 0.25100 * 17 16 15 19 19 C 1.37958 * 114.70895 * 179.97438 * 18 17 16 20 20 C 1.33618 * 115.06302 * 0.02562 * 19 18 17 21 21 S 1.75863 * 109.75776 * 359.73182 * 20 19 18 22 22 C 1.37938 * 119.92508 * 100.01667 * 12 9 7 23 23 H 0.96995 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.00899 * 111.00092 * 60.00926 * 11 9 7 25 25 H 1.00906 * 111.00050 * 183.95231 * 11 9 7 26 26 H 1.08001 * 119.85508 * 0.02562 * 13 12 9 27 27 H 1.08002 * 119.92371 * 179.97438 * 14 13 12 28 28 H 1.08004 * 120.06886 * 179.72862 * 15 14 13 29 29 H 1.08000 * 122.64404 * 0.02562 * 18 17 16 30 30 H 1.07996 * 122.47298 * 180.02562 * 19 18 17 31 31 H 1.07999 * 125.11851 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.07467 * 0.02832 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8881 11 7 0.4070 -2.5762 -1.2014 12 6 2.2305 -3.6446 -0.0015 13 6 2.8383 -4.0334 -1.1822 14 6 3.7388 -5.0835 -1.1905 15 6 4.0323 -5.7540 -0.0208 16 6 3.4268 -5.3635 1.1744 17 6 3.7412 -6.0733 2.4323 18 6 4.5983 -7.1070 2.5495 19 6 4.7282 -7.6062 3.8291 20 6 3.9863 -6.9912 4.7546 21 16 3.0602 -5.6951 4.0093 22 6 2.5187 -4.3033 1.1757 23 1 -0.4850 0.8400 -0.0004 24 1 0.9653 -2.5243 -2.0403 25 1 -0.1569 -3.4129 -1.1937 26 1 2.6092 -3.5143 -2.1011 27 1 4.2095 -5.3824 -2.1156 28 1 4.7322 -6.5765 -0.0295 29 1 5.1412 -7.5119 1.7083 30 1 5.3814 -8.4332 4.0653 31 1 3.9628 -7.2480 5.8034 32 1 2.0431 -3.9993 2.0965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309496253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:23 Heat of formation + Delta-G solvation = 55.764798 kcal Electronic energy + Delta-G solvation = -16029.911056 eV Core-core repulsion = 13467.624305 eV Total energy + Delta-G solvation = -2562.286751 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.08842 -37.44431 -34.62071 -31.95817 -31.34034 -29.71762 -27.68294 -25.99832 -24.29316 -22.78243 -21.81205 -20.35008 -18.53130 -17.36078 -16.42127 -16.03147 -15.30653 -14.71478 -14.58231 -14.11808 -13.81240 -13.35320 -13.03625 -12.79258 -12.49234 -12.39793 -12.08117 -11.96043 -11.42231 -11.09433 -10.94301 -10.75472 -10.54654 -10.38652 -9.86850 -9.43761 -9.19951 -8.45699 -8.44647 -8.12100 -7.66232 -7.09879 -5.89314 -4.04350 0.67859 1.67414 1.94230 2.04200 2.08570 2.92636 3.32312 3.40653 3.44736 4.33614 4.51642 4.82308 5.04249 5.28994 5.34827 5.38627 5.45191 5.59477 5.76639 5.89826 5.96087 6.16734 6.22131 6.29834 6.45498 6.48808 6.59520 6.89768 6.98911 7.03575 7.49558 7.54480 7.89536 8.16203 8.60651 8.98165 9.12797 9.64521 11.15056 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.005382 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.417889 B = 5201.691191 C = 5733.479029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.252 3.748 10 H 0.047 0.953 11 N -0.809 5.809 12 C -0.067 4.067 13 C -0.113 4.113 14 C -0.121 4.121 15 C -0.123 4.123 16 C -0.034 4.034 17 C -0.117 4.117 18 C -0.150 4.150 19 C -0.130 4.130 20 C -0.233 4.233 21 S 0.125 5.875 22 C -0.107 4.107 23 H 0.255 0.745 24 H 0.318 0.682 25 H 0.299 0.701 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -13.905 4.349 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.072 0.928 9 C 0.143 3.857 10 H 0.065 0.935 11 N -0.334 5.334 12 C -0.070 4.070 13 C -0.132 4.132 14 C -0.139 4.139 15 C -0.144 4.144 16 C -0.036 4.036 17 C -0.235 4.235 18 C -0.180 4.180 19 C -0.161 4.161 20 C -0.369 4.369 21 S 0.391 5.609 22 C -0.127 4.127 23 H 0.065 0.935 24 H 0.130 0.870 25 H 0.109 0.891 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.685 -12.037 5.226 14.301 hybrid contribution 2.156 -1.021 -0.660 2.475 sum 7.841 -13.058 4.566 15.901 Atomic orbital electron populations 1.70110 1.05674 1.25647 1.46647 1.24945 0.94643 0.98559 0.94144 0.86692 0.80294 0.84298 0.77556 1.19873 1.20999 1.21037 1.20850 0.92258 0.89341 1.54466 0.92761 1.18241 0.87532 0.88873 0.91088 0.93547 1.59205 1.27989 1.41994 1.04262 1.21729 0.97292 0.96213 0.91743 1.21119 0.96809 0.96576 0.98690 1.20967 0.98789 0.96733 0.97398 1.20890 1.00972 1.00719 0.91787 1.18038 0.98909 0.96513 0.90098 1.23170 1.02778 1.00901 0.96615 1.20265 1.01453 0.98111 0.98147 1.20007 1.01678 1.02070 0.92328 1.25715 1.04995 1.02591 1.03573 1.84427 1.44588 1.32631 0.99249 1.21149 0.97872 0.94985 0.98671 0.93459 0.86967 0.89124 0.86192 0.86556 0.86715 0.84378 0.84576 0.82106 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.44 12.77 55.43 0.71 -23.73 16 2 C 0.08 2.33 5.39 -17.82 -0.10 2.23 16 3 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.53 -14.44 8.70 -34.44 -0.30 -14.74 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.25 6.16 2.85 -70.02 -0.20 5.96 16 10 H 0.05 1.25 8.00 -51.93 -0.42 0.83 16 11 N -0.81 -18.62 8.36 -6.65 -0.06 -18.68 16 12 C -0.07 -1.40 4.88 -104.68 -0.51 -1.91 16 13 C -0.11 -2.09 9.29 -39.49 -0.37 -2.46 16 14 C -0.12 -1.92 10.03 -39.64 -0.40 -2.31 16 15 C -0.12 -1.93 9.54 -39.18 -0.37 -2.30 16 16 C -0.03 -0.58 5.87 -104.98 -0.62 -1.20 16 17 C -0.12 -1.79 6.37 -36.88 -0.24 -2.03 16 18 C -0.15 -1.95 9.65 -40.91 -0.39 -2.35 16 19 C -0.13 -1.48 10.16 -41.30 -0.42 -1.90 16 20 C -0.23 -2.67 11.22 29.11 0.33 -2.35 16 21 S 0.12 1.74 22.26 -107.50 -2.39 -0.65 16 22 C -0.11 -2.09 9.22 -39.19 -0.36 -2.45 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.32 6.90 7.33 -39.29 -0.29 6.61 16 25 H 0.30 6.16 9.06 -39.29 -0.36 5.81 16 26 H 0.12 2.14 6.65 -52.49 -0.35 1.79 16 27 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.11 1.47 6.76 -52.48 -0.35 1.11 16 29 H 0.14 1.55 6.89 -52.49 -0.36 1.19 16 30 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.16 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.12 2.28 7.26 -52.48 -0.38 1.90 16 LS Contribution 289.61 15.07 4.36 4.36 Total: -1.00 -29.69 289.61 -9.66 -39.35 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -3.32 Total: 10.91 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: -3.94 Total: -27.81 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.65 Total: -42.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.39 Total: -0.65 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.69 -9.66 -39.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309496253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.110 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds