Wall clock time and date at job start Mon Mar 30 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48500 * 109.47213 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47074 * 300.00208 * 3 2 1 6 6 H 1.48498 * 109.47197 * 60.00197 * 3 2 1 7 7 C 1.37876 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00162 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00229 * 0.02562 * 7 2 1 10 10 H 1.09007 * 109.46588 * 299.99776 * 9 7 2 11 11 N 1.46896 * 109.47078 * 59.99598 * 9 7 2 12 12 C 1.50705 * 109.47448 * 180.02562 * 9 7 2 13 13 C 1.38376 * 119.92534 * 279.99960 * 12 9 7 14 14 C 1.38338 * 120.28958 * 179.97438 * 13 12 9 15 15 C 1.37979 * 120.14357 * 0.27973 * 14 13 12 16 16 C 1.39556 * 119.85507 * 359.46651 * 15 14 13 17 17 C 1.47824 * 120.14404 * 180.27725 * 16 15 14 18 18 C 1.34790 * 125.27363 * 0.25100 * 17 16 15 19 19 C 1.37958 * 114.70895 * 179.97438 * 18 17 16 20 20 C 1.33618 * 115.06302 * 0.02562 * 19 18 17 21 21 S 1.75863 * 109.75776 * 359.73182 * 20 19 18 22 22 C 1.37938 * 119.92508 * 100.01667 * 12 9 7 23 23 H 0.96995 * 120.00031 * 0.02562 * 1 2 3 24 24 H 1.00899 * 111.00092 * 60.00926 * 11 9 7 25 25 H 1.00906 * 111.00050 * 183.95231 * 11 9 7 26 26 H 1.08001 * 119.85508 * 0.02562 * 13 12 9 27 27 H 1.08002 * 119.92371 * 179.97438 * 14 13 12 28 28 H 1.08004 * 120.06886 * 179.72862 * 15 14 13 29 29 H 1.08000 * 122.64404 * 0.02562 * 18 17 16 30 30 H 1.07996 * 122.47298 * 180.02562 * 19 18 17 31 31 H 1.07999 * 125.11851 * 180.02562 * 20 19 18 32 32 H 1.08003 * 120.07467 * 0.02832 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6242 -2.5575 0.8881 11 7 0.4070 -2.5762 -1.2014 12 6 2.2305 -3.6446 -0.0015 13 6 2.8383 -4.0334 -1.1822 14 6 3.7388 -5.0835 -1.1905 15 6 4.0323 -5.7540 -0.0208 16 6 3.4268 -5.3635 1.1744 17 6 3.7412 -6.0733 2.4323 18 6 4.5983 -7.1070 2.5495 19 6 4.7282 -7.6062 3.8291 20 6 3.9863 -6.9912 4.7546 21 16 3.0602 -5.6951 4.0093 22 6 2.5187 -4.3033 1.1757 23 1 -0.4850 0.8400 -0.0004 24 1 0.9653 -2.5243 -2.0403 25 1 -0.1569 -3.4129 -1.1937 26 1 2.6092 -3.5143 -2.1011 27 1 4.2095 -5.3824 -2.1156 28 1 4.7322 -6.5765 -0.0295 29 1 5.1412 -7.5119 1.7083 30 1 5.3814 -8.4332 4.0653 31 1 3.9628 -7.2480 5.8034 32 1 2.0431 -3.9993 2.0965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309496253.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:23 Heat of formation + Delta-G solvation = 38.207342 kcal Electronic energy + Delta-G solvation = -16030.672405 eV Core-core repulsion = 13467.624305 eV Total energy + Delta-G solvation = -2563.048100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.43677 -38.51917 -36.36160 -33.78921 -32.74766 -31.23637 -28.85403 -28.00190 -25.46714 -24.37545 -23.13256 -21.78621 -19.60882 -18.69549 -18.35908 -17.32286 -16.63165 -16.40602 -16.18081 -15.57267 -15.35454 -14.58183 -14.43596 -14.27488 -13.99043 -13.44197 -13.39333 -13.31010 -13.03747 -12.77809 -12.73170 -12.29370 -12.12325 -11.74245 -11.48574 -11.29984 -10.58514 -10.52938 -9.63248 -9.49345 -8.99557 -8.79017 -8.00668 -6.22583 -0.42843 0.56661 0.65125 0.83996 1.11680 1.40176 1.42193 1.53068 1.91266 2.44589 3.00499 3.22995 3.66890 4.03633 4.07654 4.23737 4.29966 4.40790 4.50831 4.58529 4.67201 4.78328 4.94967 5.12851 5.17732 5.28380 5.35259 5.49935 5.58427 5.66268 5.73441 5.89645 6.07783 6.19027 6.62826 7.08174 7.23568 7.49963 9.03037 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.005382 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.417889 B = 5201.691191 C = 5733.479029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.035 3.965 3 Si 0.949 3.051 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.043 0.957 9 C 0.259 3.741 10 H 0.005 0.995 11 N -0.818 5.818 12 C -0.091 4.091 13 C -0.128 4.128 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.029 4.029 17 C -0.158 4.158 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.211 4.211 21 S 0.071 5.929 22 C -0.132 4.132 23 H 0.256 0.744 24 H 0.325 0.675 25 H 0.311 0.689 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.163 0.837 30 H 0.174 0.826 31 H 0.191 0.809 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.908 -16.125 4.289 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.062 0.938 9 C 0.149 3.851 10 H 0.023 0.977 11 N -0.345 5.345 12 C -0.093 4.093 13 C -0.147 4.147 14 C -0.126 4.126 15 C -0.139 4.139 16 C -0.031 4.031 17 C -0.275 4.275 18 C -0.159 4.159 19 C -0.165 4.165 20 C -0.347 4.347 21 S 0.337 5.663 22 C -0.152 4.152 23 H 0.065 0.935 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.138 0.862 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.191 0.809 31 H 0.209 0.791 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.346 -14.261 5.158 17.310 hybrid contribution 1.402 -0.513 -0.529 1.584 sum 9.748 -14.773 4.629 18.295 Atomic orbital electron populations 1.70233 1.07033 1.26388 1.47901 1.25683 0.95446 1.01807 0.93905 0.85681 0.78958 0.80251 0.77673 1.19640 1.20358 1.20643 1.21112 0.91912 0.91023 1.53985 0.93838 1.17839 0.87709 0.89725 0.89865 0.97727 1.59002 1.28379 1.42995 1.04126 1.21327 0.98203 0.96234 0.93544 1.21172 0.97937 0.98014 0.97589 1.21348 0.97144 0.94976 0.99171 1.21341 1.00636 1.01136 0.90740 1.18237 0.97585 0.95341 0.91949 1.23128 1.05435 1.02945 0.95947 1.20687 0.99330 0.96150 0.99715 1.20404 1.01930 1.02820 0.91365 1.26118 1.03130 1.00411 1.05022 1.84677 1.46305 1.34993 1.00372 1.21084 0.99674 0.96810 0.97641 0.93485 0.86150 0.87803 0.86180 0.82700 0.82885 0.81978 0.80897 0.79149 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.51 12.77 21.45 0.27 -52.24 16 2 C 0.04 2.01 5.39 84.65 0.46 2.46 16 3 Si 0.95 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -30.70 8.70 25.60 0.22 -30.48 16 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.26 13.37 2.85 43.42 0.12 13.50 16 10 H 0.00 0.28 8.00 -2.38 -0.02 0.26 16 11 N -0.82 -39.30 8.36 -174.95 -1.46 -40.76 16 12 C -0.09 -3.95 4.88 -19.90 -0.10 -4.04 16 13 C -0.13 -4.73 9.29 22.33 0.21 -4.53 16 14 C -0.11 -3.17 10.03 22.23 0.22 -2.94 16 15 C -0.12 -3.37 9.54 22.53 0.21 -3.15 16 16 C -0.03 -0.99 5.87 -20.10 -0.12 -1.11 16 17 C -0.16 -4.62 6.37 24.02 0.15 -4.47 16 18 C -0.13 -2.87 9.65 21.41 0.21 -2.66 16 19 C -0.14 -2.50 10.16 21.15 0.21 -2.29 16 20 C -0.21 -4.21 11.22 66.77 0.75 -3.46 16 21 S 0.07 1.98 22.26 -56.49 -1.26 0.72 16 22 C -0.13 -5.43 9.22 22.53 0.21 -5.22 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.33 14.58 7.33 -89.69 -0.66 13.92 16 25 H 0.31 13.43 9.06 -89.69 -0.81 12.62 16 26 H 0.12 4.30 6.65 -2.91 -0.02 4.28 16 27 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 28 H 0.15 3.13 6.76 -2.91 -0.02 3.11 16 29 H 0.16 2.78 6.89 -2.91 -0.02 2.76 16 30 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.10 4.28 7.26 -2.91 -0.02 4.26 16 Total: -1.00 -66.94 289.61 2.03 -64.90 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.31 Total: 29.06 kcal Atomic # 6 Polarization: -51.17 SS G_CDS: 2.76 Total: -48.41 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -1.19 Total: -93.00 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -1.26 Total: 0.72 kcal Total: -66.94 2.03 -64.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309496253.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.112 kcal (2) G-P(sol) polarization free energy of solvation -66.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds